BAC Information

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BAC

Clone NameB6Ng01-080O06
Chromosome13 (Build37)
Map Location 20,103,093 - 20,269,753
singlet/doubletdoublet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080O06.bB6Ng01-080O06.g
ACCDH895902DH895903
length9231,056
definitionDH895902|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O06, 5' end.DH895903|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,103,093 - 20,103,998)(20,268,676 - 20,269,753)
sequence
gaattcattggtataaggcagaaaaccaggcttcatttctcagtagggtg
atctgaaattcttcagcaaatcctagagtgtcctgacatgggtcaaaaaa
gcctgaaagcactgaattcagcttcttttttttttttttttttttttttt
ttttggttcaggaatggtatctgggtctctgttcctctgtctgaaaacaa
accattcagtttttgcttttaacaaaagttttgttacccataaaaattct
ttaaacccagttaggaattgttggattcttcttgggaagtgccagcgaga
agagtaagagggggggctggagaaagaagaggaagcggggggtctgatag
aggaggcataggtggatcaggataggtggagcacatcaggataggtggag
cactgggtggaggagtgggataggtggagcacagagggctagggggagca
cagggtggagaaaaataaggctgttgggaatttatatttagttttaacac
aatctcttgttttgttaatctcctgctttttgatgtctttctttaatcct
gatactgtttccagaaccctcttattcatttcctgtaaattgaccctctt
gttcttcttttcggcttctaaattccaatttaagtgaactgcctattcat
tatcatcccttattgcctaggacttcttgttttatttaaaagtacacatt
ggggagccactttatatttagctaggtctcccaatttttcccaatacttg
cagttgaagctctgtaattatcacacataaagcctgctagagtaccagat
ggcagcgtatctacacacttcctcctttgaaaccttgtgcctacctctta
tcttcccatcctcatttacctacacctctgcctttatccctttttggttg
gtttgttggtgttggttggatgg
gaattcaacgggaaactgtgaacacctgcacttcatgtgaggaccgtaag
ctaactcaattctgtcactcacagctgtagggaactctgttcatccaact
tctctaaggcttctttagggtagtaggcccacaccagctgctactgcctg
accacgtctgcgagccccatctctgacaccagtgactggcaccaaataca
aatgggacccaaacaagtctggttttggtgactgcccaagaagtgtaaga
aaaaagcttgctctctctctctctctctctctctctctctctctctctct
tccccaagcctgggaagctaaaactgtctgcagatctgtgcccttcatgt
gtggtaaaaccttgaaagaagaaaaagaggcaagaagggcaaaagccaat
ggagggagggatggcaagaagatgggagggcaaggtcctagctgccaacc
ttctagtttctatcactttgccaacctaaattcccttcctagacgcagga
acaaatgaattttcttgttttctgtgaatttgaacacaggttctgttgct
tggaattgaaagactcctgatccatggttcttatcacacttgtttcctgc
cctgagtttttattttgtcattagatggctggcataaaacacagtccact
tatacaactaatgtttgccactcggtggtaatagactctggtcctccaat
tgtgggatttctataccacctcgtcctcaggccttagagctgttttccac
tctgggactgcaagctcacttctggaactggtctctcttcagcatctctc
acacaacatgacttctctgagatattaagtaatggtagaagaaagaggaa
ggggagaaagtcaagcgtttgggaaaaatgggatcaatagagctactatt
actgtggtatacacataatacccttccaaacatggtctgaaataagtacc
attacagccagcaactagtcctatgctccatccctacattcagaggacag
ctcacctggctgaacagcaccatgaatacttgctggactgtctttaaaag
caggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20103093_20103998
seq2: B6Ng01-080O06.b_47_953

seq1  GAATTCATTGGTATAAGGCAGAAAACCAGGCTTCATTTCTCAGTAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTATAAGGCAGAAAACCAGGCTTCATTTCTCAGTAGGGTG  50

seq1  ATCTGAAATTCTTCAGCAAATCCTAGAGTGTCCTGACATGGGTCAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATTCTTCAGCAAATCCTAGAGTGTCCTGACATGGGTCAAAAAA  100

seq1  GCCTGAAAGCACTGAATTCAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAGCACTGAATTCAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTT  150

seq1  TTTTGGTTCAGGAATGGTATCTGGGTCTCTGTTCCTCTGTCTGAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTCAGGAATGGTATCTGGGTCTCTGTTCCTCTGTCTGAAAACAA  200

