BAC Information

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BAC

Clone NameB6Ng01-086K15
Chromosome13 (Build37)
Map Location 110,007,792 - 110,177,077
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream geneLOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086K15.bB6Ng01-086K15.g
ACCDH900001DH900002
length8471,098
definitionDH900001|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K15, 5' end.DH900002|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,007,792 - 110,008,638)(110,175,972 - 110,177,077)
sequence
gaattccttagcttaaaatgggcagtaatccccaattttaagattagtgc
tctactagtgagtcgcttggggctaatgagcagaagtgagctcccagggg
attctgaatgctagtcttgtgtctcagttgggtcttggagatctctgtgt
gtttaactttgcaaatcaaatttattgatttttttattcataatttatac
acctgtgtttggacttaggatccatttgtaagcaacaatatgatctatcc
tatgttagaatcattgaagccaagacatccataccctcctttgtcatgta
aaggcgtgcctgattctgggaagtgttctcagtgaatgttgaagagaatc
taaggcatgtcatctcttgcagggtgcaaagtcacagagggatagtggtg
tttggttccctaggactctataaacccaaggtgtggggggggcatgggat
cagtcagcagtcagaggctctgtgcaaggagttctgatctcagtgaggcc
taaacaagaacaaggctaaactcaggacataagatcatggatcacccctt
aatatctctgggtgatctgggtatgcaatcatgttccccctcccctcccc
caggtctgtgaaagtcacactcctattgaatctctgtcattatttccagc
cttattgaaacctgactaatgaatcctcaccttcttcttccccctccccc
tcctcctttctcctctctcattcctatcaaggccactggccttctggact
ccctgaagatcttcttctgcctctcagagtaggtcccactctacctgaac
tgacgtgtatctctctctctctctctctctctctctctctctctctc
gaattcagggctatagagatgcttcagcagttaagagcaattactgctct
tgcagaggacttagattcagttttcagtgcctacgtggaggctcacaacc
atctgtaactgcagttcgacggaatatggcacccttttctggcctctata
ggcaccaggcaggcactggtgtccatgaatatatgtacatataggcaaga
gaaaagaccatacagataaatttaaaatgcatatttcaaaggacagaatt
taaaggtcagtgaatgaacaaacacacatgtctggaaataactcctagca
acagcgttaactgggagacagatgtagaaataaacctgtgagccgcaggg
cattggtattccccgttttgccccagttcctacagtatcgttattcatgg
tgttaaaaaacagacttgtatactgattgattttttttctttttcttttt
cttttttaggaaatgcaagagaaaggcacagtgtgaacaaatggagccca
ccacagcaggctgaggacacacacacacacacacacacacacacacacac
acacagtttgaagaagaaaacaggcaaatatgggcttcccaaaagccctt
gtgcctattctttcaaacactggtagatttctaatatggatttccaaatt
ccatatggtactaagggatggagttatggcggctcactggaattctcccc
cagaggcgctatgatttccaaagaccagttcagtagttccacgtaagtcc
atggcttttgttccagggcatatcagactagaagaaagaatcctgctaaa
tcccatcaactagaaatattttgatagcctaatatattccttaaagatct
gactattcatactgttcaataatttcactttaaaaaaataatgctaacaa
atcggcattatagctcatgtctgaaatcctggcactctgggggctgaagc
agagaatcaccgagttcgaaaagaaaactttacatatcagtgacttctca
attattaatatagatcaacagggcattttttctatgtatgcattcactat
agcaggttgcactctgctacctgtgcgagcctgaatctttgctgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110007792_110008638
seq2: B6Ng01-086K15.b_49_895

seq1  GAATTCCTTAGCTTAAAATGGGCAGTAATCCCCAATTTTAAGATTAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTTAAAATGGGCAGTAATCCCCAATTTTAAGATTAGTGC  50

seq1  TCTACTAGTGAGTCGCTTGGGGCTAATGAGCAGAAGTGAGCTCCCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAGTGAGTCGCTTGGGGCTAATGAGCAGAAGTGAGCTCCCAGGGG  100

