BAC Information

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BAC

Clone NameB6Ng01-083C10
Chromosome13 (Build37)
Map Location 4,775,399 - 4,776,398
singlet/doubletsinglet
Overlap geneEG432723
Upstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083C10.bB6Ng01-083C10.g
ACCDH897496DH897497
length9591,242
definitionDH897496|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C10, 5' end.DH897497|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgttgggtgacattgtctctcccttatactttgaggcaaagt
ccttaacagaccctatcttactgtttgactagtggaaggcaagtcacagt
ccttcctgactgagattacaggcacacagctgacgctttatgtgggttgt
caggaaccatattcagctcatttccctgcacaataagcatgtaatccact
gagccattttcccagcccttatatgcctttaaagttatattttatctatc
tatctatctgtctgtctatctatctgtctgtctgtctgtctatctatcta
tctatctgtctgtctgtctgtctgtctgtctacctatctatctatcatct
gcgtattatttattatataaatattatttgtttatattttattacatata
tatatatatatatacatatatatatatatataaacgtgtgtgtttgtgtg
tgtgtgtgtgtaatcatgtatgtaggcacatgtgcactgcagaagttgtt
tcttctcttccatggcacgggtcccagggatggagctgaagtcaggcatg
cagacagatgtctctacctactgagtcagcttgacagctttctaatagaa
ttttctaaaccaaaagaaaatgtatccatttctgattgtgttattaagaa
tgaagccaaaaaaaaatgaagccatgtttttattctgattatattacact
aataagaccaacatgaaaaatgtatatcttaattctatgttccaaggatc
ctttgcttttcagctgagcctcagatgttctaagatgagctcacatgttg
tatttcaaatcagttcctcagaagttcgtgcacaaaggcaggatcattgg
ttctacagaatggacagaggcagcgtgtctgctcacatggtcatagctgc
agtgtcttcttctgaatgagtaggcgatgttgacttagcatgtactatca
gagattttt
gaattcaaccaaatagaaacaaaaagaactataaaagtatcaaccaactt
aagagctggttctccaagaaaatccacaaaatagattaacccttagctag
actaacaagagggcagaagcacagtatccttattaacaaaatcagaaatg
aaaagggagacataacagtagaatctgaggatatccaaataatcatcaga
ttctgcctcaaaaatctatactcaacaaaactggaatacctggatgaaat
aaacaattttctagagaaatactatgtgccaaagttaaatcaggatcaga
ttaatgatctaaacaatcccaaattccctaaagaaatagaagtggtcatt
aatagtctcccaactaaaaaatcccaggacctaatggatttactgcatag
ttctatcagaccttcaaagaagacttaattccaatattcctcaaactgtt
ccacaaaatagaaagagtaggtactctacccaattcgttctataaatcca
caattactctgatacctaaaccacacaaagatccaacaaagaaagagaag
ttcagaccaatttcccttatggatatcgatgcaaaaatacttggtaaaat
tctcacaaaatgaatctaagaacacatcaaaacaatcatccatcataatt
aaataggcttcataataggaatgcaaggatggttcaacatatggaaatcc
atcaatgtaattcactatgtaaacaaactcaaaaaaaaattacatgacca
tagcattagaagctaagaaagcatttgacaaaatccaacacccattcatg
ataaaagtcttggaatggtcagaaattcatggccaataccaaaaaataat
aaaagcaatatacagcaaaccagtagccaacagcaaatttaatagagaga
aacttgaagcaatcccaataaaattagggaatagacaaggctgcctactc
tctcatacccattcatacagttctatagtacttgaagtcctagatagagc
atagacacaaaaagagatcataaggatacaaattggaaaggaagatttct
taatatcagcatttgcagattaatgatagtatacataagtaccccaaaat
tccacaggagaaatcttaactgataacacttcagtgaattggggatacaa
ataacttgacatcatggctcacttaacaagataacgctagagaatagaac
acacccctcacgtattccatattataatacttgggtgtagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4775399_4776398
seq2: B6Ng01-083C10.b_46_1004

seq1  GAATTCCATGTTGGGTGACATTGTCTCTCCCTTATACTTTGAGGCAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTGGGTGACATTGTCTCTCCCTTATACTTTGAGGCAAAGT  50

seq1  CCTTAACAGACCCTATCTTACTGTTTGACTAGTGGAAGGCAAGTCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACAGACCCTATCTTACTGTTTGACTAGTGGAAGGCAAGTCACAGT  100

