BAC Information

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BAC

Clone NameB6Ng01-087B08
Chromosome13 (Build37)
Map Location 108,094,551 - 108,284,698
singlet/doubletdoublet
Overlap geneLOC100040366, Apoo, AI197445
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350
Downstream geneLOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B08.bB6Ng01-087B08.g
ACCDH900309DH900310
length1,0771,168
definitionDH900309|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B08, 5' end.DH900310|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,283,621 - 108,284,698)(108,094,551 - 108,095,728)
sequence
gaattcaggcttgtatcttgaatgttaggattctgaaggagcctgtataa
aatgattgctcatgagattaacttaatttaccataaatcctgccctctct
ctctccatcttcctctctctcatcaagagcttcatgaaaagaggcaaaat
tgggtcagagttggagaaggctgagaatgaatagaaaaaccgataaaatt
aaaactttaaatgttttcacattctttcttcctcctcagtccataaactc
tccctctacacaaatgaagcaggtcaacagttcttacagcttcctctttg
aaatgaggtcaggatgccacactggactctgtctctctgtctccctctgt
ctctctctatttctctctctctctctctctctctctctctctctctctct
ttcccccctcccgtctttcctaaacttttctccgtagtgtagtaaacatg
gagacacagagaagtaggaaacactaaaaggaagaataggcaggagatag
tgcaggtgatgggcagtacggaaggagacagcggaaatccttggccatgc
aaagcctgagcttccgtccaggaaatcactggcaaaccgcgccaactccc
acgcgggagcacagcactgctgactcgcagtcatgagaacaagagggaca
aacccaacatgctggctgctgctgctgctcattcgctcttcacttccgtt
cacagagcatcctggcaggcatccactgtgccatatgctttcgggaagtc
tggatgctgaatgtggtggctgtggggaattgagccttattgcttcataa
gattcctggtggtagaactattctgaacaagaacacgtccgtccccatag
gtgtgctcccagaatcacagaataagaagggacttcggagagagcctcac
acagttgggcaatgggagcccagagaggcaaggaaggctccttgcccaaa
gtcttgtacatctgaatcttgcaactcctgactatttttgagtcttatgc
tcaggctaaaacttgtgactttaagggtgatgtcctcgggatgataatct
aggatgtttctgttggttttcttaccg
gaattccaatggtcgaaccttctttcttttctcactagataggatggaaa
catggtaaatcagcagataacacacttacaactggctggggtagacgtag
ccctgcaccttctgtgggtagtttcaagttagcttcttctaaaatgagtg
gtgaatttaaactgttattgtcttttcatgaattccttacagatagtctt
tatgatcatcaatcctgaaaaagcacctgaagttggttatatttcagaga
tcagaaaaaggaataaactctattagaagaaggagatatagtgacccgtg
aaaaagaacaggtcttgagaatagaagataatgttgacccatgaaagacc
catagatggtctagtcacctctgcaaaaggaacttttgtgcacagaacca
ccgtgtctgtgagtgatttctgaatcacaacaagaagtatgaattgtcca
ccatatttaattacattgatgcataaaaataagaagtgactttgttatca
ttatttcaaagtatgtcatccaaggtaaagaatggaatgctgagacaaaa
gtaaccaatgtcatatcaacatcatatttctaaccaaaacctgataaatt
atttgttaaattatttgttcctgctgtaggctgagaggagtgagcaagga
tgcagaaagaccagaccttcctatgatgcgcagcagactcaactaatgct
ataattcagtaaagctgagcagggaaactgtagatctaacttcattagac
ccttggctacaatgatgatgtcatgaaggttttgatttttggattgtggc
tttagccaggaccaaagactctgagcttgtttcactctctgtaggtcttc
aagcatactgaatgtgatcgatctcacaccacagcccttatagtttatcc
tcactgtctctacagccaagtgcagccattctctatgcttctgacttctt
ccagttagcttctctagtcatccaactataggtgttactttgactgcaga
tggcttgcaagcatccctttctcttgggacagagataatattgcattaac
cccccacccccaaacctgacacacgaatcccaattcttgcttctttagga
atacttcagatcactttcttcctatcagagtgcattagatgcgaagacat
taagttattgaaggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108283621_108284698
seq2: B6Ng01-087B08.b_47_1123 (reverse)

seq1  CGGTAAGAAAA-CAACAGAAACATCCTAGATTAATCATCACCGAGAACAT  49
      ||||||||||| |||||||||||||||||||| |||||| ||||| ||||
seq2  CGGTAAGAAAACCAACAGAAACATCCTAGATT-ATCATC-CCGAGGACAT  48

seq1  CACACTTAAAGTCACAAGTTTTAGCCTGGAGCATAAGACTCAAAAATAGT  99
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACCCTTAAAGTCACAAGTTTTAGCCT-GAGCATAAGACTCAAAAATAGT  97

seq1  CAGGAGTTGC-AGATTCAGATGTACAAGACTTTGGGCAAGGAGCCTTCCT  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTGCAAGATTCAGATGTACAAGACTTTGGGCAAGGAGCCTTCCT  147

