BAC Information

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BAC

Clone NameB6Ng01-087B07
Chromosome13 (Build37)
Map Location 52,013,794 - 52,188,394
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B07.bB6Ng01-087B07.g
ACCDH900307DH900308
length1,1811,126
definitionDH900307|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B07, 5' end.DH900308|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,187,199 - 52,188,394)(52,013,794 - 52,014,934)
sequence
gaattcagacatgtcattgtcacaccacatggcccctcacactgcactgc
cttatgaaatgtcatcctcacgcagcacacatgagtgttgaccagagtca
caggcccgctgcggaggccacactgccccatggtttctccttggctctga
atttctgaagttctagccccaggatcatcacagttatcctgaaaagtagg
gcaaccctcagctgggaagactgtttctggggcattgtccccagggtgtc
tgtgaatgtggctgccatgtgcagatagctgcggctgccagcagggacag
tggcagtggacacagcctgggtgtcaaaggcagcgacgtgttctattcat
gctgcctgctgtccccattcacaatggtgttttatgaatgaatactggaa
tcacggagcttagaatgcaagatttggtgccctgtggtccccagactctg
tccccactctgagaatgaggctatgtttgtcacccataactacagctgaa
tatcacacaggctagagcttaagtagcaaacatttgctttctctctgttc
tggagactgtaatccagggacaagggactggcatggctatggccaggtga
ggacccactttctgaggggcagatggtggattctggttgttcctttgtgt
gatgggctgggagacagaggaagacagacaccaaggaagcgccctctggt
aacttctttgttacaaaggctttttgggtggctggtgagatggttcagtg
ggaaaaggtgcttgccacacagacctggtgacctaaatttgatcctggaa
tctatgtgaatgtggaaaaaagtactgaggtctcaaagttgtcctgaggc
cttcacaactgagctgtgacatcccgtcatccctaatcactcacacatac
acacacacacacacacacacacacacacacacacacacagagagagagtg
agagagagagagagagagagagagagagagagagtaacatagatcaattt
cattacatcctattattctatagcagtcggtttcgtgtggacatctcata
atgtggatttgatcacattcactcccccctaccaggggtctccaccccct
actttaatcaatgagaaacatgcatatttatttccaagccgaaaagtata
aatctctataaaagaagagcaaaggaaggag
gaattcatgtacaccactctacctgccctgcccccaccttcacatgacat
ccccctgttgcagcagcagaatgcatggctggtaagaatgagatttattt
cttccgggttgaattggaggattcagccaagaagtgcagtcaccagcaat
atgtgatcacagggtagtaggttcatttctttttgctcactaaagaaatg
gaggaagaacacagcgattatctatctaaaatgaacaaaaaaacgaaggg
atctagattcccatgaagctgtccctgagctaagcttctctgggtcaccc
tggcttgtttaggttgctggacagctgagctctggcctccgcagggtcct
gactgctgcagtacagtctgctggcagtgggtctccagggtttgcgcctg
cctgctccccttttttttggggggggggcacagcatgtgtcccagactgg
ctgcggctttgttgtctgggccacagctttcttcagctttgcagatcttc
aaagcaatgacatgccgtgtcagatctgcccaaagtccaggcacgtggca
ggcgcccagcatgcaaattaatcggacgctctgcctgtggcctggggcac
cagccccacaccctttggaggcccagcaggtgctccaccgggcaggtgtg
ggcctcaccatatgctctgctgagcatctgagcatcgggtttcctccaga
atctttcaattgctcgccaggtgagataaagtgagtagaaagaagccctg
tatcaacctgtggttgcacgaatcacctctgggcaatgacagccctgagc
cccagcaatgacaggcagaagagagggacagatgtcgaggcggggcctca
gtgcagcctgcctctcagaagactggagaggtgtattgaaaagagactga
gacgtcgcggctcagtgggcccagtgcttgcctatcattacaaagccctg
gttctctcacagcaccacataaactggatgtggtggtgcgtccctaatcc
cagatgtttgttgaggcagaagatagttcaaggtcatttgactactaacg
aagtttgggggggcagccggacttcatgcaaacactgtctcaagtttttg
tatttaggagatctggagtgatgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_52187199_52188394
seq2: B6Ng01-087B07.b_44_1224 (reverse)

seq1  CTCCTTCCTCTCCCTCTTGGCTTCTTCTTTTATAATGAGAATTTATACTT  50
      ||||||||| | |         ||||||||||||  ||| ||||||||||
seq2  CTCCTTCCTTTGC---------TCTTCTTTTATA--GAG-ATTTATACTT  38

seq1  TTCTGCTTGAAAATAA--ATGCATG-TTCTCATTAGTATAAGTAGGGGGG  97
      ||| ||||| ||||||  ||||||| ||||||||  |  ||||| |||||
seq2  TTCGGCTTGGAAATAAATATGCATGTTTCTCATTGATTAAAGTA-GGGGG  87

seq1  TGGAGACCCCATGTAGTGGGGGAGTTGAATGTGATCAAAT-CACATTATG  146
      ||||||||||  |||| ||||||| ||||||||||||||| |||||||||
seq2  TGGAGACCCCTGGTAG-GGGGGAG-TGAATGTGATCAAATCCACATTATG  135

