BAC Information

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BAC

Clone NameB6Ng01-081B04
Chromosome13 (Build37)
Map Location 57,171,033 - 57,295,380
singlet/doubletdoublet
Overlap geneLOC100040995
Upstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
Downstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081B04.bB6Ng01-081B04.g
ACCDH896027DH896028
length1,0991,096
definitionDH896027|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B04, 5' end.DH896028|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,294,265 - 57,295,380)(57,171,033 - 57,172,136)
sequence
gaattcacactacaccatagctccagtgcctacacagctccaacataatg
gaggcctcaagttttcctgtaggttgttcagtgtggcagcagttgattat
gggaaaccaagatttgaatgagaaataaagttatagcaaacagatggcag
atgccatttcactgaccttggtgttatccatgtcaaagggctgacagtgt
atcacagttaacacccaagggctggtaggatttgtctcaaagcaagtaaa
gtcccctgaactactggagaatgtttaagggtgttatggccacaaaagag
taagcttgagaaattttatttttctctgaatcatgattccatttttttgg
ggggataacccccaaaatataagcaaccaaagtagaaacaaattgagtaa
cataaaactaacagctgctgtgcatccaaaattgactgagtgagaagatg
gcttaaacagtaggaaacaatatgtgtaaatcacatacctgctaatgagt
tagaaccaaccaatcaaccaatcagccagtcagccaaccagtcagccaat
taaccagccagccagccaaccagccaaccaggcaaccaaccaaccaacca
accaatcatccaaccaatgaaccaaccaaccaaccatcagacagacagac
agacagctagacagccagacagccaagcaaccagccagccagccagccag
gcaaccaaccagacagacagacagacagacatcaacaacaagtgcaataa
aaagatgaacaaaagttctgagaagatattttttcccaaagaagatacac
agacaatcagcatatgcaaagatgatcaaggccactgtcactaggaaaac
acagatgggacaaggaagaaatgggaattacttagtttgtctgactatag
tgatatatgattagtaaggtgtgaaaatctgcacacaatagatatataat
taataacagcattgtacattacaaatggattagaagggtctagagagatg
gctgttagatatttactgctctgcagaggaccaggctcagtcctcagaac
tcacagtagctcacactgctgttactcagctccatggagctgaaacccc
gaattccaactcaattcttcacagagctagaaatggcaattagcaaattc
ttctggaataacaaaaaacctaggatagcgaaaactattctcaacaataa
aagaagagttataatgtttaataaagcacagagttaaagagaaaagaagc
cagtatttttttcaaaacacatattaagcaagggagtctttagaatcttt
tagaagttagccacaaggattcagtatagttagagagttaggaggccaga
ggccatcagtctttaaagcaatgtccaaaactgtgtcccacttcaagccc
attccaggccaggcagtctcatggcactttcctaatgaaattgtttgtcc
ataaggtcatatattaaattaggagtggttttgcaaattggaataatttt
ttcacctgatttacttaaggttattttttgaaaagtagtttatattgggt
caggcgtagtggtacattcctatagtctcagcattcagaagtagaggcag
gaggattgaccaggctatatagtgggtactagaccatccagagccacaaa
tggagacactgtcacagacaggcaggagtttatagagtgtttccgaccct
tctctgataacacaaggtagggtcacctgggaagagggaagctcaattga
gaaatgtctccatcagaatggccctgtaggagagtctgtagggcattttc
ataattggtgactgacgtgtggaccttgtgagcagagagccatccctgtg
cggtggtcttgggttgtataataaatcaggttgagtaggcaacggagagc
aagcagcccttctctgtgactcctgcctctaaccccgcttctgggtcctg
ctctggtatccccccagtggtgagctgcgatgggggaaccccaaacaaac
cctttccttttccatgatgcttttggtcacagcttttgtcacgacaggaa
gtagatgggccatgtgcacagcaaagtgactcagcaaactagagcggggc
ctgggtttcgatgcctcatcaactctacagactgtgccctcctcctagct
gagtggctggatcaaccttgtttggcccagttggctagcacctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57294265_57295380
seq2: B6Ng01-081B04.b_46_1144 (reverse)

seq1  GGGGTTTCAGCTCCCCTGGAGCTGAAGTTAACAGGCAGTTGTGAGCTACC  50
      |||||||||||| || |||||||||   ||||| |||| |||||||||| 
seq2  GGGGTTTCAGCT-CCATGGAGCTGA--GTAACA-GCAG-TGTGAGCTAC-  44

seq1  TTGTGAGTTCTGAGAACTGAGCCTGGGTCCTCTGCAGAAGCAGTAAATAT  100
       ||||||||||||| ||||||||| |||||||||||| ||||||||||||
seq2  -TGTGAGTTCTGAGGACTGAGCCT-GGTCCTCTGCAG-AGCAGTAAATAT  91

