BAC Information

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BAC

Clone NameB6Ng01-087O20
Chromosome13 (Build37)
Map Location 62,222,024 - 62,222,985
singlet/doubletsinglet
Overlap genenone
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444
Downstream geneEG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087O20.bB6Ng01-087O20.g
ACCDH900920DH900921
length1,200959
definitionDH900920|Mus musculus domesticus DNA, BAC clone: B6Ng01-087O20, 5' end.DH900921|Mus musculus domesticus DNA, BAC clone: B6Ng01-087O20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgatctacttagacttgagctttgtacaaggagataaaaatg
gatcaattgcattcttctacacgttaaccaccctttgagccagcactatt
tgttgaaaatgctggcttttttccattggatgattttagctcctttgtca
aagatcaagtgaccataggtgtgtgggttcatttctgggtcttcaattct
attccattgatctaccggtctttcactgtacccgtaccatgcagttttta
tcataattgctctgtagtacagcttgaggtcaggcatggtgattccacca
gaggttcttttattgttgagaatagtttttgatatcctaggttttttgtt
attcccgatgaatgtgcaaattgccctttctaactctgtgaaaattgagt
tgggattttgatgggaattgtttgcattgggtctgtagattgctttcagc
aggatagccatttttactagattactcctgccaatccacgagcatgggag
atctttccatcttctaagatcttctttgatttctttcttcagagtcttga
agttctttttttttttaagatttatatatttattatatgtaaatacagtg
tagctgtcctcagatactccagaagagggcatcagatttcgctaaggata
gttgtgagcaactatggttgctgggatttgaactcgggaccttcggaaga
gcagttggcgctcctaaccactgagtcatctcgccagccctgagtcttga
agttcttatcatatagatctttcacttgcttagttagagtcataccaagt
tattttttattatttgtgattattttgaaatgtgttctttccctaatttc
cttctctgcctgtttatcctttgtgtagtgaaaggccagtgatttgtttg
agttaatttatatccagctactttactcaagttgtttatcagttgaagga
gtctctgatggaatttttggggtcactatgtatactatcatatcatcttc
aagagcgaaattttaacttcttcctttcattggatcccatgatcaacttt
tgtagtctgatgcatgcatagacttgagtctatattggatatgtggggaa
cagaataggacagccttgctaggtctgaacttcgggatgactcacttctc
gatagtgtaattggactgattgcctcaatgccttgctaactaaattcggc

gaattcagaaatgaatgttttacaggcattaaggaaacagaataggatcc
aattcagctagtcaatcttaatacatgcatggtactcttctctcattaca
aaaagcataaattacatcagaggtacacctgacatgcattgacaggtgtg
catgtgggctcctactgctgccaaatgagtccagaaaccgaatagattgc
attagaaaattttcaataaagtgaaatttttcgatttttcttttctcttt
cttttaagattttttttttttgagacagaatgtcactataaaacatgtct
aagaactcactatgtacatgaccctggcctaaaactcagagacaggccta
ccaccatctctaatgtaataggtttacaggtatgcacctctaagatgagc
tgagatgttttttcaatgacttacatttgaaccaaacaatgaatgacaag
gtaaggactaaagagtaaacctcatggttttgatgttcagtaataagtgc
taaaatttaatagtaataatttaaactggcaaatcatttcatatgttttc
aaaactgggtttgttctttttttgctttgttaatttcttccatggaaaat
tgtttcaactgtgtttgtggatatacacctgtgccatgggtgtaggtagc
agtgagaaagcaccttacagctgtctattatctacttccaatatgtgagt
tctagaggtacaactcaaaaaggtttggctgcaactcacaccgttgttcc
ttattttgtttaacatgtttatatactgctgatgtgtgacatgcataagc
cagaacctaagtatagaaataagcagctgggagtggtgcacgcctttaat
cccagcacttgggaggcagaggcaggcagatttctgagttcgagccagcc
tggtctacaaaatgagttccagacagccaggcctacacagagaaactctg
tcttgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62222024_62222985
seq2: B6Ng01-087O20.g_69_1027 (reverse)

seq1  TTTTCAAGACAGAGTTTCTCTGTGTAGGCCTGGCTGTCCTGGAACTCATT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTCAAGACAGAGTTTCTCTGTGTAGGCCTGGCTGT-CTGGAACTCATT  49