seq1  CCTTCCTGACTGAGATTACAGGCACACAGCTGACGCTTTATGTGGGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGACTGAGATTACAGGCACACAGCTGACGCTTTATGTGGGTTGT  150

seq1  CAGGAACCATATTCAGCTCATTTCCCTGCACAATAAGCATGTAATCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCATATTCAGCTCATTTCCCTGCACAATAAGCATGTAATCCACT  200

seq1  GAGCCATTTTCCCAGCCCTTATATGCCTTTAAAGTTATATTTTATCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTTTCCCAGCCCTTATATGCCTTTAAAGTTATATTTTATCTATC  250

seq1  TATCTATCTGTCTGTCTATCTATCTGTCTGTCTGTCTGTCTATCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTGTCTGTCTATCTATCTGTCTGTCTGTCTGTCTATCTATCTA  300

seq1  TCTATCTGTCTGTCTGTCTGTCTGTCTGTCTACCTATCTATCTATCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTCTGTCTGTCTGTCTGTCTGTCTACCTATCTATCTATCATCT  350

seq1  GCGTATTATTTATTATATAAATATTATTTGTTTATATTTTATTACATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATTATTTATTATATAAATATTATTTGTTTATATTTTATTACATATA  400

seq1  TATATATATATATACATATATATATATATATAAACGTGTGTGTTTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATACATATATATATATATATAAACGTGTGTGTTTGTGTG  450

seq1  TGTGTGTGTGTAATCATGTATGTAGGCACATGTGCACTGCAGAAGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTAATCATGTATGTAGGCACATGTGCACTGCAGAAGTTGTT  500

seq1  TCTTCTCTTCCATGGCACGGGTCCCAGGGATGGAGCTGAAGTCAGGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCCATGGCACGGGTCCCAGGGATGGAGCTGAAGTCAGGCATG  550

seq1  CAGACAGATGTCTCTACCTACTGAGTCAGCTTGACAGCTTTCTAATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATGTCTCTACCTACTGAGTCAGCTTGACAGCTTTCTAATAGAA  600

seq1  TTTTCTAAACCCAAAAGAAAATGTATCCATTTCTGATTGTGTTATTAAGA  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAA-CCAAAAGAAAATGTATCCATTTCTGATTGTGTTATTAAGA  649

seq1  ATGAAGCCAAAAAAAAATGAAGCCCATGTTTTTATTCTGATTATATTACA  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGAAGCCAAAAAAAAATGAAG-CCATGTTTTTATTCTGATTATATTACA  698

seq1  CTAATAAGACCAACATGAAAAATGTATATCTTAATTCTATGTTTCCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAATAAGACCAACATGAAAAATGTATATCTTAATTCTATG-TTCCAAGG  747

seq1  ATCCTTTGCTTTTCAGCTGAGCCTCAGATGTTCTAAGGATGAGGCTCACA  800
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  ATCCTTTGCTTTTCAGCTGAGCCTCAGATGTTCTAA-GATGA-GCTCACA  795

seq1  TGTTTGTAATTTCAAAATCAGTTCCCTCAGAAGTTTCGTGCAACAAAAGG  850
      || |||| ||||| ||||||||| ||||||||| ||||||| |||||  |
seq2  TG-TTGT-ATTTC-AAATCAGTT-CCTCAGAAG-TTCGTGC-ACAAA--G  837

seq1  CCAGGAATCATTGGTTCCTTACAGAAAATGGACAGAAGGGGGCAGCGGTG  900
       |||| |||||||||||  |||||  ||||||||||    |||||| |||
seq2  GCAGG-ATCATTGGTTC--TACAG--AATGGACAGA----GGCAGC-GTG  877

seq1  TCTGCTCAACATTGGTCATAGCTGCAGTGTTCCTTTCTTCTCTGAAATGG  950
      ||||||| ||| ||||||||||||||||||    |||||||    |||| 
seq2  TCTGCTC-ACA-TGGTCATAGCTGCAGTGT---CTTCTTCT---GAATG-  918

seq1  AGGTAGGCGATTGTGTGAACTTAGCCATGTACTATTCAAAGAAGATTTTT  1000
        ||||||||   |||  |||||| ||||||||| |||    ||||||||
seq2  -AGTAGGCGA---TGTTGACTTAG-CATGTACTA-TCA---GAGATTTTT  959