BAC Information

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BAC

Clone NameB6Ng01-080H13
Chromosome13 (Build37)
Map Location 62,581,318 - 62,748,432
singlet/doubletdoublet
Overlap geneLOC100041455, 6720457D02Rik, EG665503, LOC100041493
Upstream geneEG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik
Downstream geneLOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H13.bB6Ng01-080H13.g
ACCDH895601DH895602
length1,0831,167
definitionDH895601|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H13, 5' end.DH895602|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,581,318 - 62,582,407)(62,747,256 - 62,748,432)
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacaggttggat
ttttcctggtctttcagtttcaggggaaataaatcaactacaaaaaaaaa
aaaaaaaaaaaaaaacccacaacgttttaactgattttgagttatgtgtc
aaaattcttaacctacagcaatcagaatttattctacgtactaactcaca
attccctcccagggtcagatgtacagttcaattctgaaccatgttttatt
ttcactccttttgttttctcaattacttaggggggtacttagtgggagag
ttttcctctgcccaggtcaccacatgtatgaccagaacgataatctagct
cacaatccatcccagtccagcagatcagattgtgataggtcagtcaacct
gctcttcctagtcatggaatttactgtcctgaacagtggctgccacactc
agtacagtattccttgttgtctacctcacagctcactagtgctacatcaa
tagagaatcctagaaggatcccacaaggtacctcctactgttactacaga
ttgttagctctgcccagagtccatcactatctagggtcaccaggctgggt
ctcaggacaatagcagcacagctactggatgatgatagatgaaaggattc
agacagcacaggtccattgagctctgcatagccacaatagtggtagacat
ggactgagtttggaaactttgtagttatgaagaattcttgcagtctccca
gagcatgtctccctcttcatcaaggacatcatgtgtacattctattccac
acctatatcctcttcagtcatcaatttgcttcataagtgggaagtcctgc
agaaatcattatgacacattcaaacagtaactattgtcaagaaaaatagc
ctcatgaaaaacaataaattgtctatgagaatt
gaattccatgacagccagagctatacagagaaaccctgtcttgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaagaagcatagagtagaatcactgatgga
aaagactttccaatgataagaaaatgggaagtcacatttagttgagggag
ggactgcctcctgaacacccacagagaagtagcatggtaatcaagcatct
aagagattaggatgctgggatacacagggttgttcatcaggattgtgggg
aaatatcgctccaggtcataacaaaggagacaatcctgattaacaaatag
gccctttccaaggtcacagaccagccctttaacaagctgctcaatgaagt
attgcatactcacaaccaacactaaggcctggtgtgccataaaggaccat
ttttcttcttgaaaaagcatagttctgtcacatggtcaagacatctgtca
acaccatttgggaaggaaaaacactgttgtggcgaggactgtcctgatca
agcaaggccatccctgaggccttcatagatggagaatgacatagcttctt
ctcaaactcagcaacattcttggttgggcctgtaacagcctggggcctag
gccttgggatccttgcctaaggccatgaggtattgacaaagaaacagaaa
aagagctccttttctaaaaccagggcatattgtttgaagagctggtaatg
gtctggggccagagcctgtggagaggggtggtttcttattcccgagaatc
taacagttcctaccacatagggctgatgatgtcaatcacaaaccaccgta
ggcatgcgcaagtgatactgatggagattacttgtgttctccttggagca
gcagtgtttgattagattctttctttgtcccatttgtatgctagttcccc
tgacagaatttagagacgtgacagtccaaagattgtcttgagggtcaaag
agacttcgaacagttgaccactggtgattggtgttgaagatttacggtcc
aggagttagaaataaatgcatttttatccaggaatgaccatgagcctatc
cttaccagggtcagagctatatatgtggaacaagaaggttcgaaagaagt
tgggcttacctttatcttctggggttttccctttggaagattggaggctt
tgtaaaagagcccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62581318_62582407
seq2: B6Ng01-080H13.b_43_1125

seq1  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100

seq1  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGGTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGGTTGGAT  200

seq1  TTTTCCTGGTCTTTCAGTTTCAGGGGAAATAAATCAACTAC--AAAAAAA  248
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TTTTCCTGGTCTTTCAGTTTCAGGGGAAATAAATCAACTACAAAAAAAAA  250

seq1  AAAAAAAAAAAAAAACCCACAACGTTTTAACTGATTTTGAGTTATGTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACCCACAACGTTTTAACTGATTTTGAGTTATGTGTC  300

seq1  AAAATTCTTAACCTACAGCAATCAGAATTTATTCTACGTACTAACTCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTAACCTACAGCAATCAGAATTTATTCTACGTACTAACTCACA  350

seq1  ATTCCCTCCCAGGGTCAGATGTACAGTTCAATTCTGAACCATGTTTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCCCAGGGTCAGATGTACAGTTCAATTCTGAACCATGTTTTATT  400

