BAC Information

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BAC

Clone NameB6Ng01-085A08
Chromosome13 (Build37)
Map Location 57,371,835 - 57,540,053
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneCxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A08.bB6Ng01-085A08.g
ACCDH898808DH898809
length1,1481,089
definitionDH898808|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A08, 5' end.DH898809|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,371,835 - 57,372,984)(57,538,947 - 57,540,053)
sequence
gaattctcttccagcttctaccattcgaaacctgctcgctggtttagttt
agttttgagttgtgttctttgtagagtgtggtcactttgttacatagtat
ggaactgtcaatcacttggggcttggatttcacagttctggagtcctgaa
cacagggaggggcttctctcctgtgatctcattggatgggggagatcagg
tttcagggcctcccaagaaagaggggtcctagcaaataaccctgaatttg
caactgccccctcctcccccacccagtcccatacagcttcatactgttag
gtcagccctcaccaaggatgaaacgaagccagctcctagctgcactggtg
ctgatatgactcttgaccatctgccttccagaaggatctgcagatcccct
ctggggggaagataatgtccccagagcttcaaacaaacttcaaaatttta
agaacgtgagcctcatagtcaacaaaattgtacaatcacgacaatatctc
cccagccactgtagacagcaggggtagaccttgggggatccaaatggaca
gcacctgccctaccaggagcacagggacattgcatgttaatagtatttaa
gtatttatttagcatatctagcaatatcaagacttcaagtaaatatatat
tgtgagtacataaaaatttcaaagtacaaaacaaaagtgaaataaaccct
gaagtttatggtgaactaaaccagattttatttaactttggaagagtaag
agacaaagtgtttcctaaagcagcaaagagattgtgttaaatgataaata
ctatgtcaggaaatttaaatgtatacaaataagttcatgcatatttatga
aaattatattcaaaagttactttagtacacttactatggtcggtggatac
attaaatttaattagaaataaacaataaaagattaatagggaaattttaa
tgtatgtagaaattcaacaatagttctataaactcatagagaaagggatc
ataataaaacataaccaggtgataaaaaaatactatttaaagcttttgaa
atgaagctggtggtttctttgagggatattgtatcattctgagtggggat
ttagataaaaaaaagaggcttaaaactaaatatttagctaatacaagc
gaattctcagttttgttcctactgtggttccccttggcactaccacaagg
cacctgctttctcttctcttcacaaaactctccattttcagctgtcctgg
ttgtcttgatgttttcaggtataaactgtatcatgtgcaaacggagataa
ctttcccttaaatgttaaaatataattgtgctgtttctccttcgctttat
aacagcaatcgtttagtctaaaatgctggtgacacagagcctgacccact
gttgagggtgaaatgccagaatgagtttactcacggctattctgagggac
tgagctctccactaccccccagggctagctcaggacaggctcttctttct
ggggtgtgtcttggaatgatgaggcatccccaattagttcagagaaaggt
tatttctcattctgtacctttctctcacatccatttcgtctccatggtgt
tacttcacattgttggatctgctgctttgtttcataaaaaagcttcaaga
tgatggaacatcatacttagaattgtaggttagttaaggacattcgagtc
tcagttggctatgcttaggggaggctgtagagcctttgcaagtcagaccc
ttttgcctctcactgtttgctgtgtagagtcaacaacatcttttgctctc
aagggccccagtggactctagcctcccataactgtaagtaaaacccgttt
tttcttgcagttgccttggtgaaacaccatggccagaagcaacagaaaac
aatgcatgattcttttttctgcgttttcgaggactttgatttcctagaag
ccaccgagcccttctctgctttgtgccacatcctagagatgtgttatact
tttttgaacactagaattagattcttctaatctccgggaaactttctttt
tggcgttatctggagaactttctatctggtaatctttctctcagccgtaa
ccaagtgggtctatgagatccgggctgtggggtgacttcctctctatatg
ttccctctgtacagcaactctggaactccccatctttcctgacccgtgtc
ctctatggtcgcttttatagaatcctgacttctccagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57371835_57372984
seq2: B6Ng01-085A08.b_44_1191

