BAC Information

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BAC

Clone NameB6Ng01-081L03
Chromosome13 (Build37)
Map Location 37,175,899 - 37,337,909
singlet/doubletdoublet
Overlap genenone
Upstream geneLyrm4, Fars2, LOC100041590, LOC666758, Nrn1, F13a1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081L03.bB6Ng01-081L03.g
ACCDH896467DH896468
length5401,019
definitionDH896467|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L03, 5' end.DH896468|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,337,364 - 37,337,909)(37,175,899 - 37,176,906)
sequence
acgaaggctacatttgatgctaaaggagtgggcagtttcctggagcctag
ctgacctcagtggttcaggtttttgctttgttgggtaatctattgtgtca
caaaagagcacttttggctaatcagtcctctggatgtatcccagggcttg
gtgcatgtgtggtgagtgctctgcctctgtgctgcaccctagcccatgca
tgttaggtgatgcattaatttataagaagtcctctgagtgctctagtttc
ccctctcagccctgttcttcttgttttatgaatccaatatctaacctctt
tagatatattccttaactatttttaaactatctctcctagttctggcaat
agtctgttcccttgagacctggtcttgttcatttcctgctggtagttgtc
ctcaactgcctggtgacctggtttgtgcatctacattgatgaatggggaa
cgtttcataattttagctgtcctgtgtaggtttattttatatcaggacag
atggtggttgtttgtgtttgtttgtttgtttgtttgtttg
gaattctctgtaaagaacatgttagctgcatcccagcaattctggcctgt
agggttcttttcctcttgttttaactctactgaaagacagtctagacctc
atacatacccatttagtgctctgaaagccaagcaatgtaagaaatcagcc
taggtttatacaaacgaaagcacatatgcactattcaatatatgccaata
aaattcgtcaagagacattctgcaaacacaaagggttttagataaagata
taagtccaatgggatatagtaaatattacagatggcacatctgcaaatca
tacaatactttacgacagtattaagaaagtgctcagaggaaggaagggaa
cagagggaacatggctgataaaagagctcagaaactacttcattctctgc
ttcaaactgtaatctacctgcaaagatcaaagggggaggggaaagactag
agttggttcgggtaaataaagaagcaagttcttccagaaagacattccaa
gccaaaaaatattgtccagccattctgacactaaatactctaaatattgt
accacaaggatgcatgtagacactcactcgggacgcttaatatcagagta
actagttatgaggtgaggttcacatctgattggcatagccagtgtattga
agaaaatctttgcacacagagttctctaagttaattgtaaaggctaggcc
agtcagggccatagtcacaggtggtaagcagaggtaatactaaaagtgct
ttaaacaaaacactatattgatcttgttctactattttttccagcatctg
atatgacagtttctctctctctctctctctctctctctctctctctctct
ctttctgtgttcttctttttttaagaattttttttgtacacctatactct
tctgctcatggtttctccttccccagctcccccatacctcctcacatacc
caattctatgcatgcccccccttctccaacttgcaaacaaaaaacacaga
atccgaacagacttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37337364_37337909
seq2: B6Ng01-081L03.b_45_590 (reverse)

seq1  CAAACAAACAAACAAACAAACAAACACAAACAACCACCATCTGTCCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAACACAAACAACCACCATCTGTCCTGAT  50

seq1  ATAAAATAAACCTACACAGGACAGCTAAAATTATGAAACGTTCCCCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAACCTACACAGGACAGCTAAAATTATGAAACGTTCCCCATTC  100

seq1  ATCAATGTAGATGCACAAACCAGGTCACCAGGCAGTTGAGGACAACTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTAGATGCACAAACCAGGTCACCAGGCAGTTGAGGACAACTACC  150

seq1  AGCAGGAAATGAACAAGACCAGGTCTCAAGGGAACAGACTATTGCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAATGAACAAGACCAGGTCTCAAGGGAACAGACTATTGCCAGAA  200

seq1  CTAGGAGAGATAGTTTAAAAATAGTTAAGGAATATATCTAAAGAGGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAGATAGTTTAAAAATAGTTAAGGAATATATCTAAAGAGGTTAG  250

seq1  ATATTGGATTCATAAAACAAGAAGAACAGGGCTGAGAGGGGAAACTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGATTCATAAAACAAGAAGAACAGGGCTGAGAGGGGAAACTAGAG  300

seq1  CACTCAGAGGACTTCTTATAAATTAATGCATCACCTAACATGCATGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGGACTTCTTATAAATTAATGCATCACCTAACATGCATGGGCT  350

seq1  AGGGTGCAGCACAGAGGCAGAGCACTCACCACACATGCACCAAGCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCAGCACAGAGGCAGAGCACTCACCACACATGCACCAAGCCCTGG  400

seq1  GATACATCCAGAGGACTGATTAGCCAAAAGTGCTCTTTTGTGACACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATCCAGAGGACTGATTAGCCAAAAGTGCTCTTTTGTGACACAATA  450