seq1  AGATGTCACAACGAAACCGACTGCTATAGAAATTAATAGGATGTTAATGA  196
      |||||||   |||||||||||||||||||||  |||||||||| ||||||
seq2  AGATGTCCACACGAAACCGACTGCTATAGAA--TAATAGGATG-TAATGA  182

seq1  AATTTATCTATTGTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  246
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCTA-TGTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  231

seq1  CACTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  281

seq1  GTATGTGTGAGTGATTAGGGATGACGGGATGTCACAGCTCAGTTGTGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGAGTGATTAGGGATGACGGGATGTCACAGCTCAGTTGTGAAG  331

seq1  GCCTCAGGACAACTTTGAGACCTCAGTACTTTTTTCCACATTCACATAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGACAACTTTGAGACCTCAGTACTTTTTTCCACATTCACATAGA  381

seq1  TTCCAGGATCAAATTTAGGTCACCAGGTCTGTGTGGCAAGCACCTTTTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGATCAAATTTAGGTCACCAGGTCTGTGTGGCAAGCACCTTTTCC  431

seq1  CACTGAACCATCTCACCAGCCACCCAAAAAGCCTTTGTAACAAAGAAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACCATCTCACCAGCCACCCAAAAAGCCTTTGTAACAAAGAAGTT  481

seq1  ACCAGAGGGCGCTTCCTTGGTGTCTGTCTTCCTCTGTCTCCCAGCCCATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGGCGCTTCCTTGGTGTCTGTCTTCCTCTGTCTCCCAGCCCATC  531

seq1  ACACAAAGGAACAACCAGAATCCACCATCTGCCCCTCAGAAAGTGGGTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGAACAACCAGAATCCACCATCTGCCCCTCAGAAAGTGGGTCC  581

seq1  TCACCTGGCCATAGCCATGCCAGTCCCTTGTCCCTGGATTACAGTCTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCCATAGCCATGCCAGTCCCTTGTCCCTGGATTACAGTCTCCA  631

seq1  GAACAGAGAGAAAGCAAATGTTTGCTACTTAAGCTCTAGCCTGTGTGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGAGAAAGCAAATGTTTGCTACTTAAGCTCTAGCCTGTGTGATA  681

seq1  TTCAGCTGTAGTTATGGGTGACAAACATAGCCTCATTCTCAGAGTGGGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTAGTTATGGGTGACAAACATAGCCTCATTCTCAGAGTGGGGA  731

seq1  CAGAGTCTGGGGACCACAGGGCACCAAATCTTGCATTCTAAGCTCCGTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTGGGGACCACAGGGCACCAAATCTTGCATTCTAAGCTCCGTGA  781

seq1  TTCCAGTATTCATTCATAAAACACCATTGTGAATGGGGACAGCAGGCAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTATTCATTCATAAAACACCATTGTGAATGGGGACAGCAGGCAGC  831

seq1  ATGAATAGAACACGTCGCTGCCTTTGACACCCAGGCTGTGTCCACTGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGAACACGTCGCTGCCTTTGACACCCAGGCTGTGTCCACTGCCA  881

seq1  CTGTCCCTGCTGGCAGCCGCAGCTATCTGCACATGGCAGCCACATTCACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGCTGGCAGCCGCAGCTATCTGCACATGGCAGCCACATTCACA  931

seq1  GACACCCTGGGGACAATGCCCCAGAAACAGTCTTCCCAGCTGAGGGTTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTGGGGACAATGCCCCAGAAACAGTCTTCCCAGCTGAGGGTTGC  981

seq1  CCTACTTTTCAGGATAACTGTGATGATCCTGGGGCTAGAACTTCAGAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTCAGGATAACTGTGATGATCCTGGGGCTAGAACTTCAGAAAT  1031

seq1  TCAGAGCCAAGGAGAAACCATGGGGCAGTGTGGCCTCCGCAGCGGGCCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCAAGGAGAAACCATGGGGCAGTGTGGCCTCCGCAGCGGGCCTG  1081

seq1  TGACTCTGGTCAACACTCATGTGTGCTGCGTGAGGATGACATTTCATAAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGTCAACACTCATGTGTGCTGCGTGAGGATGACATTTCATAAG  1131

seq1  GCAGTGCAGTGTGAGGGGCCATGTGGTGTGACAATGACATGTCTGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAGTGTGAGGGGCCATGTGGTGTGACAATGACATGTCTGAATTC  1181

seq1: chr13_52013794_52014934
seq2: B6Ng01-087B07.g_70_1195

seq1  GAATTCATGTACACCACTCTACCTGCCCTGCCCCCACCTTCACATGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTACACCACTCTACCTGCCCTGCCCCCACCTTCACATGACAT  50

seq1  CCCCCTGTTGCAGCAGCAGAATGCATGGCTGGTAAGAATGAGATTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGTTGCAGCAGCAGAATGCATGGCTGGTAAGAATGAGATTTATTT  100