seq1  GAATTCTCTTCCAGCTTCTACCATTCGAAACCTGCTCGCTGGTTTAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGCTTCTACCATTCGAAACCTGCTCGCTGGTTTAGTTT  50

seq1  AGTTTTGAGTTGTGTTCTTTGTAGAGTGTGGTCACTTTGTTACATAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGTTGTGTTCTTTGTAGAGTGTGGTCACTTTGTTACATAGTAT  100

seq1  GGAACTGTCAATCACTTGGGGCTTGGATTTCACAGTTCTGGAGTCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTCAATCACTTGGGGCTTGGATTTCACAGTTCTGGAGTCCTGAA  150

seq1  CACAGGGAGGGGCTTCTCTCCTGTGATCTCATTGGATGGGGGAGATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGGGGCTTCTCTCCTGTGATCTCATTGGATGGGGGAGATCAGG  200

seq1  TTTCAGGGCCTCCCAAGAAAGAGGGGTCCTAGCAAATAACCCTGAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGCCTCCCAAGAAAGAGGGGTCCTAGCAAATAACCCTGAATTTG  250

seq1  CAACTGCCCCCTCCTCCCCCACCCAGTCCCATACAGCTTCATACTGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCCCCTCCTCCCCCACCCAGTCCCATACAGCTTCATACTGTTAG  300

seq1  GTCAGCCCTCACCAAGGATGAAACGAAGCCAGCTCCTAGCTGCACTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCCTCACCAAGGATGAAACGAAGCCAGCTCCTAGCTGCACTGGTG  350

seq1  CTGATATGACTCTTGACCATCTGCCTTCCAGAAGGATCTGCAGATCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGACTCTTGACCATCTGCCTTCCAGAAGGATCTGCAGATCCCCT  400

seq1  CTGGGGGGAAGATAATGTCCCCAGAGCTTCAAACAAACTTCAAAATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGGAAGATAATGTCCCCAGAGCTTCAAACAAACTTCAAAATTTTA  450

seq1  AGAACGTGAGCCTCATAGTCAACAAAATTGTACAATCACGACAATATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTGAGCCTCATAGTCAACAAAATTGTACAATCACGACAATATCTC  500

seq1  CCCAGCCACTGTAGACAGCAGGGGTAGACCTTGGGGGATCCAAATGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCACTGTAGACAGCAGGGGTAGACCTTGGGGGATCCAAATGGACA  550

seq1  GCACCTGCCCTACCAGGAGCACAGGGACATTGCATGTTAATAGTATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGCCCTACCAGGAGCACAGGGACATTGCATGTTAATAGTATTTAA  600

seq1  GTATTTATTTAGCATATCTAGCAATATCAAGACTTCAAGTAAATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTAGCATATCTAGCAATATCAAGACTTCAAGTAAATATATAT  650

seq1  TGTGAGTACATAAAAATTTCAAAGTACAAAACAAAAGTGAAATAAACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTACATAAAAATTTCAAAGTACAAAACAAAAGTGAAATAAACCCT  700

seq1  GAAGTTTATGGTGAACTAAACCAGAATTTTATTTAACTTTGGAAGAGTAA  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAGTTTATGGTGAACTAAACCAG-ATTTTATTTAACTTTGGAAGAGTAA  749

seq1  GAGACAAAGTGTTTCCT-AAGCAGCAAAGAGATTGTGTTAAATGAT-AAT  798
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  GAGACAAAGTGTTTCCTAAAGCAGCAAAGAGATTGTGTTAAATGATAAAT  799

seq1  ACTATGTCAGGAAATTTAAATGTATACAAATAAGTTCATGCATATTTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCAGGAAATTTAAATGTATACAAATAAGTTCATGCATATTTATG  849