seq1  ATTCTGAATGCTAGTCTTGTGTCTCAGTTGGGTCTTGGAGATCTCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATGCTAGTCTTGTGTCTCAGTTGGGTCTTGGAGATCTCTGTGT  150

seq1  GTTTAACTTTGCAAATCAAATTTATTGATTTTTTTATTCATAATTTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTTTGCAAATCAAATTTATTGATTTTTTTATTCATAATTTATAC  200

seq1  ACCTGTGTTTGGACTTAGGATCCATTTGTAAGCAACAATATGATCTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTTTGGACTTAGGATCCATTTGTAAGCAACAATATGATCTATCC  250

seq1  TATGTTAGAATCATTGAAGCCAAGACATCCATACCCTCCTTTGTCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGAATCATTGAAGCCAAGACATCCATACCCTCCTTTGTCATGTA  300

seq1  AAGGCGTGCCTGATTCTGGGAAGTGTTCTCAGTGAATGTTGAAGAGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCCTGATTCTGGGAAGTGTTCTCAGTGAATGTTGAAGAGAATC  350

seq1  TAAGGCATGTCATCTCTTGCAGGGTGCAAAGTCACAGAGGGATAGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATGTCATCTCTTGCAGGGTGCAAAGTCACAGAGGGATAGTGGTG  400

seq1  TTTGGTTCCCTAGGACTCTATAAACCCAAGGTGTGGGGGGGGCATGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCCCTAGGACTCTATAAACCCAAGGTGTGGGGGGGGCATGGGAT  450

seq1  CAGTCAGCAGTCAGAGGCTCTGTGCAAGGAGTTCTGATCTCAGTGAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCAGTCAGAGGCTCTGTGCAAGGAGTTCTGATCTCAGTGAGGCC  500

seq1  TAAACAAGAACAAGGCTAAACTCAGGACATAAGATCATGGATCACCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGAACAAGGCTAAACTCAGGACATAAGATCATGGATCACCCCTT  550

seq1  AATATCTCTGGGTGATCTGGGTATGCAATCATGTTCCCCCTCCCCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCTGGGTGATCTGGGTATGCAATCATGTTCCCCCTCCCCTCCCC  600

seq1  CAGGTCTGTGAAAGTCACACTCCTATTGAATCTCTGTCATTATTTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTGAAAGTCACACTCCTATTGAATCTCTGTCATTATTTCCAGC  650

seq1  CTTATTGAAACCTGACTAATGAATCCTCACCTTCTTCTTCCCCCTCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGAAACCTGACTAATGAATCCTCACCTTCTTCTTCCCCCTCCCCC  700

seq1  TCCTCCTTTCTCCTCTCTCATTCCTATCAAGGCCACTGGCCTTCTGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTCTCCTCTCTCATTCCTATCAAGGCCACTGGCCTTCTGGACT  750

seq1  CCCTGAAGATCTTCTTCTGCCTCTCAGAGTAGGTCCCACTCTACCTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGATCTTCTTCTGCCTCTCAGAGTAGGTCCCACTCTACCTGAAC  800

seq1  TGACGTGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  847
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  847

seq1: chr13_110175972_110177077
seq2: B6Ng01-086K15.g_69_1166 (reverse)

seq1  CACTCAGC-AAGATTCAGGCTCGCACAGGTAGCAGAGTGCAACCTTGCCT  49
      |||||||| ||||||||||||||||||||||||||||||||||||   ||
seq2  CACTCAGCAAAGATTCAGGCTCGCACAGGTAGCAGAGTGCAACCT--GCT  48

seq1  ATAAGTGAATGCATACATAG-AAAAATGCCCTGTTGATCTATATTTAATA  98
      || ||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  AT-AGTGAATGCATACATAGAAAAAATGCCCTGTTGATCTATA-TTAATA  96

seq1  ATTTGAGAAGTCACTGATAATGTTAAAGTTTTTCTTTTCGAACTCGGTGA  148
      | |||||||||||||||| ||| ||||| |||||||||||||||||||||
seq2  A-TTGAGAAGTCACTGAT-ATG-TAAAG-TTTTCTTTTCGAACTCGGTGA  142

