BAC Information

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BAC

Clone NameB6Ng01-083J08
Chromosome13 (Build37)
Map Location 27,334,831 - 27,335,996
singlet/doubletsinglet
Overlap genePrl3b1
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1
Downstream genePrl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083J08.bB6Ng01-083J08.g
ACCDH897806DH897807
length1,2651,144
definitionDH897806|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J08, 5' end.DH897807|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagtctgcttagcaaattgaagaggactgtttctttaagattcc
tttaagatgtcctagattctctaaaacatccatgcatgaaagcaatatta
gttaacctgctggttttacatgatgtgctgtaacttttaggcatttattt
catttaaaaaaataaatttattagatattttcttcatttatatttcaaat
gctatcccaaaagcccactataccctccccatgccctgctaccctaccca
ttcaatcccacttcttggccctggcatccccctgtactggggcatgtaaa
gtaagcaagagaggggcctctcttcccagcgatggttgattaggcaatct
tctgctacatatgcagctagagacatgagctctgggggtactgattagtt
catattattgttccacctatagggatgcagacatcttcagctcttgggta
ctttctctactattggggactctgtgttccatccacaatagatgactgtg
agcatctacttctctatttgccagacactggcatagcctcacaagagaca
gctatatcagggttctttcagcaaaatcttgctggcatatgcaatagtgt
ctgcgtttggtggctgattatgggatggacccccaggtggggcagtctct
ggtccatcctttcatcttagctccaaactttgtctctgtaactccttcca
tgggtattttgttccctgttctaaggagaaatgaagaatccacgtgttgg
tcttccttcttcttgattttcttgtgttgtgcaaattgtatctttgctat
tctaggattctgggctgatatccacttatcagtgagtgcatatcaagtga
cttcttttttgaccaagttacttcactcaggatgatatccttctgataca
tccatttgcccaagaatttcataaattcattgttttaatagctgagtagt
actccattgtgtaaatgtatcacattttctgtatccattcctctgttgat
ggacatctggattctttcatatatatataaaaagctgctatgaacatagt
gaccatatgcccttataccagatggaacatcatctgtgtatattgctctt
gagaagtattgctggatctttctggtagtattatgttcaattttctgaga
accactagactgattcgaaagtgtgtcaagccttgcatcccctcatggag
agttccttgcttccaatctgcagcatcttgctgtcacctggaatttgtat
acctactacatctcc
gaattcaatagtttatttgtgttagtcacagaaagaagcagtaacattat
ctggtgtgaaggcttagatcattccctgctcaaataattctacttgagga
agaattgttgtctagaaccttaggtagacaatgacagtagctttgtgatt
accaatttagtaagtgcaataaatggcaaaaagaaaagacctaatatgct
gggtgtggtggtgcacgcctttaatcccagcacttgggaggcagaggcag
gcagatttctgagttcaaggccagcctggtctacaaagtgagttccaggg
cagccggggctttacaaagaaaccctgtctcaaacaaacaaacaaacaaa
caaacaaacaaacaaacaagaaaaaaagaaaagacctaatttagcgagtc
acttaatgtttcaaatgacatttgcaagaaatatcaaattcatgaactaa
ttaaaatttatttaatgaagtgatgaaagaacctaaattcccaattcttt
aaagtatacagagagtggcttgaggattctatctcaggattaatctcagc
taaaaatgtttacaaacttgagaagttgtgctaagacgaacccaagctga
ggaaatcctccaagctctttgtgtatagggagtaatcttcctccacacct
atggtttctcattgagtaaagggatttcagattgcatctgtacagaagca
agcatagaaaacttcggacagacagtatagcctctacagtgtcatttgaa
tacatgatttcagcatcatttctctttatagctggggcactcctgttgct
ggcagtgtcaaacctacttgtctgggagaagtgacttccttaccaaatta
tcgattacccactgaaagcctataccaacgtgtgattgtggtgtcacaca
acgcccatgatcttgcttcaaagccttcatggaatttgtaagtatttctg
gtatctatctgtctgtctgtctgtctgtctgtctgctatctatcatctat
ctatgtatctatttatgtatctatgtctctgagtatcatgtattattatc
atcatcatctactattacataatattattctcctcatagtactcattcat
ctcacttacttctcatacccaccacatcaccctctttttctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27334831_27335996
seq2: B6Ng01-083J08.g_67_1210

seq1  GAATTCAATAGTTTATTTGTGTTAGTCACAGAAAGAAGCAGTAACATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTTTATTTGTGTTAGTCACAGAAAGAAGCAGTAACATTAT  50

