BAC Information

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BAC

Clone NameB6Ng01-086H13
Chromosome13 (Build37)9 (Build37)
Map Location 77,606,862 - 77,607,4616,486,526 - 6,487,759
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H13.bB6Ng01-086H13.g
ACCDH899860DH899861
length1,0511,222
definitionDH899860|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H13, 5' end.DH899861|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,606,862 - 77,607,461)(6,486,526 - 6,487,759)
sequence
gaattcatggccagtcctacccacagttgctgaggctatgaaacctagaa
caaatctattactgcctctttcatgctccagggtttgtttgttttttggg
tttttttttgtatattttatttatttacatctcaaatgttatcccctttt
ccagtttcccctctgaaagcccccaattccatcctgctcccccctgcttc
tatgagggtgctgccccacctacccattcccacctcactgccctggcatt
cccctacactgggacatcaagccttcaccagaccaagggcctccactccc
actgatgctagataagggcatcatctgttatatgtgcagatggagccatg
gatcctatttggttggtggtttactctctgggagctctggggaggtctgg
ttggtcgatattgttgttcttcctatggggttgcaaaccccttcagctcc
ttcagtctttcccctaattcctccactggggtctctgtgctcagtccaat
tgttggctgcaagcatctggtgtcagtatttgtcaggctatggtagagac
tctctggagacagctatagcaggctgctgtcagcaagcacttcttggcat
cagcaatagtggctgggtttggtgtctgtatatgggtagatccccagatg
gggcagtctctgggtggtctttccttcagtctctgctccacactttgacc
ccgtatttcctttagaattgctttaggagcaattctgagttaaaaatttg
gaaatcagggggtggccccatgccccaaccaggagccttgcctaacctct
gaatatgatctctacaggttctccctcccctttgttgggtacttcagata
atatcctccctaatatgtcctgggagccttttgctttcctggcatctgag
actttcttgtggctacatcccccatttcccatcccccattgctacacatg
ctccagtttttaactgcaatgttgtttacttgagttgaggttttctttgc
atattctaactctttttcagatgtctagatggtatttttcccatttgtag
g
gaattcccagaaaaaggagataaggaagtagactctgaacatgagaagaa
gaaaataagttttagaaaagcagttatcccctgtttgagatcttttagca
aaaaagagaaaaaatgaaaataagctatttcagagctctcctggagacag
agggagagtgggagacatcccattttctctctgcctcctatggagatatt
cttagctctggttagtatatctgtgtccctttgagacaccaagttctatt
ccctgtctgtctattatctgtttttggtgcagcaaaacaaattgtccata
tatctgtcaattcatgtttgtctttgttttgtgatttgaatgattattgt
tctgtgtttcatgttgaaaaatataaatggttaaaacttgtttaaaaagc
agtttcaaaattatacagcacaagttgataagttagctacactgtggctg
ggagccaagtacagctaaaaaagccttgctgagggcctgattgcaaactg
agctcttaaaggggcaggcagccttttgcttgtaacagaaagttaactta
aaattgggaactcaaggttagaatctttctaaacaacatgaacaaacaca
agaaaacaggtctttaaggatacttcaacatagggatagtctttgagcca
agactctggcagagtgtttagattaaaaaaggtttgcatttgggttaagg
ctgagctcagaggggagcagcctcagcgcggcttgtatggcacttcttag
agccttattacagacctagccagatgttgttctaaataaaatttaaattc
aacatttatagaaggtcaattaggctgtggaatttatcaatacattgtga
tttgacttgcctactttatataaagttatagtgtacagagtttgcttaca
tgtataagtgtctgttccttgttcaaacagccattaatttggttattgca
aaatattaatgtttgatctattacataccatcatataaagtaaaactgat
aatcattatcctaagatagctaaaaaaatatttcatgcatgcttgtatat
ctttctaaaatccatgcaaaatatgcatccatttactgtgtttaaaaaat
aagctttattgaagaagaaaagttattgtgattaaatcgaaagatatttt
cttttgaattccttctgtttcagcacagaataaataattgtgtgtcttaa
agatggtttaaatgttgaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77606862_77607461
seq2: B6Ng01-086H13.b_47_646

seq1  GAATTCATGGCCAGTCCTACCCACAGTTGCTGAGGCTATGAAACCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCAGTCCTACCCACAGTTGCTGAGGCTATGAAACCTAGAA  50

seq1  CAAATCTATTACTGCCTCTTTCATGCTCCAGGGTTTGTTTGTTTTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATTACTGCCTCTTTCATGCTCCAGGGTTTGTTTGTTTTTTGGG  100

seq1  TTTTTTTTTGTATATTTTATTTATTTACATCTCAAATGTTATCCCCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTATATTTTATTTATTTACATCTCAAATGTTATCCCCTTTT  150

seq1  CCAGTTTCCCCTCTGAAAGCCCCCAATTCCATCCTGCTCCCCCCTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCCCTCTGAAAGCCCCCAATTCCATCCTGCTCCCCCCTGCTTC  200