seq1  TTCACTCCTTTTGTTTTCTCAATTACTTAGGGGGGTACTTAGTGGGAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCCTTTTGTTTTCTCAATTACTTAGGGGGGTACTTAGTGGGAGAG  450

seq1  TTTTCCTCTGCCCAGGTCACCACATGTATGACCAGAACGATAATCTAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTGCCCAGGTCACCACATGTATGACCAGAACGATAATCTAGCT  500

seq1  CACAATCCATCCCAGTCCAGCAGATCAGATTGTGATAGGTCAGTCAACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCATCCCAGTCCAGCAGATCAGATTGTGATAGGTCAGTCAACCT  550

seq1  GCTCTTCCTAGTCATGGAATTTACTGTCCTGAACAGTGGCTGCCACACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTAGTCATGGAATTTACTGTCCTGAACAGTGGCTGCCACACTC  600

seq1  AGTACAGTATTCCTTGTTGTCTACCTCACAGCTCACTAGTGCTACATCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTATTCCTTGTTGTCTACCTCACAGCTCACTAGTGCTACATCAA  650

seq1  TAGAGAATCCTAGAAGGATCCCACAAGGTACCTCCTACTGTTACTACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATCCTAGAAGGATCCCACAAGGTACCTCCTACTGTTACTACAGA  700

seq1  TTGTTAGCTCTGCCCAGAGTCCATCACTATCTAGGGTCACCAGGCTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTCTGCCCAGAGTCCATCACTATCTAGGGTCACCAGGCTGGGT  750

seq1  CTCAGGACAATAGCAGCACAGCTACTGGATGATGATAGATGAAAGGATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAATAGCAGCACAGCTACTGGATGATGATAGATGAAAGGATTC  800

seq1  AGACAGCACAGGTCCATTGAGCTCTGCATAGCCACAATAGTGGTAGACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACAGGTCCATTGAGCTCTGCATAGCCACAATAGTGGTAGACAT  850

seq1  GGACTGAGTTTGGAAACTTTGTAGTTATGAAGAAATTCTTGCAGTCTCCC  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGACTGAGTTTGGAAACTTTGTAGTTATGAAG-AATTCTTGCAGTCTCCC  899

seq1  AGAGCATGTCTCCCTCTTCAATCAAGGAACATCATGTGTACATTCTATTC  948
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  AGAGCATGTCTCCCTCTTC-ATCAAGG-ACATCATGTGTACATTCTATTC  947

seq1  CACACCTATATTCCTCTTCAGTCATCAATTTGCTTCATAGTTGGGAAGTC  998
      |||||||||| ||||||||||||||||||||||||||||  |||||||||
seq2  CACACCTATA-TCCTCTTCAGTCATCAATTTGCTTCATAAGTGGGAAGTC  996

seq1  CTGCAGGAAATCA-TATGACACATTCAAACAGTAACTATTGTTCAAGGAG  1047
      ||||| ||||||| ||||||||||||||||||||||||||| |||| || 
seq2  CTGCA-GAAATCATTATGACACATTCAAACAGTAACTATTG-TCAA-GAA  1043

seq1  AAATAGCCCTCATGAAAAACAATAAATTGTCTATGAAGGAATT  1090
      |||||| |||||||||||||||||||||||||||||  |||||
seq2  AAATAG-CCTCATGAAAAACAATAAATTGTCTATGA--GAATT  1083

seq1: chr13_62747256_62748432
seq2: B6Ng01-080H13.g_72_1238 (reverse)

seq1  TAGTAGGGCTCTTTTACAAAAGCCTCCATATTCTCAAAAAGGAAGAACAC  50
      |||| |||||||||||| |||||||||| ||  || ||| |||| ||| |
seq2  TAGT-GGGCTCTTTTAC-AAAGCCTCCA-ATCTTCCAAAGGGAA-AAC-C  45

seq1  CAAGAAGAGATAAGAGTTTAAAGCCAACATTCTATCTGGAACCTCTTTGA  100
      | |||  ||||||  ||   ||||| |  |||| ||  ||||||  ||| 
seq2  CCAGA--AGATAAAGGT---AAGCCCAACTTCTTTC--GAACCTTCTTGT  88

seq1  TACACCTTATTATGCTCTGACCTTGGTAAGGATAGGCTCATGGTCATTCC  150
      | || | |||   ||||||||| |||||||||||||||||||||||||||
seq2  TCCA-CATATATAGCTCTGACCCTGGTAAGGATAGGCTCATGGTCATTCC  137

seq1  TTGATAAAAATGCATTTA-TTCTAACTTCATGGACCCGTAAAATCTTCAA  199
      | |||||||||||||||| ||||||| || |||| |||| ||||||||||
seq2  TGGATAAAAATGCATTTATTTCTAAC-TCCTGGA-CCGT-AAATCTTCAA  184

