BAC Information

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BAC

Clone NameB6Ng01-086H16
Chromosome13 (Build37)
Map Location 103,725,050 - 103,856,145
singlet/doubletdoublet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H16.bB6Ng01-086H16.g
ACCDH899866DH899867
length1,1931,167
definitionDH899866|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H16, 5' end.DH899867|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,725,050 - 103,726,258)(103,854,973 - 103,856,145)
sequence
gaattctctatgttctagccctctatgaagtcactgatgaaaagaagtgt
ttttagacatgaatacaggacttaagactcttcagtgtgttactgtagca
aggactatattacatgatgctgtcatgttctctgatgactgcccaaggtc
attaatcactaacttaaatatttcttataaattccaaatcaagaaaagat
ggagaaggtctggtatggtggtacacatctttaatcttagtacttgggag
gcagatgtccaaggccaacctgtcctatgtaaagtgagttctaagccatc
tagagctatgcgttgagaccctatctttaaaacagagaaaatatcagagc
tccaaaaccaaaatgttttatttcatcagagggatcaattatgttctgct
gtatccctaaacatcagagactttccgtgaaatactgacattaggaatct
tactcaagtgtcaaatgtaaaaataccctgtacaaaaatttgagttcttg
cacaacttcatctcaaccaaattgatatattatatgaaatataatatata
tgtatatctattgctgtgggcctaagattcaaatataactcagccatcta
ttgtgctgcagctggctatagctaccagagtagccttggcacacaggata
ttgacctgtgccagatgtgtgtatctgaagtgctgtcagagctagtcagt
tatttacatctgcctatccagatgtgattcagaaatgatgaaaccgttgt
ttgtatctaaatagaatttcacatccagcaagtatcttgaagtcagagag
ggcattttttttcctcaaaagtcttcacacacacacacacacacacacac
acacacacacacacacacacacaccacacacacaccccacactaccacca
ccatcacagtgcatgacaataatttacccttgacaaataaagaggaaaac
actccacagagtatgctgtacaatgcataacaactgcttgtattcataat
ctgcagatgtcctgagccaaatgtgtctaaatatacaccattcctcaccc
cctaatggccttgcctgctgcggggttagctaagtttaacactgtttcct
cacaagcccgaaaacttccggcatgtcctgcagaccctcaccagtgagaa
aatatgcaaatagtccagaatccagaatgaaataaaatcaacc
gaattccagacctctcatcagcatggctggaggtgcagaaatgttgaatg
gccagggtagctctcggccattaggtggtggcatggaggggactcttctc
actctgctttagagaaggacggggctcccgatgccaccatatgagcgata
tgagcagattctatgcagacttgcttttccccctttcttaatgttgaata
actttaaaaggcaaattgcaatgcaccaggattgtgaagcaaatttgaat
tcaaagtaagggtttcatcacgaattcaatcccggggttttcttttggct
tgcaactgcagacgtaggagagtcacattattgtgaaaccttgacaaaag
agaaatcccgtgattagatgcgggctttatgcataatctctagtttgcat
cctcagcacttttggggaagtgaaagccatgggagaaaagcactaggtgg
cttttctaccccaattgtttcctctctccctggcagatccacagctcaca
gcccacagccctgtgactttttttgaagcagcagtacagtcttgaacttg
aagcgaggcctgagggctcagcagctatgactgggcagaggatagaagca
gccaacccgcagttgctccctccctagttgcagcagcctaggtttccttg
gacatttttttttcccctatctccctgtctctgtgcctgcttcccactcc
tcttttccccatgtctcattctcccttctcttcctgtctctcctctcttc
ctacctcagctactgtctgccaaggcatcttggcctctgggtgcctggtt
ggctttggcctggggtggagatcccagcaggagactggagggaagcgaga
agaacagaagtaaggccacagtcactgcccttctacctgcttgtggcact
gacccaggtcagccgagggctgtcttggtacaaaagggcttctcagtgtt
ccacttcagatttggaagcaactatctcctttcgagaggcagccagcagt
cttgtgtaagcactctgtcaatgctttacagaccctgcctccaaacccga
caggtgcttcttcattctgcaagaatctgactgaagccctaggtgtcatt
cattgtatgtacttgtcctgatatataaaatttgtttcactccactgact
agagaaatatttatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103725050_103726258
seq2: B6Ng01-086H16.b_44_1236