seq1  TTCTCCTGCTTCAGCCCCCAGAGTGCCAGGATTTCAGACATGAGCTATAA  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCT-CTGCTTCAGCCCCCAGAGTGCCAGGATTTCAGACATGAGCTATAA  191

seq1  TGCCTGATTTGTTAGCATTATTTTTTTAAAGTGAAATTATTGAACAGTAT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCC-GATTTGTTAGCATTATTTTTTTAAAGTGAAATTATTGAACAGTAT  240

seq1  GAATAGTCAGATCTTTAAGGAATATATTAGGCTATCAAAATATTTCTAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTCAGATCTTTAAGGAATATATTAGGCTATCAAAATATTTCTAGT  290

seq1  TGATGGGATTTAGCAGGATTCTTTCTTCTAGTCTGATATGCCCTGGAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGATTTAGCAGGATTCTTTCTTCTAGTCTGATATGCCCTGGAACA  340

seq1  AAAGCCATGGACTTACGTGGAACTACTGAACTGGTCTTTGGAAATCATAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATGGACTTACGTGGAACTACTGAACTGGTCTTTGGAAATCATAG  390

seq1  CGCCTCTGGGGGAGAATTCCAGTGAGCCGCCATAACTCCATCCCTTAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGGGGGAGAATTCCAGTGAGCCGCCATAACTCCATCCCTTAGTA  440

seq1  CCATATGGAATTTGGAAATCCATATTAGAAATCTACCAGTGTTTGAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGAATTTGGAAATCCATATTAGAAATCTACCAGTGTTTGAAAGA  490

seq1  ATAGGCACAAGGGCTTTTGGGAAGCCCATATTTGCCTGTTTTCTTCTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCACAAGGGCTTTTGGGAAGCCCATATTTGCCTGTTTTCTTCTTCA  540

seq1  AACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCAGCC  590

seq1  TGCTGTGGTGGGCTCCATTTGTTCACACTGTGCCTTTCTCTTGCATTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTGGGCTCCATTTGTTCACACTGTGCCTTTCTCTTGCATTTCC  640

seq1  TAAAAAAGAAAAAGAAAAAGAAAAAAAATCAATCAGTATACAAGTCTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAAAAAGAAAAAGAAAAAAAATCAATCAGTATACAAGTCTGTT  690

seq1  TTTTAACACCATGAATAACGATACTGTAGGAACTGGGGCAAAACGGGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACACCATGAATAACGATACTGTAGGAACTGGGGCAAAACGGGGAA  740

seq1  TACCAATGCCCTGCGGCTCACAGGTTTATTTCTACATCTGTCTCCCAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGCCCTGCGGCTCACAGGTTTATTTCTACATCTGTCTCCCAGTT  790

seq1  AACGCTGTTGCTAGGAGTTATTTCCAGACATGTGTGTTTGTTCATTCACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGTTGCTAGGAGTTATTTCCAGACATGTGTGTTTGTTCATTCACT  840

seq1  GACCTTTAAATTCTGTCCTTTGAAATATGCATTTTAAATTTATCTGTATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTAAATTCTGTCCTTTGAAATATGCATTTTAAATTTATCTGTATG  890

seq1  GTCTTTTCTCTTGCCTATATGTACATATATTCATGGACACCAGTGCCTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTCTTGCCTATATGTACATATATTCATGGACACCAGTGCCTGC  940

seq1  CTGGTGCCTATAGAGGCCAGAAAAGGGTGCCATATTCCGTCGAACTGCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCTATAGAGGCCAGAAAAGGGTGCCATATTCCGTCGAACTGCAG  990

seq1  TTACAGATGGTTGTGAGCCTCCACGTAGGCACTGAAAACTGAATCTAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTTGTGAGCCTCCACGTAGGCACTGAAAACTGAATCTAAGT  1040

seq1  CCTCTGCAAGAGCAGTAATTGCTCTTAACTGCTGAAGCATCTCTATAGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAGAGCAGTAATTGCTCTTAACTGCTGAAGCATCTCTATAGCC  1090

seq1  CTGAATTC  1106
      ||||||||
seq2  CTGAATTC  1098