BAC Information

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BAC

Clone NameB6Ng01-080E05
Chromosome13 (Build37)
Map Location 74,016,686 - 74,146,004
singlet/doubletdoublet
Overlap geneTrip13, Brd9, Zdhhc11, LOC100042909
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360
Downstream gene2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080E05.bB6Ng01-080E05.g
ACCDH895450DH895451
length1,0831,161
definitionDH895450|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E05, 5' end.DH895451|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,144,913 - 74,146,004)(74,016,686 - 74,017,680)
sequence
gaattcccactcaccatggaagccatgtgagttcaggactgtgggactat
aaggaatggagaaccagacccagactctctccttttttatagggtcttgg
cttggccacttgccttatgtcccacaaagccccaagtcctgctgtgatgg
tttgtatatgcttggcccaagaagtggcactatttggaggtgtggccttg
ttggagtaggtgtgacctggttggagtaggtgtgtcactgtgggcatgga
cttaagaccctcaccctagctgcctggaagtgagtagcagccttcagatg
aagatgtagaactctcagctcctcttgcaccatgcctgcctggatgctgc
catgctcccaccttgatgataatggactgaacctcagaacctgtaaacca
accccaattaaatgtgtcctttataagatttgccttggtcatggtgtctg
ttcacagcagtaaaaccctaactaagaaacctcccattctctgaaaatca
acaatgtaaatgaagttctgaaagctgaaatacatgtttatgtttctatt
agcatgtttcgaaatggtgactttatcgttaaattttatttttatttatt
gtgtgtgcatatgcctgtttgaaagtatgtgcgccatttgcatgctgggt
gccctcggaaaccagatgggtaagttagatttcttagagctggaattaca
ggtaattgtgggatgcctaatgtgggttctggggattaaatacaggaaga
cttgtatcaatataataaagttctagaggcccggctgttaacaaccatag
tccaagatgtcagcttgacgggttcggatcatggcttctgacctgaccct
cctgcagcatgacagctgctgaagtttcaaggctcttacctgcgacaatc
tgtataggagacctgcaccaaatccaatggatgtgcctctggtgagcatc
cctcatagtgacccagcaaaacacctctgctggggtgatggtggcctcca
aatcactacatttgaacctcaaatatgaccttacatgtaaacagggtctt
ggccggggacatagtccgggggaaggcttcttt
gaattcacgcagttgaatccttctcaacactctgttttacgggaaccttt
attaaccccttcttccccgttatgcagttctgaatcctccctgtagcagg
gggtcttcgctcatgcctgaagatgtttcttttcccgggtttctcgttcc
gggtcttctcgtcccgtcccgagtttttcttcccgggtttcggcaccaac
tgttgcgcgcgctcaacaggccaggaagaacgacgctgctacaggatcct
tctgcacacgtttattcagtcctgtttcttcttgtttatatctcccttgt
tcatatctcccctgtttatatctcccctgtttatatctcccttgttttta
tatctcccttgtttatatctcccttgtttttatatctcccccctaatagt
aatcctctctcgaataataatcctccctctagcctgggcctctcactctt
ttatactttcagttcccatccacgcacagcaggccacgccacctcaccag
gcatgcagcttcagctaatcagggcagcaggggcaaatctccaccaaatt
ggattcacctgtatcctggtacacctgcccagcactcaagatgtttgtgt
cttatatgaggaagtcaggtgcaagtcatatgacttagctacagtccctg
gcgcctttaggactgccgccacacctgctcctaacatgtgggtgtggctc
agagggaaggcactctgtcctgcttgctgaggaagcctggaaccctggct
atctccctgggaacccagatttttaaatgcccaactttcctgtgatatgc
ttacatggtgtcacagaaaaatacctccaaggctctgtccttctcaggaa
ccatctatcagctgcctccaggaggggatccagaacagcctactttttac
ccattgggaaaaagtgttctacactacacattgtgagccatcagctctct
caaatcattggacccacagcgccctagtggtcgtgcgcttcaccaaagaa
ggtatctttacctctgagccaggaagtattgtatagcagactctgaacaa
gtatgtcttcttaacagaagccagacgcctcttgccacgcccttagtact
ctcagtttcccaagaaaagctcctttagccttatcggtccttttctacct
agctcctaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74144913_74146004
seq2: B6Ng01-080E05.b_45_1127 (reverse)

seq1  AAAGAAGCCTTTTCCCCCCCGAACTATGTCCCCAGACCAAGACCCTGTTT  50
      |||||||||||    |||||| ||||||||||| | ||||||||||||||
seq2  AAAGAAGCCTT----CCCCCGGACTATGTCCCC-GGCCAAGACCCTGTTT  45