seq1  TATGAGGGTGCTGCCCCACCTACCCATTCCCACCTCACTGCCCTGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTGCTGCCCCACCTACCCATTCCCACCTCACTGCCCTGGCATT  250

seq1  CCCCTACACTGGGACATCAAGCCTTCACCAGACCAAGGGCCTCCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACACTGGGACATCAAGCCTTCACCAGACCAAGGGCCTCCACTCCC  300

seq1  ACTGATGCTAGATAAGGGCATCATCTGTTATATGTGCAGATGGAGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCTAGATAAGGGCATCATCTGTTATATGTGCAGATGGAGCCATG  350

seq1  GATCCTATTTGGTTGGTGGTTTACTCTCTGGGAGCTCTGGGGAGGTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATTTGGTTGGTGGTTTACTCTCTGGGAGCTCTGGGGAGGTCTGG  400

seq1  TTGGTCGATATTGTTGTTCTTCCTATGGGGTTGCAAACCCCTTCAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCGATATTGTTGTTCTTCCTATGGGGTTGCAAACCCCTTCAGCTCC  450

seq1  TTCAGTCTTTCCCCTAATTCCTCCACTGGGGTCTCTGTGCTCAGTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTTCCCCTAATTCCTCCACTGGGGTCTCTGTGCTCAGTCCAAT  500

seq1  TGTTGGCTGCAAGCATCTGGTGTCAGTATTTGTCAGGCTATGGTAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGCAAGCATCTGGTGTCAGTATTTGTCAGGCTATGGTAGAGAC  550

seq1  TCTCTGGAGACAGCTATAGCAGGCTGCTGTCAGCAAGCACTTCTTGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGACAGCTATAGCAGGCTGCTGTCAGCAAGCACTTCTTGGCAT  600

seq1: chr9_6486526_6487759
seq2: B6Ng01-086H13.g_68_1287

seq1  ATTCCCAG-AAAAGGAGATAAGGAAGTAGAGTCTGAACATGAGAGAGAGA  49
      |||||||| ||||||||||||||||||||| ||||||||||||| ||| |
seq2  ATTCCCAGAAAAAGGAGATAAGGAAGTAGACTCTGAACATGAGA-AGA-A  48

seq1  GAAAATAAGTTTTAGAAAAGCAGTTATCCCCTGTTTGAGATCTTTTAACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAATAAGTTTTAGAAAAGCAGTTATCCCCTGTTTGAGATCTTTTAGCA  98

seq1  AAAAAGAGAAAAAATGAAAATAAGCTATTTCAGAGCGCTCCTGGGAACAG  149
      |||||||||||||||||||||||||||||||||||| |||||||  ||||
seq2  AAAAAGAGAAAAAATGAAAATAAGCTATTTCAGAGCTCTCCTGGAGACAG  148

seq1  AAAGAAAATAAAAGTCGTCCTGTTTCCTCTCTGACTCCTATGGAAATGTT  199
      |  || | |   || | |||  ||| ||||||| |||||||||| || ||
seq2  AGGGAGAGTGGGAGACATCCCATTTTCTCTCTGCCTCCTATGGAGATATT  198

seq1  CTTAGCTCTGATTAGGATATTTGTGTCCCTTTGAGACACCAAATTCTATT  249
      |||||||||| |||| |||| ||||||||||||||||||||| |||||||
seq2  CTTAGCTCTGGTTAGTATATCTGTGTCCCTTTGAGACACCAAGTTCTATT  248

seq1  CCCTGTCTGTCTATTGTCTTTTTTTGGTGCACCAAAA-AAATTGTCCATA  298
      ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||
seq2  CCCTGTCTGTCTATTATCTGTTTTTGGTGCAGCAAAACAAATTGTCCATA  298

seq1  TATCTGTCAATTCATGTTTGTTTTTGTTTTGTTTTTTGAATGATTATTGT  348
      ||||||||||||||||||||| ||||||||||  ||||||||||||||||
seq2  TATCTGTCAATTCATGTTTGTCTTTGTTTTGTGATTTGAATGATTATTGT  348

seq1  TCTGTGTTTCATGTTGAAAAATATAAATGGTTAAAACTTTATCTGCTGGC  398
      |||||||||||||||||||||||||||||||||||||             
seq2  TCTGTGTTTCATGTTGAAAAATATAAATGGTTAAAAC-------------  385

seq1  TGTCCATCCTTTGATTTAGTTTAAGTTGTTTAAAAAGCAG--TCAAAATT  446
                               |||||||||||||||  |||||| |
seq2  -------------------------TTGTTTAAAAAGCAGTTTCAAAA-T  409

seq1  TGCACAGTACAAACTGATAAGTTAGCTGCACTGTGGCTGAGAGTCAAGTA  496
      |  |||| ||||  ||||||||||||| ||||||||||| ||| ||||||
seq2  TATACAGCACAAGTTGATAAGTTAGCTACACTGTGGCTGGGAGCCAAGTA  459