seq1  AAAATTTATATTCAAAAGTTACTTTAGTACACTTACTATGGTC-GTTGAT  897
      |||| |||||||||||||||||||||||||||||||||||||| || |||
seq2  AAAA-TTATATTCAAAAGTTACTTTAGTACACTTACTATGGTCGGTGGAT  898

seq1  ACATTAAATTAAATTAGAAATAAACAATAAAAAGATTAATA-GGAAATTT  946
      |||||||||| ||||||||||||||||| |||||||||||| ||||||||
seq2  ACATTAAATTTAATTAGAAATAAACAAT-AAAAGATTAATAGGGAAATTT  947

seq1  TAATGTATGTAGAAATTCAACAATAG-TCTAAAAACTCATTAGAGAAAGG  995
      |||||||||||||||||||||||||| |||| ||||||| ||||||||||
seq2  TAATGTATGTAGAAATTCAACAATAGTTCTATAAACTCA-TAGAGAAAGG  996

seq1  AATCATAAATAAAAACATAAACAAGTGAT-AAAAAATACTATATTAAAGC  1044
       |||||||   ||||||||| || ||||| |||||||||||| |||||||
seq2  GATCATAA--TAAAACATAACCAGGTGATAAAAAAATACTAT-TTAAAGC  1043

seq1  TTTTGAAATGTAGCTGGTGGTTTCTTTAGAGGTATA-TGTATCATTCTGA  1093
      |||||||||| |||||||||||||||| |||| ||| |||||||||||||
seq2  TTTTGAAATGAAGCTGGTGGTTTCTTT-GAGGGATATTGTATCATTCTGA  1092

seq1  GTGAGTATTTTAGTAAAAAAAAGGAGGCTAAAATTTAATAATTTAGCTAT  1143
      ||| | | |||||  ||||||| |||||| |||  |||  ||||||||| 
seq2  GTGGGGA-TTTAGATAAAAAAAAGAGGCTTAAAACTAAATATTTAGCTAA  1141

seq1  TACAAGC  1150
      |||||||
seq2  TACAAGC  1148

seq1: chr13_57538947_57540053
seq2: B6Ng01-085A08.g_70_1158 (reverse)

seq1  CTCT-GAGAAGTCGAGGATTCTAATAAAAAAGCGGACCATAGGAGGACAG  49
      |||| |||||||| |||||||   || |||||| ||||||| ||||||| 
seq2  CTCTGGAGAAGTC-AGGATTC---TATAAAAGC-GACCATA-GAGGACAC  44

seq1  GGGTCAGGGAATGATGGGGAGGCTCAAGAGTGGCTGTGACAGAGAGAAAC  99
      |||||| |||| |||||||| | || ||||| ||||| |||||| | |||
seq2  GGGTCA-GGAAAGATGGGGA-GTTCCAGAGTTGCTGT-ACAGAG-GGAAC  90

seq1  AATTATAGAGAGGAAAGTCACCTCCACAGCCACGGATCTCATAGGACACA  149
      |  |||||||||| |||||||| |||||||| ||||||||||| ||| | 
seq2  A--TATAGAGAGG-AAGTCACC-CCACAGCC-CGGATCTCATA-GAC-CC  133

seq1  ACTATGTTACGGCTGAGAGAAAGACTAACCAGATAGAAAAGTTCTCAAGA  199
      |||  ||||||||||||||||||| | ||||||||| ||||||||| |||
seq2  ACTTGGTTACGGCTGAGAGAAAGA-TTACCAGATAG-AAAGTTCTCCAGA  181

seq1  TAAACGCCAAAAAAGAAAAGTTTCCCGAAGATTAGAAAGAATCTAATTCT  249
      | |||||||||||   ||||||||||| ||||||| ||||||||||||||
seq2  T-AACGCCAAAAA--GAAAGTTTCCCGGAGATTAG-AAGAATCTAATTCT  227

seq1  AGTGTTCAAAAAAGTATAACACATCTCTAGGATGTGGCAC-AAGCAGAGA  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTGTTCAAAAAAGTATAACACATCTCTAGGATGTGGCACAAAGCAGAGA  277