seq1  ACATGTAAGGTCATATTTTGAGGTTCCAAATGTAGTGAATTTGGAGGGCC  100
      ||||||||||||||| ||||||||| ||||||||||| ||||||| ||||
seq2  ACATGTAAGGTCATA-TTTGAGGTT-CAAATGTAGTG-ATTTGGA-GGCC  91

seq1  ACCATCACCCCAGCAGAGGTGTTTTGCTGGGTCACTATGAGGGATGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACCCCAGCAGAGGTGTTTTGCTGGGTCACTATGAGGGATGCTCA  141

seq1  CCAGAGGCACATCCATTGGATTTGGTGCAGGTCTCCTATACAGATTGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCACATCCATTGGATTTGGTGCAGGTCTCCTATACAGATTGTCG  191

seq1  CAGGTAAGAGCCTTGAAACTTCAGCAGCTGTCATGCTGCAGGAGGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGAGCCTTGAAACTTCAGCAGCTGTCATGCTGCAGGAGGGTCAG  241

seq1  GTCAGAAGCCATGATCCGAACCCGTCAAGCTGACATCTTGGACTATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGCCATGATCCGAACCCGTCAAGCTGACATCTTGGACTATGGTT  291

seq1  GTTAACAGCCGGGCCTCTAGAACTTTATTATATTGATACAAGTCTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGCCGGGCCTCTAGAACTTTATTATATTGATACAAGTCTTCCTG  341

seq1  TATTTAATCCCCAGAACCCACATTAGGCATCCCACAATTACCTGTAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCCCCAGAACCCACATTAGGCATCCCACAATTACCTGTAATTC  391

seq1  CAGCTCTAAGAAATCTAACTTACCCATCTGGTTTCCGAGGGCACCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAAGAAATCTAACTTACCCATCTGGTTTCCGAGGGCACCCAGCA  441

seq1  TGCAAATGGCGCACATACTTTCAAACAGGCATATGCACACACAATAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGGCGCACATACTTTCAAACAGGCATATGCACACACAATAAATA  491

seq1  AAAATAAAATTTAACGATAAAGTCACCATTTCGAAACATGCTAATAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATTTAACGATAAAGTCACCATTTCGAAACATGCTAATAGAAA  541

seq1  CATAAACATGTATTTCAGCTTTCAGAACTTCATTTACATTGTTGATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATGTATTTCAGCTTTCAGAACTTCATTTACATTGTTGATTTTC  591

seq1  AGAGAATGGGAGGTTTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGGAGGTTTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACC  641

seq1  ATGACCAAGGCAAATCTTATAAAGGACACATTTAATTGGGGTTGGTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGGCAAATCTTATAAAGGACACATTTAATTGGGGTTGGTTTAC  691

seq1  AGGTTCTGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGCATC  741

seq1  CAGGCAGGCATGGTGCAAGAGGAGCTGAGAGTTCTACATCTTCATCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCATGGTGCAAGAGGAGCTGAGAGTTCTACATCTTCATCTGAA  791

seq1  GGCTGCTACTCACTTCCAGGCAGCTAGGGTGAGGGTCTTAAGTCCATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTACTCACTTCCAGGCAGCTAGGGTGAGGGTCTTAAGTCCATGCC  841

seq1  CACAGTGACACACCTACTCCAACCAGGTCACACCTACTCCAACAAGGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGACACACCTACTCCAACCAGGTCACACCTACTCCAACAAGGCCA  891

seq1  CACCTCCAAATAGTGCCACTTCTTGGGCCAAGCATATACAAACCATCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAAATAGTGCCACTTCTTGGGCCAAGCATATACAAACCATCACA  941

seq1  GCAGGACTTGGGGCTTTGTGGGACATAAGGCAAGTGGCCAAGCCAAGACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTTGGGGCTTTGTGGGACATAAGGCAAGTGGCCAAGCCAAGACC  991

seq1  CTATAAAAAAGGAGAGAGTCTGGGTCTGGTTCTCCATTCCTTATAGTCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAAAGGAGAGAGTCTGGGTCTGGTTCTCCATTCCTTATAGTCCC  1041

seq1  ACAGTCCTGAACTCACATGGCTTCCATGGTGAGTGGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTGAACTCACATGGCTTCCATGGTGAGTGGGAATTC  1083

