BAC Information

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BAC

Clone NameB6Ng01-088E05
Chromosome13 (Build37)
Map Location 75,878,938 - 76,012,786
singlet/doubletdoublet
Overlap geneEll2, LOC666786, Glrx, Rhobtb3
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneLOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E05.bB6Ng01-088E05.g
ACCDH901168DH901169
length1,2061,089
definitionDH901168|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E05, 5' end.DH901169|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,878,938 - 75,880,154)(76,011,678 - 76,012,786)
sequence
gaattctaatgcttagatgcttacagcaagtttctcctagacctaagctt
agtgcacagtctgcacactgcacactgcacactgcagagctgagtggtaa
gaagaccagacagatgatactgagagacatgctggcttgctgagcttctg
cagaggtcgaagagaaagaaagacttttattttaggtcatacgaattgga
aaatgactttttggttcaaaagatctacagccaagagagtcgttttgttt
aacctggcatttcccaaacttacttgatggtagaatccccattttaaata
aaacttttcagcatactttggaaatactgttggaaagaaagcagacacca
gttctagttctgcctgagacattaatcaacatttttactcactcagcgaa
tacatatcgagtgactactttgtgctctgcaccattcaagatactggcag
tacattcacaagcgcacaaaggcgtctgtctttgcacagcttatattcta
gagggggaagaaataccataaacataatatgttagtattacaaggtaatg
agtgtttcagacagccatggagcagagaaagtggtctgagagtatagggt
agcaattttaagcatgaatataaccttggacagcttactgggcctctttg
tctctaatttataaaacgaagaatttgaaaaatgatctgggctcccctgg
tcctgtggttcaactgaacaaccccaagaacgtccatatcaaacttcgtt
actgctggctcataaatgtctgataaagcctttcagtcactgtaggagaa
aaagttaggtattaatgcttataattaccgcactgccatttaagtctttt
gtgatcgccacaaagcaaaacatttaaataaataaagccttactagattt
ctttttaatctagcatatgctttgatcctatatggggctcaggtaccaaa
cactttttaagcagataccagtgtgcatgagtttcagcagtgtatgcttg
tacttctgccctagatcttaagatagccggctgtgactgatgatgaaatg
actttcagacgtacttattgcacatgcctgagcctgtatctggatattag
agctttgactaagaccagtggcatacagcgtcatgttaattataatgtct
tgaaggtttcttgactttcctttttgtagccttttatccgaaacagactg
tactgg
gaattctgagttctaggccagtctcagcttcagaacaagcaaagggtgag
atttcctggaactgcataataggaaggaaaacaaggtggggtgtttgtca
gagtaggtgactcatgaaaaggacaggaaagagtgccagtcaaggacaaa
gaactctgtatggggatggctgagggtttggagagtgctacagagggatt
aggggtaaacaggataagtggagggaaagagaatggagcagcagactcca
gagttctgggctcccctccatgtctgtataatgtcttagtggtgacgcac
agaacctgaaaaccatcttggcctctttctgctctacacactgtcacaaa
aacatgggatccagagtctatcaaaagcattggcttttgatagatatatt
cagcccgttaacaaaactgtgcacctgtcctctagctcaagcactcagtt
gctaagatagtagtgtaatataatcaaagcaaagcaaaggtcagataaca
ttcactctgcattttgcaaggaaaaaaaaaaaaaagactgggcttatcat
aaagataaggtgtgctctgcttgcaacccgtacaagcagtgcactgacga
gaacaaggctgttctcttaagacattaacaacttcattctggctctatag
ctactacaactgtgacacattaggccacttccattgtaaaagaatgaaat
tattttctaaccactcttagatctccatgaggtgtaattacagcctccgg
agaaagacagtacatacatcatttctgttatttgtgtcaatagctattgc
ttatggaattgcctataaaatgtgcaaatcagaggtgcaggacatcctct
cagagctgtggaagacctggatgctgtggcaggggtcagtaccttacttg
ggtgggaactgaaagaatctgaaagtcacatctttagtacctatggtatg
attcttcttagcagagaatggtcttctggatacagattatgaatatgcta
attctgtattatgactatgcatcgagaagtcaccatttagacaacttttt
atgtagccctccttaaatctcgaagaagtctgggtctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_75878938_75880154
seq2: B6Ng01-088E05.b_45_1250