seq1  ACCATTCAGTTTTTGCTTTTAACAGAAGTTTTGTTACCCATAAGAATTCT  250
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  ACCATTCAGTTTTTGCTTTTAACAAAAGTTTTGTTACCCATAAAAATTCT  250

seq1  TTAAACCCAGTTAGGAATTGTTGGATTCTTCTTGGGAAGTGCCAGCGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCAGTTAGGAATTGTTGGATTCTTCTTGGGAAGTGCCAGCGAGA  300

seq1  AGAGTAAGAGGGTGGGCTGGAGAAAGAAGAGGAAGCGGGGGGTCTGATAG  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAGGGGGGGCTGGAGAAAGAAGAGGAAGCGGGGGGTCTGATAG  350

seq1  AGGAGGCATAGGTGGATCAGGATAGGTGGAGCACATCAGGATAGGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCATAGGTGGATCAGGATAGGTGGAGCACATCAGGATAGGTGGAG  400

seq1  CACTGGGTGGAGGAGTGGGATAGGTGGAGCACAGAGGGCTAGGGGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTGGAGGAGTGGGATAGGTGGAGCACAGAGGGCTAGGGGGAGCA  450

seq1  CAGGGTGGAGAAGAGTAAGGCTGTTGGGAATTTATATTTAGTTTTAACAC  500
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGAGAAAAATAAGGCTGTTGGGAATTTATATTTAGTTTTAACAC  500

seq1  AATCTCTTGTTTTGTTAATCTCCTGCTTTTTGATGTCTTTCTTTAATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTGTTTTGTTAATCTCCTGCTTTTTGATGTCTTTCTTTAATCCT  550

seq1  GATACTGTTTCCAGAACCCTCTTATTCATTTCCTGTAAATTGACCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTTCCAGAACCCTCTTATTCATTTCCTGTAAATTGACCCTCTT  600

seq1  GTTCTTCTTTTCGGCTTCTAAATTCCAATTTAAGTGAACTGCCTATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTTTCGGCTTCTAAATTCCAATTTAAGTGAACTGCCTATTCAT  650

seq1  TATCATCCCTTATTGCCTAGGACTTCTTGTTTTATTTAAAAGTACACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCCTTATTGCCTAGGACTTCTTGTTTTATTTAAAAGTACACATT  700

seq1  GGGGAGCCACTTTATATTTAGCTAGGTCTCCCAATTTTTCCAAATACTTG  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGGAGCCACTTTATATTTAGCTAGGTCTCCCAATTTTTCCCAATACTTG  750

seq1  CAAGTTGAAGCTCTGTAATTATCACACATAAAGCCTGCTAGAGTACCAGA  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGTTGAAGCTCTGTAATTATCACACATAAAGCCTGCTAGAGTACCAGA  799

seq1  TGGCAGCGTATCTACACACTTCCTCCTTTGAAACCTTGTGCCTACCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGTATCTACACACTTCCTCCTTTGAAACCTTGTGCCTACCTCTT  849

seq1  ATCTTCCCATCCTCATTTACCTACACCTCTGCTTTTTTATCCTTTTTTTG  900
      ||||||||||||||||||||||||||||||||   ||||||| ||||| |
seq2  ATCTTCCCATCCTCATTTACCTACACCTCTGC--CTTTATCCCTTTTTGG  897

seq1  TTTGTT----  906
      || |||    
seq2  TTGGTTTGTT  907

seq1: chr13_20268676_20269753
seq2: B6Ng01-080O06.g_69_1124 (reverse)

seq1  CACCTGCTTTTTAAAAGAATGCTCCAGAAAGTGTATCATGGGTTGCTGTT  50
      |||||||||||  |||||  | ||||| |||| | ||||||  ||||| |
seq2  CACCTGCTTTT--AAAGACAG-TCCAGCAAGTAT-TCATGG--TGCTG-T  43

seq1  TCAGGCAGGTGTAGCCTGTCTTCTG-ATGTATGTGGATGTGAGGCATAGG  99
      |||| |||||| || ||||| |||| |||||   ||||| || |||||||
seq2  TCAGCCAGGTG-AG-CTGTCCTCTGAATGTA--GGGATG-GA-GCATAGG  87

seq1  ACATGTTGCTTGGCCTGTAATGGTACTTATTTCAGACCACTGTTTGGAAG  149
      ||  ||||||  | ||||||||||||||||||||||||| ||||||||||
seq2  ACTAGTTGCT--GGCTGTAATGGTACTTATTTCAGACCA-TGTTTGGAAG  134