seq1  GAATTCTCTATGTTCTAGCCCTCTATGAAGTCACTGATGAAAAGAAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTTCTAGCCCTCTATGAAGTCACTGATGAAAAGAAGTGT  50

seq1  TTTTAGACATGAATACAGGACTTAAGACTCTTCAGTGTGTTACTGTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACATGAATACAGGACTTAAGACTCTTCAGTGTGTTACTGTAGCA  100

seq1  AGGACTATATTACATGATGCTGTCATGTTCTCTGATGACTGCCCAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATATTACATGATGCTGTCATGTTCTCTGATGACTGCCCAAGGTC  150

seq1  ATTAATCACTAACTTAAATATTTCTTATAAATTCCAAATCAAGAAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCACTAACTTAAATATTTCTTATAAATTCCAAATCAAGAAAAGAT  200

seq1  GGAGAAGGTCTGGTATGGTGGTACACATCTTTAATCTTAGTACTTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTCTGGTATGGTGGTACACATCTTTAATCTTAGTACTTGGGAG  250

seq1  GCAGATGTCCAAGGCCAACCTGTCCTATGTAAAGTGAGTTCTAAGCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTCCAAGGCCAACCTGTCCTATGTAAAGTGAGTTCTAAGCCATC  300

seq1  TAGAGCTATGCGTTGAGACCCTATCTTTAAAACAGAGAAAATATCAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTATGCGTTGAGACCCTATCTTTAAAACAGAGAAAATATCAGAGC  350

seq1  TCCAAAACCAAAATGTTTTATTTCATCAGAGGGATCAATTATGTTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACCAAAATGTTTTATTTCATCAGAGGGATCAATTATGTTCTGCT  400

seq1  GTATCCCTAAACATCAGAGACTTTCCGTGAAATACTGACATTAGGAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTAAACATCAGAGACTTTCCGTGAAATACTGACATTAGGAATCT  450

seq1  TACTCAAGTGTCAAATGTAAAAATACCCTGTACAAAAATTTGAGTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGTGTCAAATGTAAAAATACCCTGTACAAAAATTTGAGTTCTTG  500

seq1  CACAACTTCATCTCAACCAAATTGATATATTATATGAAATATAATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTCATCTCAACCAAATTGATATATTATATGAAATATAATATATA  550

seq1  TGTATATCTATTGCTGTGGGCCTAAGATTCAAATATAACTCAGCCATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTATTGCTGTGGGCCTAAGATTCAAATATAACTCAGCCATCTA  600

seq1  TTGTGCTGCAGCTGGCTATAGCTACCAGAGTAGCCTTGGCACACAGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGCAGCTGGCTATAGCTACCAGAGTAGCCTTGGCACACAGGATA  650

seq1  TTGACCTGTGCCAGATGTGTGTATCTGAAGTGCTGTCAGAGCTAGTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGTGCCAGATGTGTGTATCTGAAGTGCTGTCAGAGCTAGTCAGT  700

seq1  TATTTACATCTGCCTATCCAGATGTGATTCAGAAATGATGAAACCGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATCTGCCTATCCAGATGTGATTCAGAAATGATGAAACCGTTGT  750

seq1  TTGTATCTAAATAGAATTTCACATCCAGCAAGTATCTTGAAGTCAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTAAATAGAATTTCACATCCAGCAAGTATCTTGAAGTCAGAGAG  800

seq1  GGCA-TTTTTTTCCTCAAAAGTCTTCAACACACACACACACACACACACA  849
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCATTTTTTTTCCTCAAAAGTCTTC-ACACACACACACACACACACACA  849

