BAC Information

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BAC

Clone NameB6Ng01-080O09
Chromosome13 (Build37)
Map Location 49,535,381 - 49,536,009
singlet/doubletsinglet
Overlap geneIppk
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2
Downstream geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080O09.bB6Ng01-080O09.g
ACCDH895908DH895909
length123777
definitionDH895908|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O09, 5' end.DH895909|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caactcaactacatataagtgtgaagctagcctaggcaacatgatgctgt
tttgtctcttcaaaacaagaaagagcagaggaagggaggcagggagagat
ggaaggaggggagagggaaggga
gaattctctctgtaaaccaggctagccttgaacttgcagaaatctgccta
cctctacctcccaaacgctagaattaaaggtgtgcaccaccatgcccagt
ttctttctgacactttaaatgtcctcttctcatccctctgtcctagttag
ggtttccattgctatgataaaacaccgtgaccaaaactgacttaaggaag
aatgggtttatttcatcttacactgccgtttctgtcactgaggaaagtca
gggaaagaagtcaagcagggcagaaacccagaagcaggaactaaagcaaa
agccatggagagctgcttatgggcttgtttgccaatggtttgctcagcct
gcttagacaactcaggaccacccacccagaggtgactgtattccttgtag
ggtactgccctctatggaatgggccctcctacatcaatcattagtcaaga
aaatgtcccacaggctactctaatggagacacttgcttaactgaggttct
ctcttcccaaatgactctagcttatgtcaaggtgacataaaactagctag
ctcactatctgtagccccatgggaaacaaacatgaaactattaaatgcac
agcagcctggcagcctccatgaagaacacagaacagggcaggcacatgca
cagcctcagcctaagaacggtcattaccgccctgcctgactctcagttcc
aagaaggctgtcctttgcatggttgtctttactgacctgattgagagctc
atacactcccagaggtcttttgggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49535381_49536009
seq2: B6Ng01-080O09.g_70_698 (reverse)

seq1  GTGTTCTTCATGGAGGCTGCCAGGCTGCTGTGCATTTAATAGTTTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTCATGGAGGCTGCCAGGCTGCTGTGCATTTAATAGTTTCATGT  50

seq1  TTGTTTCCCATGGGGCTACAGATAGTGAGCTAGCTAGTTTTATGTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCATGGGGCTACAGATAGTGAGCTAGCTAGTTTTATGTCACCT  100

seq1  TGACATAAGCTAGAGTCATTTGGGAAGAGAGAACCTCAGTTAAGCAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAGCTAGAGTCATTTGGGAAGAGAGAACCTCAGTTAAGCAAGTG  150

seq1  TCTCCATTAGAGTAGCCTGTGGGACATTTTCTTGACTAATGATTGATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTAGAGTAGCCTGTGGGACATTTTCTTGACTAATGATTGATGTA  200

seq1  GGAGGGCCCATTCCATAGAGGGCAGTACCCTACAAGGAATACAGTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCCATTCCATAGAGGGCAGTACCCTACAAGGAATACAGTCACCT  250

seq1  CTGGGTGGGTGGTCCTGAGTTGTCTAAGCAGGCTGAGCAAACCATTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGGTGGTCCTGAGTTGTCTAAGCAGGCTGAGCAAACCATTGGCA  300

seq1  AACAAGCCCATAAGCAGCTCTCCATGGCTTTTGCTTTAGTTCCTGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCATAAGCAGCTCTCCATGGCTTTTGCTTTAGTTCCTGCTTCT  350

seq1  GGGTTTCTGCCCTGCTTGACTTCTTTCCCTGACTTTCCTCAGTGACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGCCCTGCTTGACTTCTTTCCCTGACTTTCCTCAGTGACAGAA  400

seq1  ACGGCAGTGTAAGATGAAATAAACCCATTCTTCCTTAAGTCAGTTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGTGTAAGATGAAATAAACCCATTCTTCCTTAAGTCAGTTTTGGT  450

seq1  CACGGTGTTTTATCATAGCAATGGAAACCCTAACTAGGACAGAGGGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGTTTTATCATAGCAATGGAAACCCTAACTAGGACAGAGGGATGA  500

seq1  GAAGAGGACATTTAAAGTGTCAGAAAGAAACTGGGCATGGTGGTGCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACATTTAAAGTGTCAGAAAGAAACTGGGCATGGTGGTGCACAC  550

seq1  CTTTAATTCTAGCGTTTGGGAGGTAGAGGTAGGCAGATTTCTGCAAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTAGCGTTTGGGAGGTAGAGGTAGGCAGATTTCTGCAAGTTC  600

seq1  AAGGCTAGCCTGGTTTACAGAGAGAATTC  629
      |||||||||||||||||||||||||||||
seq2  AAGGCTAGCCTGGTTTACAGAGAGAATTC  629