BAC Information

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BAC

Clone NameB6Ng01-080L17
Chromosome13 (Build37)
Map Location 64,854,746 - 64,960,975
singlet/doubletdoublet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080L17.bB6Ng01-080L17.g
ACCDH895787DH895788
length1,0221,038
definitionDH895787|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L17, 5' end.DH895788|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,854,746 - 64,855,536)(64,959,932 - 64,960,975)
sequence
gaattcatcattagcaattagtacctagaaattttatataatttctgtaa
agcagtatgtgtaggtatttatgacttaatcatgcttctaattagattgt
gcctttattagttgtaagatgcatcaataagtgagagcttattgcttgga
ttctgagactggagtagtctgaaaagcaacatagcaaaatatagtttccc
ttataagaaaaataacattaaagtaataaataagcaaactaaagaaaaat
aacattgaagtaataaataagcaaaatacagttttctgagaacaataaca
ttaaagtaataagtaagcaaactaaagaaaagcttacactatccacaact
ctgatctttaagcatatgaacaaagaataaagaaataaagaataaagaaa
taagacctagttataaataataatcataaaacatagcagtctgatgatgg
ggatgatgacagagacaggggatgcaagaccaggattctgaaaggcttcc
atgtctagcttccacgtaggaaagaaagcatgagataattgttgtcttaa
tttaggttttattgctgtgaggagacaacaagaccacaacaactgttata
aaagaaaccattcaatttatgggctggcttccagtttcagaggtttagtt
cattgtcatcatgataggaagcatgcagcaggcaggcagacttggtgctg
gaggagccaagagttctgtatctggatccatagacagcagaaggagactg
aattccacactggatagagcttgagaatagacctcaaagcctgccctgcc
cccacagtgacatacctcctccaacaaggtgacactttctaatagtgcca
atagaccaaacattcaaacacatgagtgtatgggaggcatacctatttaa
accaccatattccactccctggccccgtaggcttgtatccataacacaat
agaaaatgcacgaaaggatggaccactagagactgccatatccagggatc
atcccataatcagcttccaaac
gaattcaattgtttccttggagcactgaagtttaaaagtggggaaaaaac
aacaggcaaaatgtgatcatgtaagaataaaacagtggcagagcttggcg
tccctgtcacagtccccagatatgtctttaggaaaataagagctcttaaa
aattagcctgtgctgttcatcaaaaggcacaaaatgtaggagaagtcaat
gacttctcagtacaatctcactcagaagtgtatgggtcagaatgggtgtt
ataaatcttactacctctctttttcattttaactgtttgcagtactagaa
atgtaacttgtggtttctcacaggaaaaactacccatcccgtcctcttga
atgtttctcctaaatgtctctttgaataaatgtataagtacttttgttta
tatcatactcaatacggtacttcctgctgtagctttttagtatcttgtct
tggcaaagggtaagtcctgggacatgcatgtggacaactgaacacacagg
tccgcagacatgacagaaatgatttattaacctatgtcacatcaagcact
ttctacactctgggaagagctgtacaactgggggtcatatgtcacctagg
caactacaaaaacaatgcaaagtccatttatttgcttataattcttctga
ctcttggtttaatgagaatctataagcatcttaaatttactatatattta
cattttataggtttcaatcccccatcatatatatatatatatgtatatat
atatatacacacacacacatacatacatacatacacacacatatatatgt
gtgtgtgtatgtgtatatatatttaggaattacctcatcttatatttttt
ctacttttttttttttgttccaaaaggagctggtggatggacaccgcttg
tatcaaataaatatcagtggctgcagattgaccttggagaacgaatggag
gtcactgctgtggccaccagggtggatacggagtctgactgggtgacagt
acctcctgatgttcagtgatggtggatgtactggaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64854746_64855536
seq2: B6Ng01-080L17.b_47_837

seq1  GAATTCATCATTAGCAATTAGTACCTAGAAATTTTATATAATTTCTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTAGCAATTAGTACCTAGAAATTTTATATAATTTCTGTAA  50