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCC  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGG-CTCGAACTCAGAAATCTGCCTGCCTCTGCCTCC  98

seq1  CAAGTGCTGGGATTAAAGGCGTGCACCACCTCCCAGCTGCTTATTTCTAT  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAGTGCTGGGATTAAAGGCGTGCACCA-CTCCCAGCTGCTTATTTCTAT  147

seq1  ACTTAGGTTCTGGCTTATGCATGTCACACATCAGCAGTATATAAACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTTCTGGCTTATGCATGTCACACATCAGCAGTATATAAACATGT  197

seq1  TAAACAAAATAAGGAACAACGGTGTGAGTTGCAGCCAAACCTTTTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAATAAGGAACAACGGTGTGAGTTGCAGCCAAACCTTTTTGAGT  247

seq1  TGTACCTCTAGAACTCACATATTGGAAGTAGATAATAGACAGCTGTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTCTAGAACTCACATATTGGAAGTAGATAATAGACAGCTGTAAGG  297

seq1  TGCTTTCTCACTGCTACCTACACCCATGGCACAGGTGTATATCCACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTCACTGCTACCTACACCCATGGCACAGGTGTATATCCACAAAC  347

seq1  ACAGTTGAAACAATTTTCCATGGAAGAAATTAACAAAGCAAAAAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAAACAATTTTCCATGGAAGAAATTAACAAAGCAAAAAAAGAAC  397

seq1  AAACCCAGTTTTGAAAACATATGAAATGATTTGCCAGTTTAAATTATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGTTTTGAAAACATATGAAATGATTTGCCAGTTTAAATTATTAC  447

seq1  TATTAAATTTTAGCACTTATTACTGAACATCAAAACCATGAGGTTTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTTTAGCACTTATTACTGAACATCAAAACCATGAGGTTTACTC  497

seq1  TTTAGTCCTTACCTTGTCATTCATTGTTTGGTTCAAATGTAAGTCATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCCTTACCTTGTCATTCATTGTTTGGTTCAAATGTAAGTCATTGA  547

seq1  AAAAACATCTCAGCTCATCTTAGAGGTGCATACCTGTAAACCTATTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCTCAGCTCATCTTAGAGGTGCATACCTGTAAACCTATTACAT  597

seq1  TAGAGATGGTGGTAGGCCTGTCTCTGAGTTTTAGGCCAGGGTCATGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGGTGGTAGGCCTGTCTCTGAGTTTTAGGCCAGGGTCATGTACA  647

seq1  TAGTGAGTTCTTAGACATGTTTTATAGTGACATTCTGTCTCAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGTTCTTAGACATGTTTTATAGTGACATTCTGTCTCAAAAAAAAA  697

seq1  AAATCTTAAAAGAAAGAGAAAAGAAAAATCGAAAAATTTCACTTTATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAAAAGAAAGAGAAAAGAAAAATCGAAAAATTTCACTTTATTGA  747

seq1  AAATTTTCTAATGCAATCTATTCGGTTTCTGGACTCATTTGGCAGCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTAATGCAATCTATTCGGTTTCTGGACTCATTTGGCAGCAGTA  797

seq1  GGAGCCCACATGCACACCTGTCAATGCATGTCAGGTGTACCTCTGATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCACATGCACACCTGTCAATGCATGTCAGGTGTACCTCTGATGTA  847

seq1  ATTTATGCTTTTTGTAATGAGAGAAGAGTACCATGCATGTATTAAGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTTTTTGTAATGAGAGAAGAGTACCATGCATGTATTAAGATTG  897

seq1  ACTAGCTGAATTGGATCCTATTCTGTTTCCTTAATGCCTGTAAAACATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGAATTGGATCCTATTCTGTTTCCTTAATGCCTGTAAAACATTC  947

seq1  ATTTCTGAATTC  962
      ||||||||||||
seq2  ATTTCTGAATTC  959