seq1  GAATTCTAATGCTTAGATGCTTACAGCAAGTTTCTCCTAGACCTAAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGCTTAGATGCTTACAGCAAGTTTCTCCTAGACCTAAGCTT  50

seq1  AGTGCACAGTCTGCACACTGCACACTGCACACTGCAGAGCTGAGTGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAGTCTGCACACTGCACACTGCACACTGCAGAGCTGAGTGGTAA  100

seq1  GAAGACCAGACAGATGATACTGAGAGACATGCTGGCTTGCTGAGCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGACAGATGATACTGAGAGACATGCTGGCTTGCTGAGCTTCTG  150

seq1  CAGAGGTCGAAGAGAAAGAAAGACTTTTATTTTAGGTCATACGAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCGAAGAGAAAGAAAGACTTTTATTTTAGGTCATACGAATTGGA  200

seq1  AAATGACTTTTTGGTTCAAAAGATCTACAGCCAAGAGAGTCGTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTTTTGGTTCAAAAGATCTACAGCCAAGAGAGTCGTTTTGTTT  250

seq1  AACCTGGCATTTCCCAAACTTACTTGATGGTAGAATCCCCATTTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCATTTCCCAAACTTACTTGATGGTAGAATCCCCATTTTAAATA  300

seq1  AAACTTTTCAGCATACTTTGGAAATACTGTTGGAAAGAAAGCAGACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCAGCATACTTTGGAAATACTGTTGGAAAGAAAGCAGACACCA  350

seq1  GTTCTAGTTCTGCCTGAGACATTAATCAACATTTTTACTCACTCAGCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTTCTGCCTGAGACATTAATCAACATTTTTACTCACTCAGCGAA  400

seq1  TACATATCGAGTGACTACTTTGTGCTCTGCACCATTCAAGATACTGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCGAGTGACTACTTTGTGCTCTGCACCATTCAAGATACTGGCAG  450

seq1  TACATTCACAAGCGCACAAAGGCGTCTGTCTTTGCACAGCTTATATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCACAAGCGCACAAAGGCGTCTGTCTTTGCACAGCTTATATTCTA  500

seq1  GAGGGGGAAGAAATACCATAAACATAATATGTTAGTATTACAAGGTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAAGAAATACCATAAACATAATATGTTAGTATTACAAGGTAATG  550

seq1  AGTGTTTCAGACAGCCATGGAGCAGAGAAAGTGGTCTGAGAGTATAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCAGACAGCCATGGAGCAGAGAAAGTGGTCTGAGAGTATAGGGT  600

seq1  AGCAATTTTAAGCATGAATATAACCTTGGACAGCTTACTGGGCCTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTAAGCATGAATATAACCTTGGACAGCTTACTGGGCCTCTTTG  650

seq1  TCTCTAATTTATAAAACGAAGAATTTGAAAAATGATCTGGGCTCCCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATTTATAAAACGAAGAATTTGAAAAATGATCTGGGCTCCCCTGG  700

seq1  TCCTGTGGTTCAACTGAACAACCCCAAGAACGTCCATATCAAACTTCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGGTTCAACTGAACAACCCCAAGAACGTCCATATCAAACTTCGTT  750

seq1  ACTGCTGGCTCATAAATGTCTGATAAAGCCTTTCAGTCACTGTAGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGCTCATAAATGTCTGATAAAGCCTTTCAGTCACTGTAGGAGAA  800