seq1  AGGGCTCGGTGGCTTCTAGGAAATCAAGGTCCTCG-AAACGCAG-AAAAA  346
      ||||||||||||||||||||||||||| ||||||| |||||||| |||||
seq2  AGGGCTCGGTGGCTTCTAGGAAATCAAAGTCCTCGAAAACGCAGAAAAAA  327

seq1  GAATCCTGCATTGTTTTCTGTTGCTTCTGGCCATGGTGTTTCACCAAGGC  396
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGCATTGTTTTCTGTTGCTTCTGGCCATGGTGTTTCACCAAGGC  377

seq1  AACTGCAAG-AAAAACGGGTTTTACTTACAGTTATGGGAGGCTAGAGTCC  445
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAGAAAAAACGGGTTTTACTTACAGTTATGGGAGGCTAGAGTCC  427

seq1  ACTGGGGCCCTTGAGAGCAAAAGATGTTGTTGACTCTACACAGCAAACAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCCCTTGAGAGCAAAAGATGTTGTTGACTCTACACAGCAAACAG  477

seq1  TGAGAGGCAAAAGGGTCTGACTTGCAAAGGCTCTACAGCCTCCCCTAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCAAAAGGGTCTGACTTGCAAAGGCTCTACAGCCTCCCCTAAGC  527

seq1  ATAGCCAACTGAGACTCGAATGTCCTTAACTAACCTACAATTCTAAGTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAACTGAGACTCGAATGTCCTTAACTAACCTACAATTCTAAGTAT  577

seq1  GATGTTCCATCATCTTGAAGCTTTTTTATGAAACAAAGCAGCAGATCCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCATCATCTTGAAGCTTTTTTATGAAACAAAGCAGCAGATCCAA  627

seq1  CAATGTGAAGTAACACCATGGAGACGAAATGGATGTGAGAGAAAGGTACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAAGTAACACCATGGAGACGAAATGGATGTGAGAGAAAGGTACA  677

seq1  GAATGAGAAATAACCTTTCTCTGAACTAATTGGGGATGCCTCATCATTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAAATAACCTTTCTCTGAACTAATTGGGGATGCCTCATCATTCC  727

seq1  AAGACACACCCCAGAAAGAAGAGCCTGTCCTGAGCTAGCCCTGGGGGGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACCCCAGAAAGAAGAGCCTGTCCTGAGCTAGCCCTGGGGGGTA  777

seq1  GTGGAGAGCTCAGTCCCTCAGAATAGCCGTGAGTAAACTCATTCTGGCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGCTCAGTCCCTCAGAATAGCCGTGAGTAAACTCATTCTGGCAT  827

seq1  TTCACCCTCAACAGTGGGTCAGGCTCTGTGTCACCAGCATTTTAGACTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTCAACAGTGGGTCAGGCTCTGTGTCACCAGCATTTTAGACTAA  877

seq1  ACGATTGCTGTTATAAAGCGAAGGAGAAACAGCACAATTATATTTTAACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTGCTGTTATAAAGCGAAGGAGAAACAGCACAATTATATTTTAACA  927

seq1  TTTAAGGGAAAGTTATCTCCGTTTGCACATGATACAGTTTATACCTGAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGAAAGTTATCTCCGTTTGCACATGATACAGTTTATACCTGAAA  977

seq1  ACATCAAGACAACCAGGACAGCTGAAAATGGAGAGTTTTGTGAAGAGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGACAACCAGGACAGCTGAAAATGGAGAGTTTTGTGAAGAGAAG  1027

seq1  AGAAAGCAGGTGCCTTGTGGTAGTGCCAAGGGGAACCACAGTAGGAACAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGGTGCCTTGTGGTAGTGCCAAGGGGAACCACAGTAGGAACAA  1077

seq1  AACTGAGAATTC  1107
      ||||||||||||
seq2  AACTGAGAATTC  1089