seq1  TGCCTCTCTGGGCTCCCATTGCCCAACTGTGTGAGGCTCTCTCCGAAGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTGGGCTCCCATTGCCCAACTGTGTGAGGCTCTCTCCGAAGTC  197

seq1  CCTTCTTATTCTGTGATTCTTGGAGCACACCTATGGGGACGGACGTGTTC  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTCTTATTCTGTGATTCTGGGAGCACACCTATGGGGACGGACGTGTTC  247

seq1  TTGTTCAGAATAGTTCTACCACCAGGAATCTTATGAAGCAATAAGGCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGAATAGTTCTACCACCAGGAATCTTATGAAGCAATAAGGCTCA  297

seq1  ATTCCCCACAGCCACCACATTCAGCATCCAGACTTCCCGAAAGCATATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCACAGCCACCACATTCAGCATCCAGACTTCCCGAAAGCATATGG  347

seq1  CACAGTGGATGCCTGCCAGGATGCTCTGTGAACGGAAGTGAAGAGCGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGATGCCTGCCAGGATGCTCTGTGAACGGAAGTGAAGAGCGAAT  397

seq1  GAGCAGCAGCAGCAGCCAGCATGTTGGGTTTGTCCCTCTTGTTCTCATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGCAGCAGCCAGCATGTTGGGTTTGTCCCTCTTGTTCTCATGA  447

seq1  CTGCGAGTCAGCAGTGCTGTGCTCCCGCGTGGGAGTTGGCGCGGTTTGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGTCAGCAGTGCTGTGCTCCCGCGTGGGAGTTGGCGCGGTTTGCC  497

seq1  AGTGATTTCCTGGACGGAAGCTCAGGCTTTGCATGGCCAAGGATTTCCGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTCCTGGACGGAAGCTCAGGCTTTGCATGGCCAAGGATTTCCGC  547

seq1  TGTCTCCTTCCGTACTGCCCATCACCTGCACTATCTCCTGCCTATTCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTTCCGTACTGCCCATCACCTGCACTATCTCCTGCCTATTCTTC  597

seq1  CTTTTAGTGTTTCCTACTTCTCTGTGTCTCCATGTTTACTACACTACGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTGTTTCCTACTTCTCTGTGTCTCCATGTTTACTACACTACGGA  647

seq1  GAAAAGTTTAGGAAAGACGGGAGGGGGGAAAGAGAGAGAGAGAGAGAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTAGGAAAGACGGGAGGGGGGAAAGAGAGAGAGAGAGAGAGAG  697

seq1  AGAGAGAGAGAGAGAGAGAAATAGAGAGAGACAGAGGGAGACAGAGAGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAAATAGAGAGAGACAGAGGGAGACAGAGAGAC  747

seq1  AGAGTCCAGTGTGGCATCCTGACCTCATTTCAAAGAGGAAGCTGTAAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAGTGTGGCATCCTGACCTCATTTCAAAGAGGAAGCTGTAAGAA  797

seq1  CTGTTGACCTGCTTCATTTGTGTAGAGGGAGAGTTTATGGACTGAGGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACCTGCTTCATTTGTGTAGAGGGAGAGTTTATGGACTGAGGAGG  847

seq1  AAGAAAGAATGTGAAAACATTTAAAGTTTTAATTTTATCGGTTTTTCTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAATGTGAAAACATTTAAAGTTTTAATTTTATCGGTTTTTCTAT  897

seq1  TCATTCTCAGCCTTCTCCAACTCTGACCCAATTTTGCCTCTTTTCATGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCAGCCTTCTCCAACTCTGACCCAATTTTGCCTCTTTTCATGAA  947

seq1  GCTCTTGATGAGAGAGAGGAAGATGGAGAGAGAGAGGGCAGGATTTATGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGATGAGAGAGAGGAAGATGGAGAGAGAGAGGGCAGGATTTATGG  997

seq1  TAAATTAAGTTAATCTCATGAGCAATCATTTTATACAGGCTCCTTCAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAGTTAATCTCATGAGCAATCATTTTATACAGGCTCCTTCAGAA  1047

seq1  TCCTAACATTCAAGATACAAGCCTGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  TCCTAACATTCAAGATACAAGCCTGAATTC  1077

seq1: chr13_108094551_108095728
seq2: B6Ng01-087B08.g_70_1237

seq1  GAATTCCAATGGTCGAACCTTCTTTCTTTTCTCACTAGATAGGATGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGGTCGAACCTTCTTTCTTTTCTCACTAGATAGGATGGAAA  50

seq1  CATGGTAAATCAGCAGATAACACACTTACAACTGGCTGGGGTAGACGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAATCAGCAGATAACACACTTACAACTGGCTGGGGTAGACGTAG  100

seq1  CCCTGCACCTTCTGTGGGTAGTTTCAAGTTAGCTTCTTCTAAAATGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCACCTTCTGTGGGTAGTTTCAAGTTAGCTTCTTCTAAAATGAGTG  150

