BAC Information

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BAC

Clone NameB6Ng01-085A18
Chromosome13 (Build37)
Map Location 55,584,738 - 55,697,695
singlet/doubletdoublet
Overlap geneDbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9
Upstream geneLOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7
Downstream geneB4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A18.bB6Ng01-085A18.g
ACCDH898826DH898827
length1,071698
definitionDH898826|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A18, 5' end.DH898827|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,584,738 - 55,585,806)(55,697,003 - 55,697,695)
sequence
gaattcttacctcctgacgctgcaagcttgaggtcatctgagccatcctc
gtatgtgtacagagccctgaggagagggaggatggctcagaactgtcagg
gcctaggcagccaattttgggtggggaaggcactagggagggagagtgaa
accagaggggacaggcagggcagaacaggacgaggagggggaaagctgtg
gttgtcggttggtcatgacaataaagctaggcatggcatcgttccgctga
gccgggagtcctgggtcagatggcaatcagggaacggtgggggagaaatc
gctgcctagtcagctcagcgtccggccctagccctggcagcccacaactc
agtggagcgggtgtgcgatggagactccaaggcaacggttccttggttac
cgttccctggcgaccatgattctcatccctcattggccagagccaggaat
ctacctggtgcgtgccttggtacccgctgcccctcccccttttgggaggg
agaagaatctggtgctcaatgctgggcatcccctggtaaccatggcaacc
cagcaattggcacagaaatcagcccaccagagctgcattctcctcgaaca
caaaggaccctggggacatcctcagactcaatctctccctctctgagatg
gggatgaggttgctgtgaccactccccgactctgaccctaagatctggtc
ttctagccctgaggcagcctctgccctccctgaagcctcctaggactacc
atatagactgaagccgaccagaaagctaaactaatgactttccttcctcc
ctagccttttctgctctgtatttattcttggcaggcatactaacgcatcc
atttcatggaaaggtatgtagttattcttcccttgagccacccctcaacc
catcctgatgcatgcaccacgctggacatacatgaagaagagactcttgg
gtccctgagatttagaagggctcagaccttgctcatctcccatttccctt
ctaagtcaggaggctggggtgtgcgagaaaatgaaaaagcgaaaatggat
gaaagggggggagcaaggagg
gaattcaaggccagcctggcctacaaagcaagttccaggacacagagaaa
cctcctctcaacaaaaataaataaataaataaatatttaaaaattaaaat
agccgggcctggtggtgcatgcctttaatcccagcattcgggaggcagag
gcacgtagatttctgagttcgaggccagtctagtccataaagtgagtccc
aggatagccagggctatacagagaaaccctgtctccaaaaaccaaaaaaa
taaaaaataattaaaataaagggggtggggggcggtaagtgggaagctaa
aatctcagaactacctttactactgggaggccgtagcagacactgtataa
tttttcctgtttagatgggtcactgcccatcaactactattcattcatga
tacctgcctggttcctggtcaggaaaaattcagaggctttagattctggg
gacacctagaacctttaaaacggctgctaaggtgctggtattatcatgct
cttctcctgtttgtcactgtgatttcctgtgaagccaggctcttacgagg
ctgcggctcgattacaaatggactctgttacactcagtctccttttagac
ctgcactctggcataggtaaatccccctgggcttccataaaagagtcttt
cctataactcccttgcagtagatcttgccacccctccttgcggccggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55584738_55585806
seq2: B6Ng01-085A18.b_46_1116

seq1  GAATTCTTACCTCCTGACGCTGCAAGCTTGAGGTCATCTGAGCCATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTCCTGACGCTGCAAGCTTGAGGTCATCTGAGCCATCCTC  50

seq1  GTATGTGTACAGAGCCCTGAGGAGAGGGAGGATGGCTCAGAACTGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTACAGAGCCCTGAGGAGAGGGAGGATGGCTCAGAACTGTCAGG  100

seq1  GCCTAGGCAGCCAATTTTGGGTGGGGAAGGCACTAGGGAGGGAGAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGCAGCCAATTTTGGGTGGGGAAGGCACTAGGGAGGGAGAGTGAA  150