seq1  AGCAGTATGTGTAGGTATTTATGACTTAATCATGCTTCTAATTAGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATGTGTAGGTATTTATGACTTAATCATGCTTCTAATTAGATTGT  100

seq1  GCCTTTATTAGTTGTAAGATGCATCAATAAGTGAGAGCTTATTGCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATTAGTTGTAAGATGCATCAATAAGTGAGAGCTTATTGCTTGGA  150

seq1  TTCTGAGACTGGAGTAGTCTGAAAAGCAACATAGCAAAATATAGTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACTGGAGTAGTCTGAAAAGCAACATAGCAAAATATAGTTTCCC  200

seq1  TTATAAGAAAAATAACATTAAAGTAATAAATAAGCAAACTAAAGAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAAAATAACATTAAAGTAATAAATAAGCAAACTAAAGAAAAAT  250

seq1  AACATTGAAGTAATAAATAAGCAAAATACAGTTTTCTGAGAACAATAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAAGTAATAAATAAGCAAAATACAGTTTTCTGAGAACAATAACA  300

seq1  TTAAAGTAATAAGTAAGCAAACTAAAGAAAAGCTTACACTATCCACAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAATAAGTAAGCAAACTAAAGAAAAGCTTACACTATCCACAACT  350

seq1  CTGATCTTTAAGCATATGAACAAAGAATAAAGAAATAAAGAATAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTTAAGCATATGAACAAAGAATAAAGAAATAAAGAATAAAGAAA  400

seq1  TAAGACCTAGTTATAAATAATAATCATAAAACATAGCAGTCTGATGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTAGTTATAAATAATAATCATAAAACATAGCAGTCTGATGATGG  450

seq1  GGATGATGACAGAGACAGGGGATGCAAGACCAGGATTCTGAAAGGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGACAGAGACAGGGGATGCAAGACCAGGATTCTGAAAGGCTTCC  500

seq1  ATGTCTAGCTTCCACGTAGGAAAGAAAGCATGAGATAATTGTTGTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGCTTCCACGTAGGAAAGAAAGCATGAGATAATTGTTGTCTTAA  550

seq1  TTTAGGTTTTATTGCTGTGAGGAGACAACAAGACCACAACAACTGTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTTATTGCTGTGAGGAGACAACAAGACCACAACAACTGTTATA  600

seq1  AAAGAAACCATTCAATTTATGGGCTGGCTTCCAGTTTCAGAGGTTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCATTCAATTTATGGGCTGGCTTCCAGTTTCAGAGGTTTAGTT  650

seq1  CATTGTCATCATGATAGGAAGCATGCAGCAGGCAGGCAGACTTGGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCATCATGATAGGAAGCATGCAGCAGGCAGGCAGACTTGGTGCTG  700

seq1  GAGGAGCCAAGAGTTCTGTATCTGGATCCATAGACAGCAGAAGGAGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCCAAGAGTTCTGTATCTGGATCCATAGACAGCAGAAGGAGACTG  750

seq1  AATTCCACACTGGATAGAGCTTGAGAATAGACCTCAAAGCC  791
      |||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACACTGGATAGAGCTTGAGAATAGACCTCAAAGCC  791

seq1: chr13_64959932_64960975
seq2: B6Ng01-080L17.g_69_1106 (reverse)

seq1  GTTTCCAGTTCCTTCCACCATCACTGAACATCAGGAGGTAACTGGTCACC  50
      |||||||| | | |||||||||||||||||||||||||| ||| ||||||
seq2  GTTTCCAG-TACATCCACCATCACTGAACATCAGGAGGT-ACT-GTCACC  47

seq1  CAGTCAGAACTCCCGTATCCACCCTGGGTGGCCACAGCAGTGACCTCCAT  100
      ||||||| ||| ||||||||||||| ||||||||||||||||||||||||
seq2  CAGTCAG-ACT-CCGTATCCACCCT-GGTGGCCACAGCAGTGACCTCCAT  94