seq1  GGTATATAGTGTATACCACAGTTATTAGTAGCTACTATTTGATTCCATGT  199
      |||||   ||||||||||||| || |||||||| ||| ||||| |||| |
seq2  GGTATTATGTGTATACCACAG-TAATAGTAGCT-CTA-TTGATCCCAT-T  180

seq1  TTTCCAAGACGCTTGACTCTCTCCCCTTCCTCTTTTTCTTCTTCCATTAC  249
      ||||| | |||||||||| |||||||||||||  |||||||| |||||||
seq2  TTTCCCAAACGCTTGACTTTCTCCCCTTCCTC--TTTCTTCTACCATTAC  228

seq1  TTAATATCTCAGAGAAGTCATGTTGTGTGAGAGATGCTGAAGAGAGACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTCAGAGAAGTCATGTTGTGTGAGAGATGCTGAAGAGAGACCA  278

seq1  GTTCCAGAAGTGAGCTTGCAGTCCCAGAGTGGAAAACAGCTCCTAAGGCC  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTCCAGAAGTGAGCTTGCAGTCCCAGAGTGGAAAACAGCT-CTAAGGCC  327

seq1  TGAGGACGAGGTGGTATAGAAATCCCACAATTGGAGGACCAGAGTCTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACGAGGTGGTATAGAAATCCCACAATTGGAGGACCAGAGTCTATT  377

seq1  ACCACCGAGTGGCAAACATTAGTTGTATAAGTGGACTGTGTTTTATGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGAGTGGCAAACATTAGTTGTATAAGTGGACTGTGTTTTATGCCA  427

seq1  GCCATCTAATGACAAAATAAAAACTCAGGGCAGGAAACAAGTGTGATAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTAATGACAAAATAAAAACTCAGGGCAGGAAACAAGTGTGATAAG  477

seq1  AACCATGGATCAGGAGTCTTTCAATTCCAAGCAACAGAACCTGTGTTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGGATCAGGAGTCTTTCAATTCCAAGCAACAGAACCTGTGTTCAA  527

seq1  ATTCACAGAAAACAAGAAAATTCATTTGTTCCTGCGTCTAGGAAGGGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGAAAACAAGAAAATTCATTTGTTCCTGCGTCTAGGAAGGGAAT  577

seq1  TTAGGTTGGCAAAGTGATAGAAACTAGAAGGTTGGCAGCTAGGACCTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGGCAAAGTGATAGAAACTAGAAGGTTGGCAGCTAGGACCTTGC  627

seq1  CCTCCCATCTTCTTGCCATCCCTCCCTCCATTGGCTTTTGCCCTTCTTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATCTTCTTGCCATCCCTCCCTCCATTGGCTTTTGCCCTTCTTGC  677

seq1  CTCTTTTTCTTCTTTCAAGGTTTTACCACACATGAAGGGCACAGATCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTTCTTTCAAGGTTTTACCACACATGAAGGGCACAGATCTGC  727

seq1  AGACAGTTTTAGCTTCCCAGGCTTGGGGAAGAGAGAGAGAGAGAGAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTTTAGCTTCCCAGGCTTGGGGAAGAGAGAGAGAGAGAGAGAGA  777

seq1  GAGAGAGAGAGAGAGAGAGCAAGCTTTTTTCTTACACTTCTTGGGCAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGCAAGCTTTTTTCTTACACTTCTTGGGCAGTC  827

seq1  ACCAAAACCAGACTTGTTTGGGTCCCATTTGTATTTGGTGCCAGTCACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCAGACTTGTTTGGGTCCCATTTGTATTTGGTGCCAGTCACTG  877

seq1  GTGTCAGAGATGGGGCTCGCAGACGTGGTCAGGCAGTAGCAGCTGGTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAGATGGGGCTCGCAGACGTGGTCAGGCAGTAGCAGCTGGTGTG  927

seq1  GGCCTACTACCCTAAAGAAGCCTTAGAGAAGTTGGATGAACAGAGTTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACTACCCTAAAGAAGCCTTAGAGAAGTTGGATGAACAGAGTTCCC  977

seq1  TACAGCTGTGAGTGACAGAATTGAGTTAGCTTACGGTCCTCACATGAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGTGAGTGACAGAATTGAGTTAGCTTACGGTCCTCACATGAAGT  1027

seq1  GCAGGTGTTCACAGTTTCCCGTTGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  GCAGGTGTTCACAGTTTCCCGTTGAATTC  1056