seq1  ACCAGAGGGGACAGGCAGGGCAGAACAGGACGAGGAGGGGGAAAGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGGGACAGGCAGGGCAGAACAGGACGAGGAGGGGGAAAGCTGTG  200

seq1  GTTGTCGGTTGGTCATGACAATAAAGCTAGGCATGGCATCGTTCCGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCGGTTGGTCATGACAATAAAGCTAGGCATGGCATCGTTCCGCTGA  250

seq1  GCCGGGAGTCCTGGGTCAGATGGCAATCAGGGAACGGTGGGGGAGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGAGTCCTGGGTCAGATGGCAATCAGGGAACGGTGGGGGAGAAATC  300

seq1  GCTGCCTAGTCAGCTCAGCGTCCGGCCCTAGCCCTGGCAGCCCACAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAGTCAGCTCAGCGTCCGGCCCTAGCCCTGGCAGCCCACAACTC  350

seq1  AGTGGAGCGGGTGTGCGATGGAGACTCCAAGGCAACGGTTCCTTGGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCGGGTGTGCGATGGAGACTCCAAGGCAACGGTTCCTTGGTTAC  400

seq1  CGTTCCCTGGCGACCATGATTCTCATCCCTCATTGGCCAGAGCCAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCTGGCGACCATGATTCTCATCCCTCATTGGCCAGAGCCAGGAAT  450

seq1  CTACCTGGTGCGTGCCTTGGTACCCGCTGCCCCTCCCCCTTTTGGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGTGCGTGCCTTGGTACCCGCTGCCCCTCCCCCTTTTGGGAGGG  500

seq1  AGAAGAATCTGGTGCTCAATGCTGGGCATCCCCTGGTAACCATGGCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATCTGGTGCTCAATGCTGGGCATCCCCTGGTAACCATGGCAACC  550

seq1  CAGCAATTGGCACAGAAATCAGCCCACCAGAGCTGCATTCTCCTCGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTGGCACAGAAATCAGCCCACCAGAGCTGCATTCTCCTCGAACA  600

seq1  CAAAGGACCCTGGGGACATCCTCAGACTCAATCTCTCCCTCTCTGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACCCTGGGGACATCCTCAGACTCAATCTCTCCCTCTCTGAGATG  650

seq1  GGGATGAGGTTGCTGTGACCACTCCCCGACTCTGACCCTAAGATCTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGGTTGCTGTGACCACTCCCCGACTCTGACCCTAAGATCTGGTC  700

seq1  TTCTAGCCCTGAGGCAGCCTCTGCCCTCCCTGAAGCCTCCTAGGACTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCCTGAGGCAGCCTCTGCCCTCCCTGAAGCCTCCTAGGACTACC  750

seq1  ATATAGACTGAAGCCGACCAGAAAGCTAAACTAATGAC-TTCCTTCCTCC  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATAGACTGAAGCCGACCAGAAAGCTAAACTAATGACTTTCCTTCCTCC  800

seq1  CTAGCCTTTTCTGCTCTGTATTTATTCTTGGCAGGCATACTAACGCATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTTTCTGCTCTGTATTTATTCTTGGCAGGCATACTAACGCATCC  850

seq1  ATTTCATGGAAGGTAATGTAGTTATTCTTCCCTTGAGCCACCCCTCAACC  899
      ||||||||||| |  |||||||||||||||||||||||||||||||||||
seq2  ATTTCATGGAAAGGTATGTAGTTATTCTTCCCTTGAGCCACCCCTCAACC  900

seq1  CATCCTGATGCAGGCACCACGCTGGACACACATGAAGAAGAGACTCTT-G  948
      |||||||||||| ||||||||||||||| ||||||||||||||||||| |
seq2  CATCCTGATGCATGCACCACGCTGGACATACATGAAGAAGAGACTCTTGG  950

seq1  GTCCCTGAGATTCAGAAGGGCTCAGAACCTTGCTCATCTCCCATTTCCCA  998
      |||||||||||| |||||||||||| ||||||||||||||||||||||| 
seq2  GTCCCTGAGATTTAGAAGGGCTCAG-ACCTTGCTCATCTCCCATTTCCCT  999