seq1  GTGAATTTAAACTGTTATTGTCTTTTCATGAATTCCTTACAGATAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTAAACTGTTATTGTCTTTTCATGAATTCCTTACAGATAGTCTT  200

seq1  TATGATCATCAATCCTGAAAAAGCACCTGAAGTTGGTTATATTTCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCATCAATCCTGAAAAAGCACCTGAAGTTGGTTATATTTCAGAGA  250

seq1  TCAGAAAAAGGAATAAACTCTATTAGAAGAAGGAGATATAGTGACCCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAAGGAATAAACTCTATTAGAAGAAGGAGATATAGTGACCCGTG  300

seq1  AAAAAGAACAGGTCTTGAGAATAGAAGATAATGTTGACCCATGAAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACAGGTCTTGAGAATAGAAGATAATGTTGACCCATGAAAGACC  350

seq1  CATAGATGGTCTAGTCACCTCTGCAAAAGGAACTTTTGTGCACAGAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGGTCTAGTCACCTCTGCAAAAGGAACTTTTGTGCACAGAACCA  400

seq1  CCGTGTCTGTGAGTGATTTCTGAATCACAACAAGAAGTATGAATTGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCTGTGAGTGATTTCTGAATCACAACAAGAAGTATGAATTGTCCA  450

seq1  CCATATTTAATTACATTGATGCATAAAAATAAGAAGTGACTTTGTTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAATTACATTGATGCATAAAAATAAGAAGTGACTTTGTTATCA  500

seq1  TTATTTCAAAGTATGTCATCCAAGGTAAAGAATGGAATGCTGAGACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAAAGTATGTCATCCAAGGTAAAGAATGGAATGCTGAGACAAAA  550

seq1  GTAACCAATGTCATATCAACATCATATTTCTAACCAAAACCTGATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAATGTCATATCAACATCATATTTCTAACCAAAACCTGATAAATT  600

seq1  ATTTGTTAAATTATTTGTTCCTGCTGTAGGCTGAGAGGAGTGAGCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAATTATTTGTTCCTGCTGTAGGCTGAGAGGAGTGAGCAAGGA  650

seq1  TGCAGAAAGACCAGACCTTCCTATGATGCGCAGCAGACTCAACTAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAGACCAGACCTTCCTATGATGCGCAGCAGACTCAACTAATGCT  700

seq1  ATAATTCAGTAAAGCTGAGCAGGGAAACTGTAGATCTAACTTCATTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGTAAAGCTGAGCAGGGAAACTGTAGATCTAACTTCATTAGAC  750

seq1  CCTTGGCTACAATGATGATGTCATGAAGGTTTTGATTTTTGGATTGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTACAATGATGATGTCATGAAGGTTTTGATTTTTGGATTGTGGC  800

seq1  TTTAGCCAGGACCAAAGACTCTGAGCTTG-TTCACTCTCTGTAGGTCTTC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTAGCCAGGACCAAAGACTCTGAGCTTGTTTCACTCTCTGTAGGTCTTC  850

seq1  AAGCATACTGAATGTGATCGATCTCACACCACAGCCCTCATAGTTTATCC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGCATACTGAATGTGATCGATCTCACACCACAGCCCTTATAGTTTATCC  900

seq1  TCACTGTCTCTACAGCCAAGTGCAGCCATTCTCTATGCTTCTGACTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTCTACAGCCAAGTGCAGCCATTCTCTATGCTTCTGACTTCTT  950

seq1  CCAGTTAGC-TCTCTAGTCCATCCAACTATAGGTGTTACCTTGACTGCAG  998
      ||||||||| |||||||| |||||||||||||||||||| ||||||||||
seq2  CCAGTTAGCTTCTCTAGT-CATCCAACTATAGGTGTTACTTTGACTGCAG  999

seq1  ATGGCTTGCAAGCATCCCATTTCCCTT-GGACAGGAGATTAATATTGCAT  1047
      |||||||||||||||||| |||| ||| ||||| |||| |||||||||||
seq2  ATGGCTTGCAAGCATCCC-TTTCTCTTGGGACA-GAGA-TAATATTGCAT  1046

seq1  TAACCCCCCACCCCCAAACCTGACAACACGAATCCCCAAATCTTGCCTC-  1096
      |||||||||||||||||||||||| |||||||| ||||| |||||| || 
seq2  TAACCCCCCACCCCCAAACCTGAC-ACACGAAT-CCCAATTCTTGCTTCT  1094

seq1  TTAGGATTACTTCCAGAACCACTTTCCTATCTATCAGAGTGCAATTAGGA  1146
      |||||| ||||| ||| | |||||| ||  |||||||||||| |||| ||
seq2  TTAGGAATACTT-CAG-ATCACTTT-CTTCCTATCAGAGTGC-ATTA-GA  1139

seq1  TGCAGAAGACATAAAGTAATTTGAAAGGCAAA  1178
      ||| |||||||| |||| |||   ||||||||
seq2  TGC-GAAGACATTAAGTTATT--GAAGGCAAA  1168