seq1  TCTTAACCAAGCCATCTCTCTAGACCCTTCTTAATCCATTTGTAATGTAA  150
         ||||  ||||||||||||||||||||| ||||||||||||||||| |
seq2  --CTAAC--AGCCATCTCTCTAGACCCTTC-TAATCCATTTGTAATGT-A  135

seq1  CAATGCTGTTATTAATTATATATTCTATTGTGTGCAGATTTTTCACACCT  200
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  CAATGCTGTTATTAATTATATA-TCTATTGTGTGCAGA-TTTTCACACCT  183

seq1  TACTAATCATATATCACTTTAGTCAGACAAACTAAGTAATTCCCATTTCT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACTAATCATATATCACTATAGTCAGACAAACTAAGTAATTCCCATTTCT  233

seq1  TCCTTGTCCCATCTGTGTTTTCCTAGTGACAGTGGCCTTGATCATCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCCATCTGTGTTTTCCTAGTGACAGTGGCCTTGATCATCTTTG  283

seq1  CATATGCTGATTGTCTGTGTATCTTCTTTGGGAAAAAATATCTTCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGATTGTCTGTGTATCTTCTTTGGGAAAAAATATCTTCTCAGA  333

seq1  ACTTTTGTTCATCTTTTTATTGCACTTGTTGTTGATGTCTGTCTGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTCATCTTTTTATTGCACTTGTTGTTGATGTCTGTCTGTCTGT  383

seq1  CTGTCTGGTTGGTTGCCTGGCTGGCTGGCTGGCTGGTTGCTTGGCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGTTGGTTGCCTGGCTGGCTGGCTGGCTGGTTGCTTGGCTGTCT  433

seq1  GGCTGTCTAGCTGTCTGTCTGTCTGTCTGATGGTTGGTTGGTTGGTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTAGCTGTCTGTCTGTCTGTCTGATGGTTGGTTGGTTGGTTCAT  483

seq1  TGGTTGGATGATTGGTTGGTTGGTTGGTTGGTTGCCTGGTTGGCTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGATGATTGGTTGGTTGGTTGGTTGGTTGCCTGGTTGGCTGGTTG  533

seq1  GCTGGCTGGCTGGTTAATTGGCTGACTGGTTGGCTGACTGGCTGATTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGGCTGGTTAATTGGCTGACTGGTTGGCTGACTGGCTGATTGGT  583

seq1  TGATTGGTTGGTTCTAACTCATTAGCAGGTATGTGATTTACACATATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTTGGTTCTAACTCATTAGCAGGTATGTGATTTACACATATTGT  633

seq1  TTCCTACTGTTTAAGCCATCTTCTCACTCAGTCAATTTTGGATGCACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGTTTAAGCCATCTTCTCACTCAGTCAATTTTGGATGCACAGC  683

seq1  AGCTGTTAGTTTTATGTTACTCAATTTGTTTCTACTTTGGTTGCTTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAGTTTTATGTTACTCAATTTGTTTCTACTTTGGTTGCTTATAT  733

seq1  TTTGGGGGTTATCCCCCCAAAAAAATGGAATCATGATTCAGAGAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTTATCCCCCCAAAAAAATGGAATCATGATTCAGAGAAAAATA  783

seq1  AAATTTCTCAAGCTTACTCTTTTGTGGCCATAACACCCTTAAACATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTCAAGCTTACTCTTTTGTGGCCATAACACCCTTAAACATTCTC  833

seq1  CAGTAGTTCAGGGGACTTTACTTGCTTTGAGACAAATCCTACCAGCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTCAGGGGACTTTACTTGCTTTGAGACAAATCCTACCAGCCCTT  883

seq1  GGGTGTTAACTGTGATACACTGTCAGCCCTTTGACATGGATAACACCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTAACTGTGATACACTGTCAGCCCTTTGACATGGATAACACCAAG  933

seq1  GTCAGTGAAATGGCATCTGCCATCTGTTTGCTATAACTTTATTTCTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAAATGGCATCTGCCATCTGTTTGCTATAACTTTATTTCTCATT  983

seq1  CAAATCTTGGTTTCCCATAATCAACTGCTGCCACACTGAACAACCTACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTGGTTTCCCATAATCAACTGCTGCCACACTGAACAACCTACAG  1033

seq1  GAAAACTTGAGGCCTCCATTATGTTGGAGCTGTGTAGGCACTGGAGCTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTGAGGCCTCCATTATGTTGGAGCTGTGTAGGCACTGGAGCTAT  1083

seq1  GGTGTAGTGTGAATTC  1116
      ||||||||||||||||
seq2  GGTGTAGTGTGAATTC  1099

seq1: chr13_57171033_57172136
seq2: B6Ng01-081B04.g_70_1165

seq1  GAATTCCAACTCAATTCTTCACAGAGCTAGAAATGGCAATTAGCAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCAATTCTTCACAGAGCTAGAAATGGCAATTAGCAAATTC  50