seq1  AAAGTTAGGTATTAATGCTTATAATTACCGCACTGCCATTTAAGTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGGTATTAATGCTTATAATTACCGCACTGCCATTTAAGTCTTTT  850

seq1  GTGATCGCCACAAAGCAAAACATTTAAATAAATAAAGCCTTACTAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCGCCACAAAGCAAAACATTTAAATAAATAAAGCCTTACTAGATTT  900

seq1  CTTTTTAATCTAGCATATGCTTTGATCCTATATGGGGCTCAGGTACCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATCTAGCATATGCTTTGATCCTATATGGGGCTCAGGTACCAAA  950

seq1  CAC-TTTTAAGCAGATACCAGTGTGCATGAGTTTCAGCAGTGTATGCTTG  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTAAGCAGATACCAGTGTGCATGAGTTTCAGCAGTGTATGCTTG  1000

seq1  TACTTCTGCCCTAGATCCTTAAGATAGCCGGCCTGTGACTGATGATGAAA  1049
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TACTTCTGCCCTAGAT-CTTAAGATAGCCGG-CTGTGACTGATGATGAAA  1048

seq1  TGACCTTTCAGACAGTACTTTATTGCCACATGCCTGAGCCTGTATCTGAA  1099
      ||| ||||||||| |||| |||||| |||||||||||||||||||||| |
seq2  TGA-CTTTCAGAC-GTAC-TTATTG-CACATGCCTGAGCCTGTATCTGGA  1094

seq1  TAATTAGAAGCTTTGACTTAAGACACAGTGGCATACAGCGCCCATGTTAA  1149
      | ||||| ||||||||| |||||| |||||||||||||||  ||||||||
seq2  T-ATTAG-AGCTTTGAC-TAAGAC-CAGTGGCATACAGCG-TCATGTTAA  1139

seq1  TTATAAATGTC-TGAAAGTTTCCTGAAACCTTT--TCTTTGTAGCTTTTT  1196
      |||| |||||| |||| ||||| |||   ||||  | |||||||| ||||
seq2  TTAT-AATGTCTTGAAGGTTTCTTGA---CTTTCCTTTTTGTAGCCTTTT  1185

seq1  ATCGAAAACAGACTGCACTGG  1217
      |||  |||||||||| |||||
seq2  ATCCGAAACAGACTGTACTGG  1206

seq1: chr13_76011678_76012786
seq2: B6Ng01-088E05.g_67_1155 (reverse)

seq1  GTAGACCCAGACTTTCCTCTGGAGATTTTAAATGGTAGTGCTACATAAAA  50
      ||||||||||||||  || | ||||||| |    | || ||||||| |||
seq2  GTAGACCCAGACTT--CT-TCGAGATTTAA----GGAGGGCTACAT-AAA  42

seq1  AAGTTGTCTAAATGGTGACTTCTCTGATGCCATAGTTCATAATTACAGAA  100
      |||||||||||||||||||||||| |||| ||||| |||||| |||||||
seq2  AAGTTGTCTAAATGGTGACTTCTC-GATG-CATAG-TCATAA-TACAGAA  88

seq1  TTAGCATATTTCATAATTCTGTTATCCAGAGGACCATTTCCTCTGCTAAG  150
      |||||||| ||||||| |||| |||||||| |||||||  ||||||||||
seq2  TTAGCATA-TTCATAA-TCTG-TATCCAGAAGACCATT--CTCTGCTAAG  133

seq1  AAGAATCATACCATAGGTACTAAAGATGTGACCTTTCAGATTTCTTTCAG  200
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  AAGAATCATACCATAGGTACTAAAGATGTGA-CTTTCAGA-TTCTTTCAG  181

seq1  TTCCCACCCAAGTAAGGTACTGACCCCTGCCACAGCATCCAGGTCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCCAAGTAAGGTACTGACCCCTGCCACAGCATCCAGGTCTTCCA  231