seq1  CACACACACACACACACACACACACCACACACACACCCCACACTACCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCACACACACACCCCACACTACCACC  899

seq1  ACCATCACAGTGCATGACAATAATTTACCCTTGACAAATTAAAGAGGAAA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCATCACAGTGCATGACAATAATTTACCCTTGACAAA-TAAAGAGGAAA  948

seq1  ACACTCCACAGAGTATGCTGTACAATGCATAACAACTGCTTGTATTCATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCACAGAGTATGCTGTACAATGCATAACAACTGCTTGTATTCATA  998

seq1  ATCTGCAGGATGTCCTGAGCCAAATGTGGTCTAAATATACA-CATT-CTC  1047
      ||||||| ||||||||||||||||||| ||||||||||||| |||| |||
seq2  ATCTGCA-GATGTCCTGAGCCAAATGT-GTCTAAATATACACCATTCCTC  1046

seq1  ACACTCTTAATGGCTTTGCCTGCTGCGGGGGTTAGCTAAGTTTTTAACAA  1097
      || | | ||||||| ||||||||||| |||||||||||||  |||||| |
seq2  AC-CCCCTAATGGCCTTGCCTGCTGC-GGGGTTAGCTAAG--TTTAAC-A  1091

seq1  CTGTTT-CTCACAAAGCCCGAAGACATTTTCGGCATTGTCTGCAGAGCAC  1146
      |||||| ||||| ||||||||| ||  || ||||||   ||||||| | |
seq2  CTGTTTCCTCAC-AAGCCCGAAAAC--TTCCGGCATGTCCTGCAGA-CCC  1137

seq1  TCACCAAGTGAGGAAATTATTGCCAAATAGTCCAGTATCTCAGGTATGGA  1196
      ||||| ||||| |||| |||   |||||||||||| ||| |||  |  ||
seq2  TCACC-AGTGA-GAAAATAT--GCAAATAGTCCAGAATC-CAG--AATGA  1180

seq1  AATAAAATCAACC  1209
      |||||||||||||
seq2  AATAAAATCAACC  1193

seq1: chr13_103854973_103856145
seq2: B6Ng01-086H16.g_68_1234 (reverse)

seq1  TCCATAAATACTTCCTAAGTCAGT-GAGTGAAACAAAATTTTATATATCC  49
      |||||||||| |||   ||||||| ||||||||| ||||||||||||| |
seq2  TCCATAAATATTTCTCTAGTCAGTGGAGTGAAAC-AAATTTTATATAT-C  48

seq1  AGGACAGTTACATACAATGAAATGAACACCTAGGCTTCCAGTCAGAATTC  99
      ||||||  ||||||||||| |||| |||||||||  | |||||||| |  
seq2  AGGACAAGTACATACAATG-AATG-ACACCTAGGGCTTCAGTCAGATTCT  96

seq1  TGCAGGATGGAGAAGGCACTGTCGGGTTTGGAGGCAGGGTCTGTAAAGCA  149
      ||||| ||| |||||   ||||||||||||||||||||||||||||||||
seq2  TGCAGAATGAAGAAGCACCTGTCGGGTTTGGAGGCAGGGTCTGTAAAGCA  146

seq1  TTTGACAGAGTGCTTACACAGGACTGCTGGCTGCCTCTCGAAGGGAGATA  199
       ||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  -TTGACAGAGTGCTTACACAAGACTGCTGGCTGCCTCTCGAAAGGAGATA  195

seq1  GTTGCTTCCAAAATCTGAAGTGGAACACTGAGAAGCCCTTTTGTACCAGG  249
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  GTTGCTTCC-AAATCTGAAGTGGAACACTGAGAAGCCCTTTTGTACCAAG  244

seq1  ACAGCCCTCGGCTGACCTGGGTCAGTGCCACAAGCAGGTAGAAGGGCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTCGGCTGACCTGGGTCAGTGCCACAAGCAGGTAGAAGGGCAGT  294