seq1  CTGGTGTGAAGGCTTAGATCATTCCCTGCTCAAATAATTCTACTTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGAAGGCTTAGATCATTCCCTGCTCAAATAATTCTACTTGAGGA  100

seq1  AGAATTGTTGTCTAGAACCTTAGGTAGACAATGACAGTAGCTTTGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTTGTCTAGAACCTTAGGTAGACAATGACAGTAGCTTTGTGATT  150

seq1  ACCAATTTAGTAAGTGCAATAAATGGCAAAAAGAAAAGACCTAATATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTAGTAAGTGCAATAAATGGCAAAAAGAAAAGACCTAATATGCT  200

seq1  GGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  250

seq1  GCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGG  300

seq1  CAGCCGGGGCTTTACAAAGAAACCCTGTCTCAAACAAACAAACAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGGCTTTACAAAGAAACCCTGTCTCAAACAAACAAACAAACAAA  350

seq1  CAAACAAACAAACAAACAAGAAAAAAAGAAAAGACCTAATTTAGCGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAGAAAAAAAGAAAAGACCTAATTTAGCGAGTC  400

seq1  ACTTAATGTTTCAAATGACATTTGCAAGAAATATCAAATTCATGAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTTTCAAATGACATTTGCAAGAAATATCAAATTCATGAACTAA  450

seq1  TTAAAATTTATTTAATGAAGTGATGAAAGAACCTAAATTCCCAATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTATTTAATGAAGTGATGAAAGAACCTAAATTCCCAATTCTTT  500

seq1  AAAGTATACAGAGAGTGGCTTGAGGATTCTATCTCAGGATTAATCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATACAGAGAGTGGCTTGAGGATTCTATCTCAGGATTAATCTCAGC  550

seq1  TAAAAATGTTTACAAACTTGAGAAGTTGTGCTAAGACGAACCCAAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTTTACAAACTTGAGAAGTTGTGCTAAGACGAACCCAAGCTGA  600

seq1  GGAAATCCTCCAAGCTCTTTGTGTATAGGGAGTAATCTTCCTCCACACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCTCCAAGCTCTTTGTGTATAGGGAGTAATCTTCCTCCACACCT  650

seq1  ATGGTTTCTCATTGAGTAAAGGGATTTCAGATTGCATCTGTACAGAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTCATTGAGTAAAGGGATTTCAGATTGCATCTGTACAGAAGCA  700

seq1  AGCATAGAAAACTTCGGACAGACAGTATAGCCTCTACAGTGTCATTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAAAACTTCGGACAGACAGTATAGCCTCTACAGTGTCATTTGAA  750

seq1  TACATGATTTCAGCATCATTTCTCTTTATAGCTGGGGCACTCCTGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATTTCAGCATCATTTCTCTTTATAGCTGGGGCACTCCTGTTGCT  800

seq1  GGCAGTGTCAAACCTACTTGTCTGGGAGAAGGTGACTTCCTTACCAAATT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCAGTGTCAAACCTACTTGTCTGGGAGAA-GTGACTTCCTTACCAAATT  849

seq1  ATCGATTACCCACTGAAAGCCTATACCAACGTGTGATTGTGGTGTCACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATTACCCACTGAAAGCCTATACCAACGTGTGATTGTGGTGTCACAC  899

seq1  AACGCCCATGATCTTGCTTCAAAAGCCTTCATGGAATTTGTAAGTATTTC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACGCCCATGATCTTGCTTC-AAAGCCTTCATGGAATTTGTAAGTATTTC  948

seq1  TGGTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCATC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTG-CTATCTATCATC  997

seq1  TATCTATGTATCTATTTATGTATCTATGTCTCTGTGTATCTATGTATTAT  1050
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TATCTATGTATCTATTTATGTATCTATGTCTCTGAGTATC-ATGTATTAT  1046

seq1  CTATCTATCATCCATCTACCTATTTACATTATTATTATTTCTCTCATAGT  1100
       |||| ||||| |||||| ||| ||||| || |||||||   ||||||||
seq2  -TATC-ATCAT-CATCTA-CTA-TTACA-TAATATTATTCTCCTCATAGT  1090

seq1  TACCTCATCTATCCTCCACCTCTCACCTCCTCCATCA-CCCCACCACCAT  1149
         |||||          | |||||| | || | |||  ||||||| |||
seq2  --ACTCAT---------TCATCTCACTTACTTC-TCATACCCACCA-CAT  1127

seq1  CACCCTCTTTTCCTTTC  1166
      ||||||||||| |||||
seq2  CACCCTCTTTTTCTTTC  1144