seq1: chr13_74016686_74017680
seq2: B6Ng01-080E05.g_256_1229

seq1  TTTCGGCACCAACTGTTGCGCGCGCTCAACAGGCCAGGAAGAACGACGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGCACCAACTGTTGCGCGCGCTCAACAGGCCAGGAAGAACGACGCT  50

seq1  GCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTTT  100

seq1  ATATCTCCCTTGTTCATATCTCCCCTGTTTATATCTCCCCTGTTTATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCCTTGTTCATATCTCCCCTGTTTATATCTCCCCTGTTTATATC  150

seq1  TCCCTTGTTTTTATATCTCCCTTGTTTATATCTCCCTTGTTTTTATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTTTTTATATCTCCCTTGTTTATATCTCCCTTGTTTTTATATCT  200

seq1  CCCCCCTAATAGTAATCCTCTCTCGAATAATAATCCTCCCTCTAGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTAATAGTAATCCTCTCTCGAATAATAATCCTCCCTCTAGCCTGG  250

seq1  GCCTCTCACTCTTTTATACTTTCAGTTCCCATCCACGCACAGCAGGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCACTCTTTTATACTTTCAGTTCCCATCCACGCACAGCAGGCCAC  300

seq1  GCCACCTCACCAGGCATGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCACCAGGCATGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAA  350

seq1  TCTCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCCCAGCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCCCAGCACTC  400

seq1  AAGATGTTTGTGTCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTTGTGTCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTA  450

seq1  GCTACAGTCCCTGGCGCCTTTAGGACTGCCGCCACACCTGCTCCTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTCCCTGGCGCCTTTAGGACTGCCGCCACACCTGCTCCTAACAT  500

seq1  GTGGGTGTGGCTCAGAGGGAAGGCACTCTGTCCTGCTTGCTGAGGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGGCTCAGAGGGAAGGCACTCTGTCCTGCTTGCTGAGGAAGCC  550

seq1  TGGAACCCTGGCTATCTCCCTGGGAACCCAGATTTTTAAATGCCCAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCCTGGCTATCTCCCTGGGAACCCAGATTTTTAAATGCCCAACTT  600

seq1  TCCTGTGATATGCTTACATGGTGTCACAG-AAAATACCTCCAAGGCTCTG  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTGTGATATGCTTACATGGTGTCACAGAAAAATACCTCCAAGGCTCTG  650

seq1  TCCTTCTCAGGAACCATCTATCAGCTGCCTCCAGGAGGGGATCCAGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCAGGAACCATCTATCAGCTGCCTCCAGGAGGGGATCCAGAACA  700

seq1  GCCCACTTTTTACCCATTGGGGAAAAAAGTGTTCTACACTACACAGTGTG  749
      ||| |||||||||||||||||  |||||||||||||||||||||| ||||
seq2  GCCTACTTTTTACCCATTGGG--AAAAAGTGTTCTACACTACACATTGTG  748

seq1  AGCCATCAGCTCTCTCCAAATCCATTGGACCCACCAGCGCCCCTAGTGGT  799
      ||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
seq2  AGCCATCAGCTCTCT-CAAAT-CATTGGACCCA-CAGCG-CCCTAGTGGT  794

seq1  CAGTGCGGCTACACCACAGAGGGTATCCTTTACCTCTGAGCCAGGAAGTA  849
      | |||| ||| ||||| ||| ||||| |||||||||||||||||||||||
seq2  C-GTGC-GCTTCACCAAAGAAGGTAT-CTTTACCTCTGAGCCAGGAAGTA  841

seq1  TTTGTATAGCAGACTCCTGAACAAGTATGTCTTCTTAAACAGGAGGCCAG  899
       |||||||||||||| |||||||||||||||||||| |||| || |||||
seq2  -TTGTATAGCAGACT-CTGAACAAGTATGTCTTCTT-AACA-GAAGCCAG  887

seq1  ACGACTCCTTGCCAACGCCTTAGTATCTC-CAGTCTTTCCCAGGAAAGAG  948
      ||| || |||||||   |||||||| ||| |||  ||||||| ||||   
seq2  ACGCCT-CTTGCCACGCCCTTAGTA-CTCTCAG--TTTCCCAAGAAAAGC  933

seq1  TCCTCTTAGCCTTATCGGGTCCCTTTTTCTACCTCAGCTCTCTAGGC  995
      |||| ||||||||||| |||||  |||||||||| ||||| ||||||
seq2  TCCT-TTAGCCTTATC-GGTCC--TTTTCTACCT-AGCTC-CTAGGC  974