seq1  CTTCCGGGTTGAATTGGAGGATTCAGCCAAGAAGTGCAGTCACCAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGGTTGAATTGGAGGATTCAGCCAAGAAGTGCAGTCACCAGCAAT  150

seq1  ATGTGATCACAGGGTAGTAGGTTCATTTCTTTTTGCTCACTAAAGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCACAGGGTAGTAGGTTCATTTCTTTTTGCTCACTAAAGAAATG  200

seq1  GAGGAAGAACACAGCGATTATCTATCTAAAATGAACAAAAAAACGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAACACAGCGATTATCTATCTAAAATGAACAAAAAAACGAAGGG  250

seq1  ATCTAGATTCCCATGAAGCTGTCCCTGAGCTAAGCTTCTCTGGGTCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATTCCCATGAAGCTGTCCCTGAGCTAAGCTTCTCTGGGTCACCC  300

seq1  TGGCTTGTTTAGGTTGCTGGACAGCTGAGCTCTGGCCTCCGCAGGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTTTAGGTTGCTGGACAGCTGAGCTCTGGCCTCCGCAGGGTCCT  350

seq1  GACTGCTGCAGTACAGTCTGCTGGCAGTGGGTCTCCAGGGTTTGCGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGCAGTACAGTCTGCTGGCAGTGGGTCTCCAGGGTTTGCGCCTG  400

seq1  CCTGCTCCCCTTTTTTTTGGGGGGGGGGCACAGCATGTGTCCCAGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCCTTTTTTTTGGGGGGGGGGCACAGCATGTGTCCCAGACTGG  450

seq1  CTGCGGCTTTGTTGTCTGGGCCACAGCTTTCTTCAGCTTTGCAGATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCTTTGTTGTCTGGGCCACAGCTTTCTTCAGCTTTGCAGATCTTC  500

seq1  AAAGCAATGACATGCCGTGTCAGATCTGCCCAAAGTCCAGGCACGTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGACATGCCGTGTCAGATCTGCCCAAAGTCCAGGCACGTGGCA  550

seq1  GGCGCCCAGCATGCAAATTAATCGGACGCTCTGCCTGTGGCCTGGGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCAGCATGCAAATTAATCGGACGCTCTGCCTGTGGCCTGGGGCAC  600

seq1  CAGCCCCACACCCTTTGGAGGCCCAGCAGGTGCTCCACCGGGCAGGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCACACCCTTTGGAGGCCCAGCAGGTGCTCCACCGGGCAGGTGTG  650

seq1  GGCCTCACCATATGCTCTGCTGAGCATCTGAGCATCGGGTTTCCTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCACCATATGCTCTGCTGAGCATCTGAGCATCGGGTTTCCTCCAGA  700

seq1  ATCTTTCAATTGCTCGCCAGGTGAGATAAAGTGAGTAGAAAGAAGCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAATTGCTCGCCAGGTGAGATAAAGTGAGTAGAAAGAAGCCCTG  750

seq1  TATCAACCTGTGGTTGCACGAATCACCTCTGGGCAATGACAGCCCTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCTGTGGTTGCACGAATCACCTCTGGGCAATGACAGCCCTGAGC  800

seq1  CCCAGCAATGACAGGCAGAAGAGAGGGACAGATGTCGAGGCGGGGCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAATGACAGGCAGAAGAGAGGGACAGATGTCGAGGCGGGGCCTCA  850

seq1  GTGCAGCCTGCCTCTCAGGAAGACTGGAGAGGTGTATTGAAAAGAGACTG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGCAGCCTGCCTCTCA-GAAGACTGGAGAGGTGTATTGAAAAGAGACTG  899

seq1  AGGACGTCGCGGCTCAGTGGGCCCAGTGCTTGCCTATCATTTACAAAGCC  950
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  A-GACGTCGCGGCTCAGTGGGCCCAGTGCTTGCCTATCA-TTACAAAGCC  947

seq1  CTGGGTTCTCTCACCAGCACCACATAAACTGGATGTGGTGGTGCGTCCCT  1000
      || |||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CT-GGTTCTCTCA-CAGCACCACATAAACTGGATGTGGTGGTGCGTCCC-  994

seq1  TAATCCCAAGATGTTTGGTGGAGGCAGAAAGATAAGTTCAAGGTCATTTT  1050
      ||||||| |||||||| || ||||||| ||||| ||||||||||||||| 
seq2  TAATCCC-AGATGTTT-GTTGAGGCAG-AAGAT-AGTTCAAGGTCATTT-  1039

seq1  AGACTACATAACG-AGTTT-GGGGGGCAGCCGGGACTACATGCAAACACT  1098
       |||||| ||||| ||||| ||||||||||| ||||| ||||||||||||
seq2  -GACTAC-TAACGAAGTTTGGGGGGGCAGCC-GGACTTCATGCAAACACT  1086

seq1  GTCACAAAGTCTTTTGTATTTAGGAGA-CTGGAGTTGAATGACC  1141
      ||| | |||| |||||||||||||||| |||||||   ||||||
seq2  GTCTC-AAGT-TTTTGTATTTAGGAGATCTGGAGT--GATGACC  1126