seq1  TCGTTCTCCAAGGTCAATCTGCAGCCACTGATATTTATTTGATACAAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTCCAAGGTCAATCTGCAGCCACTGATATTTATTTGATACAAGCG  144

seq1  GTGTCCATCCACCAGCTCCTTTTTGGAAC-AAAAAAAAAAAGTAGAAAAA  199
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GTGTCCATCCACCAGCTCC-TTTTGGAACAAAAAAAAAAAAGTAGAAAAA  193

seq1  ATATAAGATGAGGTAATTCCTAAATATATATACACATACACACACACATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATGAGGTAATTCCTAAATATATATACACATACACACACACATA  243

seq1  TATATGTGTGTGTATGTATGTATGTATGTGTGTGTGTGTATATATATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTGTGTATGTATGTATGTATGTGTGTGTGTGTATATATATATA  293

seq1  TACATATATATATATATATGATGGGGGATTGAAACCTATAAAATGTAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATATATATATATGATGGGGGATTGAAACCTATAAAATGTAAAT  343

seq1  ATATAGTAAATTTAAGATGCTTATAGATTCTCATTAAACCAAGAGTCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTAAATTTAAGATGCTTATAGATTCTCATTAAACCAAGAGTCAGA  393

seq1  AGAATTATAAGCAAATAAATGGACTTTGCATTGTTTTTGTAGTTGCCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATAAGCAAATAAATGGACTTTGCATTGTTTTTGTAGTTGCCTAG  443

seq1  GTGACATATGACCCCCAGTTGTACAGCTCTTCCCAGAGTGTAGAAAGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATATGACCCCCAGTTGTACAGCTCTTCCCAGAGTGTAGAAAGTGC  493

seq1  TTGATGTGACATAGGTTAATAAATCATTTCTGTCATGTCTGCGGACCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGACATAGGTTAATAAATCATTTCTGTCATGTCTGCGGACCTGT  543

seq1  GTGTTCAGTTGTCCACATGCATGTCCCAGGACTTACCCTTTGCCAAGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTTGTCCACATGCATGTCCCAGGACTTACCCTTTGCCAAGACA  593

seq1  AGATACTAAAAAGCTACAGCAGGAAGTACCGTATTGAGTATGATATAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAAAAAGCTACAGCAGGAAGTACCGTATTGAGTATGATATAAAC  643

seq1  AAAAGTACTTATACATTTATTCAAAGAGACATTTAGGAGAAACATTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACTTATACATTTATTCAAAGAGACATTTAGGAGAAACATTCAAG  693

seq1  AGGACGGGATGGGTAGTTTTTCCTGTGAGAAACCACAAGTTACATTTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGGGATGGGTAGTTTTTCCTGTGAGAAACCACAAGTTACATTTCTA  743

seq1  GTACTGCAAACAGTTAAAATGAAAAAGAGAGGTAGTAAGATTTATAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAAACAGTTAAAATGAAAAAGAGAGGTAGTAAGATTTATAACAC  793

seq1  CCATTCTGACCCATACACTTCTGAGTGAGATTGTACTGAGAAGTCATTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGACCCATACACTTCTGAGTGAGATTGTACTGAGAAGTCATTGA  843

seq1  CTTCTCCTACATTTTGTGCCTTTTGATGAACAGCACAGGCTAATTTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTACATTTTGTGCCTTTTGATGAACAGCACAGGCTAATTTTTAA  893

seq1  GAGCTCTTATTTTCCTAAAGACATATCTGGGGACTGTGACAGGGACGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTATTTTCCTAAAGACATATCTGGGGACTGTGACAGGGACGCCA  943

seq1  AGCTCTGCCACTGTTTTATTCTTACATGATCACATTTTGCCTGTTGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCACTGTTTTATTCTTACATGATCACATTTTGCCTGTTGTTTT  993

seq1  TTCCCCACTTTTAAACTTCAGTGCTCCAAGGAAACAATTGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTTTTAAACTTCAGTGCTCCAAGGAAACAATTGAATTC  1038