seq1  CAGCATACA-CAGTGTTCAACTGTCCAAAGTCTCTTTGACCCTCAAGACA  248
      || ||  || ||||| |||||||| | |||||||||||||||||||||||
seq2  CACCAATCACCAGTGGTCAACTGTTCGAAGTCTCTTTGACCCTCAAGACA  234

seq1  ATCTTTGGACTGTCACGTCTTCTAAATTCTGTCAGCGGAAACTAGCATAC  298
      ||||||||||||||||||| ||||||||||||||| || |||||||||||
seq2  ATCTTTGGACTGTCACGTC-TCTAAATTCTGTCAG-GGGAACTAGCATAC  282

seq1  -AATGGGACAAAGAAAGAATCTAATCAAACACTGCTGCT-CAAGGAGAAC  346
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATGGGACAAAGAAAGAATCTAATCAAACACTGCTGCTCCAAGGAGAAC  332

seq1  ACAAGTAATCT-CATCAGTATCAC-TGCGCATGCCTACGGTGGTTTGTGA  394
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  ACAAGTAATCTCCATCAGTATCACTTGCGCATGCCTACGGTGGTTTGTGA  382

seq1  TTGACATCATCAGCCCTATGTGGTAGGAACTGTTAGATTCTCGGG-ATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGACATCATCAGCCCTATGTGGTAGGAACTGTTAGATTCTCGGGAATAA  432

seq1  GAAACCACCCCTCTCCACAGGCTCTGGCCCCAGACCATTACCAGCTCTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACCCCTCTCCACAGGCTCTGGCCCCAGACCATTACCAGCTCTTC  482

seq1  AAACAATATG-CCTGGTTTTAGAAAAGGAGCTCTTTTTCTGTTTCTTTGT  542
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATGCCCTGGTTTTAGAAAAGGAGCTCTTTTTCTGTTTCTTTGT  532

seq1  CAATACCTCATGGCCTTAGGCAAGGATCCCAAGGCCTAGGCCCCAGGCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTCATGGCCTTAGGCAAGGATCCCAAGGCCTAGGCCCCAGGCTG  582

seq1  TTACAGGCCCAACCAAGAATGTTGCTGAGTTTGAGAAGAAGCTATGTCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCCCAACCAAGAATGTTGCTGAGTTTGAGAAGAAGCTATGTCAT  632

seq1  TCTCCATCTATGAAGGCCTCAGGGATGGCCTTGCTTGATCAGGACAGTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTATGAAGGCCTCAGGGATGGCCTTGCTTGATCAGGACAGTCC  682

seq1  TCGCCACAACAGTGTTTTTCCTTCCCAAATGGTGTTGACAGATGTCTTGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACAACAGTGTTTTTCCTTCCCAAATGGTGTTGACAGATGTCTTGA  732

seq1  CCATGTGACAGAACTATGCTTTTTCAAGAAGAAAAATGGTCCTTTATGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGACAGAACTATGCTTTTTCAAGAAGAAAAATGGTCCTTTATGGC  782

seq1  ACACCAGGCCTTAGTGTTGGTTGTGAGTATGCAATACTTCATTGAGCAGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGCCTTAGTGTTGGTTGTGAGTATGCAATACTTCATTGAGCAGC  832

seq1  TTGTTAAAGGGCTGGTCTGTGACCTTGGAAAGGGCCTATTTGTTAATCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGGGCTGGTCTGTGACCTTGGAAAGGGCCTATTTGTTAATCAG  882

seq1  GATTGTCTCCTTTGTTATGACCTGGAGCGATATTTCCCCACAATCCTGAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCTCCTTTGTTATGACCTGGAGCGATATTTCCCCACAATCCTGAT  932

seq1  GAACAACCCTGTGTATCCCAGCATCCTAATCTCTTAGATGCTTGATTACC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCCTGTGTATCCCAGCATCCTAATCTCTTAGATGCTTGATTACC  982

seq1  ATGCTACTTCTCTGTGGGTGTTCAGGAGGCAGTCCCTCCCTCAACTAAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTCTCTGTGGGTGTTCAGGAGGCAGTCCCTCCCTCAACTAAAT  1032

seq1  GTGACTTCCCATTTTCTTATCATTGGAAAGTCTTTTCCATCAGTGATTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCCCATTTTCTTATCATTGGAAAGTCTTTTCCATCAGTGATTCT  1082

seq1  ACTCTATGCTTCTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGCTTCTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAG  1132

seq1  GGTTTCTCTGTATAGCTCTGGCTGTCATGGAATTC  1177
      |||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTATAGCTCTGGCTGTCATGGAATTC  1167