seq1  TTCTGGAATAACAAAAAACCTAGGATAGCGAAAACTATTCTCAACAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATAACAAAAAACCTAGGATAGCGAAAACTATTCTCAACAATAA  100

seq1  AAGAAGAGTTATAATGTTTAATAAAGCACAGAGTTAAAGAGAAAAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGTTATAATGTTTAATAAAGCACAGAGTTAAAGAGAAAAGAAGC  150

seq1  CAGTATTTTTTTCAAAACACATATTAAGCAAGGGAGTCTTTAGAATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTTTTTCAAAACACATATTAAGCAAGGGAGTCTTTAGAATCTTT  200

seq1  TAGAAGTTAGCCACAAGGATTCAGTATAGTTAGAGAGTTAGGAGGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTAGCCACAAGGATTCAGTATAGTTAGAGAGTTAGGAGGCCAGA  250

seq1  GGCCATCAGTCTTTAAAGCAATGTCCAAAACTGTGTCCCACTTCAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCAGTCTTTAAAGCAATGTCCAAAACTGTGTCCCACTTCAAGCCC  300

seq1  ATTCCAGGCCAGGCAGTCTCATGGCACTTTCCTAATGAAATTGTTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCCAGGCAGTCTCATGGCACTTTCCTAATGAAATTGTTTGTCC  350

seq1  ATAAGGTCATATATTAAATTAGGAGTGGTTTTGCAAATTGGAATAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCATATATTAAATTAGGAGTGGTTTTGCAAATTGGAATAATTTT  400

seq1  TTCACCTGATTTACTTAAGGTTATTTTTTGAAAAGTAGTTTATATTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGATTTACTTAAGGTTATTTTTTGAAAAGTAGTTTATATTGGGT  450

seq1  CAGGCGTAGTGGTACATTCCTATAGTCTCAGCATTCAGAAGTAGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGTAGTGGTACATTCCTATAGTCTCAGCATTCAGAAGTAGAGGCAG  500

seq1  GAGGATTGACCAGGCTATATAGTGGGTACTAGACCATCCAGAGCCACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGACCAGGCTATATAGTGGGTACTAGACCATCCAGAGCCACAAA  550

seq1  TGGAGACACTGTCACAGACAGGCAGGAGTTTATAGAGTGTTTCCGACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACACTGTCACAGACAGGCAGGAGTTTATAGAGTGTTTCCGACCCT  600

seq1  TCTCTGATAACACAAGGTAGGGTCACCTGGGAAGAGGGAAGCTCAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATAACACAAGGTAGGGTCACCTGGGAAGAGGGAAGCTCAATTGA  650

seq1  GAAATGTCTCCATCAGAATGGCCCTGTAGGAGAGTCTGTAGGGCATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCTCCATCAGAATGGCCCTGTAGGAGAGTCTGTAGGGCATTTTC  700

seq1  ATAATTGGTGACTGACGTGTGGACCTTGTGAGCAGAGAGCCATCCCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGTGACTGACGTGTGGACCTTGTGAGCAGAGAGCCATCCCTGTG  750

seq1  CAGGTGGTCTTGGGTTGTATAATAAATCAGGTTGAGTAGGCAACGGAGAG  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-GGTGGTCTTGGGTTGTATAATAAATCAGGTTGAGTAGGCAACGGAGAG  799

seq1  CAAGCAGCCCTTCTCTGTGACTCCTGCCTCTAACCCCGCTTCTGGGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCCCTTCTCTGTGACTCCTGCCTCTAACCCCGCTTCTGGGTCCT  849

seq1  GCTCTGGTATCCCCCCAGTGGTGAGCTGCGATGGGGGAACCCCAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTATCCCCCCAGTGGTGAGCTGCGATGGGGGAACCCCAAACAAA  899

seq1  CCCTTTCCTTTTCCATGATGCTTTTGGTCACAGCTTTTGTCACGACAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTTTTCCATGATGCTTTTGGTCACAGCTTTTGTCACGACAGGA  949

seq1  AGTAGAATGGGCCAGGTGCACAGCAAAGTGACTCAGCAAACTAGAGCGGG  1000
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTAG-ATGGGCCATGTGCACAGCAAAGTGACTCAGCAAACTAGAGCGGG  998

seq1  G-CTGGGTTTCGATGCCTTCATCAACTCTACAGACTGTGCCCTCCTCCTA  1049
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTTCGATGCC-TCATCAACTCTACAGACTGTGCCCTCCTCCTA  1047

seq1  GCCTTGAGTGGGCTGAATCAGACCTTGTTTGCCACAGTTGGCTAGCCCAC  1099
      ||  ||||| ||||| |||| |||||||||| | |||||||||||  |||
seq2  GC--TGAGT-GGCTGGATCA-ACCTTGTTTGGCCCAGTTGGCTAG--CAC  1091

seq1  CTAGG  1104
      |||||
seq2  CTAGG  1096