seq1  TCTAAGTCAGGAGGCTGGGGTGTGCGAGAAGATGAAAAAGCAGAGATGGA  1048
      |||||||||||||||||||||||||||||| ||||||||||  | |||||
seq2  TCTAAGTCAGGAGGCTGGGGTGTGCGAGAAAATGAAAAAGCGAAAATGGA  1049

seq1  GGAAA-GGGGGGAGCAGGGAGG  1069
       |||| |||||||||| |||||
seq2  TGAAAGGGGGGGAGCAAGGAGG  1071

seq1: chr13_55697003_55697695
seq2: B6Ng01-085A18.g_70_766 (reverse)

seq1  CCGGCCGCCCGG-TGGGTGGCAAGCTCTGCTGCTA-GGAGTTGCAGGAAA  48
      ||||||||  ||  |||||||||| ||| |||| | ||||||  ||||||
seq2  CCGGCCGCAAGGAGGGGTGGCAAGATCTACTGCAAGGGAGTTATAGGAAA  50

seq1  GACTC-TTTATGGAAGCCCA-GGGGACTTACCTATGCCAGAGTGCAGGTC  96
      ||||| |||||||||||||| ||||| |||||||||||||||||||||||
seq2  GACTCTTTTATGGAAGCCCAGGGGGATTTACCTATGCCAGAGTGCAGGTC  100

seq1  TAAAAGGTGACTGTGTGTTACAGAGTCCATTTGTAATCGAGCCGCAGCCT  146
      ||||||| ||||| |||| |||||||||||||||||||||||||||||||
seq2  TAAAAGGAGACTGAGTGTAACAGAGTCCATTTGTAATCGAGCCGCAGCCT  150

seq1  CGTAAGAGCCTGGCTTCACAGGAAATCACAGTGACAAACAGGAGAAGAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAGCCTGGCTTCACAGGAAATCACAGTGACAAACAGGAGAAGAGC  200

seq1  ATGATAATACCAGCACCTTAGCAGCCGTTTTAAAGGTTCTAGGTGTCCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATACCAGCACCTTAGCAGCCGTTTTAAAGGTTCTAGGTGTCCCC  250

seq1  AGAATCTAAAGCCTCTGAATTTTTCCTGACCAGGAACCAGGCAGGTATCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTAAAGCCTCTGAATTTTTCCTGACCAGGAACCAGGCAGGTATCA  300

seq1  TGAATGAATTGTAGTTGATGGGCAGTGACCCATCTAAACAGGAAAAATTA  346
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATAGTAGTTGATGGGCAGTGACCCATCTAAACAGGAAAAATTA  350

seq1  TACAGTGTCTGCTACGGCCTCCCAGTAGTAAAGGTAGTTCTGAGATTTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTCTGCTACGGCCTCCCAGTAGTAAAGGTAGTTCTGAGATTTTA  400

seq1  GCTTCCCACTTACCGCCCCCCACCCCCTTTATTTTAATTATTTTTTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCACTTACCGCCCCCCACCCCCTTTATTTTAATTATTTTTTATTT  450

seq1  TTTTGGTTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGG  500

seq1  ACTCACTTTATGGACTAGACTGGCCTCGAACTCAGAAATCTACGTGCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTATGGACTAGACTGGCCTCGAACTCAGAAATCTACGTGCCTC  550

seq1  TGCCTCCCGAATGCTGGGATTAAAGGCATGCACCACCAGGCCCGGCTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGAATGCTGGGATTAAAGGCATGCACCACCAGGCCCGGCTATT  600

seq1  TTAATTTTTAAATATTTATTTATTTATTTATTTTTGTTGAGAGGAGGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTAAATATTTATTTATTTATTTATTTTTGTTGAGAGGAGGTTT  650

seq1  CTCTGTGTCCTGGAACTTGCTTTGTAGGCCAGGCTGGCCTTGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCCTGGAACTTGCTTTGTAGGCCAGGCTGGCCTTGAATTC  697