seq1  CAGCTCCTGAGAGGATGTCCTGCACCTCTGATTTGCACATTTTATAGGCA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCT-CTGAGAGGATGTCCTGCACCTCTGATTTGCACATTTTATAGGCA  280

seq1  ATTCCATAAGCAATAGCTATTGACACAAATAACAGAAATGATGTATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATAAGCAATAGCTATTGACACAAATAACAGAAATGATGTATGTAC  330

seq1  TGTCTTTCTCCGGAGGCTGTAATTACACCTCATGGAGATCTAAGAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTCCGGAGGCTGTAATTACACCTCATGGAGATCTAAGAGTGGT  380

seq1  TAGAAAATAATTTCATTCTTTTACAATGGAAGTGGCCTAATGTGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATAATTTCATTCTTTTACAATGGAAGTGGCCTAATGTGTCACAG  430

seq1  TTGTAGTAGCTATAGAGCCAGAATGAAGTTGTTAATGTCTTAAGAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTAGCTATAGAGCCAGAATGAAGTTGTTAATGTCTTAAGAGAACA  480

seq1  GCCTTGTTCTCGTCAGTGCACTGCTTGTACGGGTTGCAAGCAGAGCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCTCGTCAGTGCACTGCTTGTACGGGTTGCAAGCAGAGCACAC  530

seq1  CTTATCTTTATGATAAGCCCAGTCTTTTTTTTTTTTTTCCTTGCAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTTATGATAAGCCCAGTCTTTTTTTTTTTTTTCCTTGCAAAATG  580

seq1  CAGAGTGAATGTTATCTGACCTTTGCTTTGCTTTGATTATATTACACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAATGTTATCTGACCTTTGCTTTGCTTTGATTATATTACACTAC  630

seq1  TATCTTAGCAACTGAGTGCTTGAGCTAGAGGACAGGTGCACAGTTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGCAACTGAGTGCTTGAGCTAGAGGACAGGTGCACAGTTTTGTT  680

seq1  AACGGGCTGAATATATCTATCAAAAGCCAATGCTTTTGATAGACTCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGCTGAATATATCTATCAAAAGCCAATGCTTTTGATAGACTCTGGA  730

seq1  TCCCATGTTTTTGTGACAGTGTGTAGAGCAGAAAGAGGCCAAGATGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTTTTTGTGACAGTGTGTAGAGCAGAAAGAGGCCAAGATGGTTT  780

seq1  TCAGGTTCTGTGCGTCACCACTAAGACATTATACAGACATGGAGGGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCTGTGCGTCACCACTAAGACATTATACAGACATGGAGGGGAGC  830

seq1  CCAGAACTCTGGAGTCTGCTGCTCCATTCTCTTTCCCTCCACTTATCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTCTGGAGTCTGCTGCTCCATTCTCTTTCCCTCCACTTATCCTG  880

seq1  TTTACCCCTAATCCCTCTGTAGCACTCTCCAAACCCTCAGCCATCCCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCTAATCCCTCTGTAGCACTCTCCAAACCCTCAGCCATCCCCAT  930

seq1  ACAGAGTTCTTTGTCCTTGACTGGCACTCTTTCCTGTCCTTTTCATGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTCTTTGTCCTTGACTGGCACTCTTTCCTGTCCTTTTCATGAGT  980

seq1  CACCTACTCTGACAAACACCCCACCTTGTTTTCCTTCCTATTATGCAGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACTCTGACAAACACCCCACCTTGTTTTCCTTCCTATTATGCAGTT  1030

seq1  CCAGGAAATCTCACCCTTTGCTTGTTCTGAAGCTGAGACTGGCCTAGAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATCTCACCCTTTGCTTGTTCTGAAGCTGAGACTGGCCTAGAAC  1080

seq1  TCAGAATTC  1109
      |||||||||
seq2  TCAGAATTC  1089