seq1  CAGCTGAAAAAGCCTTGCTGAGGGCC-GAGTGCAAACAGAGCTCTTAAAG  545
      ||||| |||||||||||||||||||| || ||||||| ||||||||||||
seq2  CAGCTAAAAAAGCCTTGCTGAGGGCCTGATTGCAAACTGAGCTCTTAAAG  509

seq1  GGACAGACAGCCTTTCGCTTGTAACAGAAAGTTAGCTTAAAATTGGGAAC  595
      || ||| |||||||| |||||||||||||||||| |||||||||||||||
seq2  GGGCAGGCAGCCTTTTGCTTGTAACAGAAAGTTAACTTAAAATTGGGAAC  559

seq1  TCAAGGTTAGAGTCTTTCTAAAAAACATAAACAAACACAAGAAAACAAGT  645
      ||||||||||| |||||||||| ||||| |||||||||||||||||| ||
seq2  TCAAGGTTAGAATCTTTCTAAACAACATGAACAAACACAAGAAAACAGGT  609

seq1  CTTTAAGGATACTTCAATATAGGGATAATCTTTGAGCCAAGACTCTGGCA  695
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CTTTAAGGATACTTCAACATAGGGATAGTCTTTGAGCCAAGACTCTGGCA  659

seq1  GAGTGTTTAGATTGAAAAAAGTTTGCATTTGGGTTGAGGCAGAGCTCAGA  745
      ||||||||||||| ||||| ||||||||||||||| |||| |||||||||
seq2  GAGTGTTTAGATTAAAAAAGGTTTGCATTTGGGTTAAGGCTGAGCTCAGA  709

seq1  GGGGAGCAGCTTCAGCTCGGCTTGTGTGGCACTTCTTAGAGCCTTATTAC  795
      |||||||||| ||||| |||||||| ||||||||||||||||||||||||
seq2  GGGGAGCAGCCTCAGCGCGGCTTGTATGGCACTTCTTAGAGCCTTATTAC  759

seq1  AGACATAGCCAGATGTTGTTCTAAATAAAATTTAAATTCAAAAGTATATA  845
      |||| |||||||||||||||||||||||||||||||||||| | | ||||
seq2  AGACCTAGCCAGATGTTGTTCTAAATAAAATTTAAATTCAACA-TTTATA  808

seq1  AGAGGTCAATCAGGCTGTGAAATTTATCAGTACATTGCGATTTGACTTGC  895
        |||||||| |||||||| ||||||||| ||||||| ||||||||||||
seq2  GAAGGTCAATTAGGCTGTGGAATTTATCAATACATTGTGATTTGACTTGC  858

seq1  CTACTTTATATAAAGTTATAGTGTACAGAGTTTGCTTACATGTATAAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTATATAAAGTTATAGTGTACAGAGTTTGCTTACATGTATAAGTG  908

seq1  TCTTTTCCTTGTTCCAAACAGCCATTAATTTGGTTATTACAGAATATTGA  995
      ||| ||||||||| |||||||||||||||||||||||| || |||||| |
seq2  TCTGTTCCTTGTT-CAAACAGCCATTAATTTGGTTATTGCAAAATATTAA  957

seq1  TGTTTGATCTATTACATACCATCATATGAAGTAAAATTGATAATCATTAT  1045
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  TGTTTGATCTATTACATACCATCATATAAAGTAAAACTGATAATCATTAT  1007

seq1  CCTAAGATAGTTAAAAAATTATTTCATGCATGC-----------------  1078
      |||||||||| ||||||| ||||||||||||||                 
seq2  CCTAAGATAGCTAAAAAAATATTTCATGCATGCTTGTATATCTTTCTAAA  1057

seq1  -------------ATGCATCCCATTTACTGTGTTTAAAAAATAGCCTTTA  1115
                   |||||| |||||||||||||||||||||||  |||||
seq2  ATCCATGCAAAATATGCAT-CCATTTACTGTGTTTAAAAAATAAGCTTTA  1106

seq1  TATAAGAAGAAAAAAGTATATGTGAATTAAATCACATGAT-TATTCTTTT  1164
      |  ||||||  ||||||   |||| ||||||||  | ||| | |||||||
seq2  TTGAAGAAG--AAAAGTTATTGTG-ATTAAATCGAAAGATATTTTCTTTT  1153

seq1  GAGTTTCCTCCTGTTTCAGCACAG-ATAATTAAAT-TGTGTGCTGAAGAT  1212
      ||  ||||| |||||||||||||| |||| ||| | |||||  | |||||
seq2  GA-ATTCCTTCTGTTTCAGCACAGAATAAATAATTGTGTGTCTTAAAGAT  1202

seq1  GGTGTTTAAAAATGTTGAACAA  1234
      ||| |    |||||||||||||
seq2  GGTTT----AAATGTTGAACAA  1220