seq1  GACTGTGGCCTTACTTTCTGTTCTTCTCGCTTCCCTCCAGTCTCCTGCTG  349
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACTGTGGCCTTAC-TTCTGTTCTTCTCGCTTCCCTCCAGTCTCCTGCTG  343

seq1  GGATCTCCACCCCAGGCCAAAGCCAACCAGGCACCCAGAGGCCAAGATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCACCCCAGGCCAAAGCCAACCAGGCACCCAGAGGCCAAGATGC  393

seq1  CTTGGCAGACAGTAGCTGAGGTAGGAAGAGAGGAGAGACAGGAAGAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGACAGTAGCTGAGGTAGGAAGAGAGGAGAGACAGGAAGAGAAG  443

seq1  GGAGAATGAGACATGGGGAAAAGAGGAGTGGGAAGCAGGCACAGAGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGAGACATGGGGAAAAGAGGAGTGGGAAGCAGGCACAGAGACAG  493

seq1  GGAGATAGGGGAAAAAAAAATGTCCAAGGAAACCTAGGCTGCTGCAACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAGGGGAAAAAAAAATGTCCAAGGAAACCTAGGCTGCTGCAACTA  543

seq1  GGGAGGGAGCAACTGCGGGTTGGCTGCTTCTATCCTCTGCCCAGTCATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGCAACTGCGGGTTGGCTGCTTCTATCCTCTGCCCAGTCATAG  593

seq1  CTGCTGAGCCCTCAGGCCTCGCTTCAAGTTCAAGACTGTACTGCTGCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCCCTCAGGCCTCGCTTCAAGTTCAAGACTGTACTGCTGCTTC  643

seq1  AAAAAAAGTCACAGGGCTGTGGGCTGTGAGCTGTGGATCTGCCAGGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCACAGGGCTGTGGGCTGTGAGCTGTGGATCTGCCAGGGAGA  693

seq1  GAGGAAACAATTGGGGTAGAAAAGCCACCTAGTGCTTTTCTCCCATGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAATTGGGGTAGAAAAGCCACCTAGTGCTTTTCTCCCATGGCT  743

seq1  TTCACTTCCCCAAAAGTGCTGAGGATGCAAACTAGAGATTATGCATAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCCCCAAAAGTGCTGAGGATGCAAACTAGAGATTATGCATAAAG  793

seq1  CCCGCATCTAATCACGGGATTTCTCTTTTGTCAAGGTTTCACAATAATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCATCTAATCACGGGATTTCTCTTTTGTCAAGGTTTCACAATAATGT  843

seq1  GACTCTCCTACGTCTGCAGTTGCAAGCCAAAAGAAAACCCCGGGATTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCTACGTCTGCAGTTGCAAGCCAAAAGAAAACCCCGGGATTGAA  893

seq1  TTCGTGATGAAACCCTTACTTTGAATTCAAATTTGCTTCACAATCCTGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGATGAAACCCTTACTTTGAATTCAAATTTGCTTCACAATCCTGGT  943

seq1  GCATTGCAATTTGCCTTTTAAAGTTATTCAACATTAAGAAAGGGGGAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAATTTGCCTTTTAAAGTTATTCAACATTAAGAAAGGGGGAAAA  993

seq1  GCAAGTCTGCATAGAATCTGCTCATATCGCTCATATGGTGGCATCGGGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTGCATAGAATCTGCTCATATCGCTCATATGGTGGCATCGGGAG  1043

seq1  CCCCGTCCTTCTCTAAAGCAGAGTGAGAAGAGTCCCCTCCATGCCACCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTCCTTCTCTAAAGCAGAGTGAGAAGAGTCCCCTCCATGCCACCAC  1093

seq1  CTAATGGCCGAGAGCTACCCTGGCCATTCAACATTTCTGCACCTCCAGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCCGAGAGCTACCCTGGCCATTCAACATTTCTGCACCTCCAGCC  1143

seq1  ATGCTGATGAGAGGTCTGGAATTC  1173
      ||||||||||||||||||||||||
seq2  ATGCTGATGAGAGGTCTGGAATTC  1167