seq1  GATTACCCAACAAAGCAAAAACCTGAACCACTGAGGTCAGCTAGGCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCCAACAAAGCAAAAACCTGAACCACTGAGGTCAGCTAGGCTCCA  500

seq1  GGAAACTGCCCACTCCTTTAGCATCAAATGTAGCCTTCGTGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGCCCACTCCTTTAGCATCAAATGTAGCCTTCGTGAATTC  546

seq1: chr13_37175899_37176906
seq2: B6Ng01-081L03.g_68_1071

seq1  GAATTCTCTGTAAAGAACATGTTAGCTGCATCCCAGCAATTCTGGCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAAAGAACATGTTAGCTGCATCCCAGCAATTCTGGCCTGT  50

seq1  AGGGTTCTTTTCCTCTTGTTTTAACTCTACTGAAAGACAGTCTAGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTTTTCCTCTTGTTTTAACTCTACTGAAAGACAGTCTAGACCTC  100

seq1  ATACATACCCATTTAGTGCTCTGAAAGCCAAGCAATGTAAGAAATCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACCCATTTAGTGCTCTGAAAGCCAAGCAATGTAAGAAATCAGCC  150

seq1  TAGGTTTATACAAACGAAAGCACATATGCACTATTCAATATATGCCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTATACAAACGAAAGCACATATGCACTATTCAATATATGCCAATA  200

seq1  AAATTCGTCAAGAGACATTCTGCAAACACAAAGGGTTTTAGATAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGTCAAGAGACATTCTGCAAACACAAAGGGTTTTAGATAAAGATA  250

seq1  TAAGTCCAATGGGATATAGTAAATATTACAGATGGCACATCTGCAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAATGGGATATAGTAAATATTACAGATGGCACATCTGCAAATCA  300

seq1  TACAATACTTTACGACAGTATTAAGAAAGTGCTCAGAGGAAGGAAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACTTTACGACAGTATTAAGAAAGTGCTCAGAGGAAGGAAGGGAA  350

seq1  CAGAGGGAACATGGCTGATAAAAGAGCTCAGAAACTACTTCATTCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAACATGGCTGATAAAAGAGCTCAGAAACTACTTCATTCTCTGC  400

seq1  TTCAAACTGTAATCTACCTGCAAAGATCAAAGGGGGAGGGGAAAGACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGTAATCTACCTGCAAAGATCAAAGGGGGAGGGGAAAGACTAG  450

seq1  AGTTGGTTCGGGTAAATAAAGAAGCAAGTTCTTCCAGAAAGACATTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTCGGGTAAATAAAGAAGCAAGTTCTTCCAGAAAGACATTCCAA  500

seq1  GCCAAAAAATATTGTCCAGCCATTCTGACACTAAATACTCTAAATATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAATATTGTCCAGCCATTCTGACACTAAATACTCTAAATATTGT  550

seq1  ACCACAAGGATGCATGTAGACACTCACTCGGGACGCTTAATATCAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGGATGCATGTAGACACTCACTCGGGACGCTTAATATCAGAGTA  600

seq1  ACTAGTTATGAGGTGAGGTTCACATCTGATTGGCATAGCCAGTGTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTATGAGGTGAGGTTCACATCTGATTGGCATAGCCAGTGTATTGA  650

seq1  AGAAAATCTTTGCACACAGAGTTCTCTAAGTTAATTGTAAAGGCTAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTTTGCACACAGAGTTCTCTAAGTTAATTGTAAAGGCTAGGCC  700

seq1  AGTCAGGGCCATAGTCACAGGTGGTAAGCAGAGGTAATACTAAAAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGCCATAGTCACAGGTGGTAAGCAGAGGTAATACTAAAAGTGCT  750

seq1  TTAAACAAAACACTATATTGATCTTGTTCTACTATTTTTTCCAGCATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAAACACTATATTGATCTTGTTCTACTATTTTTTCCAGCATCTG  800

seq1  ATATGACAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  850

seq1  CTTTCTTTCTTTCTTTCTTTTTTTTTAGAATTTTTTTTGTACA-CTATAC  899
      |||||| |  |||||   ||||||| ||||||||||||||||| ||||||
seq2  CTTTCTGT-GTTCTT--CTTTTTTTAAGAATTTTTTTTGTACACCTATAC  897

seq1  TCTTCTGCTCATGGTTTCTCCTTCCCCAGCTCCCCCATACCTCCTCACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTCATGGTTTCTCCTTCCCCAGCTCCCCCATACCTCCTCACAT  947

seq1  ACCCAATTCTATGCATGCCCCCCC-TCTCCAAACATGCAAACAAAACAAA  998
      |||||||||||||||||||||||| ||||| ||| ||||||||||  |||
seq2  ACCCAATTCTATGCATGCCCCCCCTTCTCC-AACTTGCAAACAAA--AAA  994

seq1  CACAAAATCC  1008
      |||| |||||
seq2  CACAGAATCC  1004