BAC Information

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BAC

Clone NameB6Ng01-089E06
Chromosome13 (Build37)
Map Location 32,943,386 - 33,091,723
singlet/doubletdoublet
Overlap geneSerpinb1-ps1, Serpinb1c, Serpinb6b
Upstream geneGmds, LOC666212, Wrnip1, Serpinb1a
Downstream geneSerpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E06.bB6Ng01-089E06.g
ACCDH901887DH901888
length1,1641,091
definitionDH901887|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E06, 5' end.DH901888|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,090,524 - 33,091,723)(32,943,386 - 32,944,489)
sequence
gaattcatgatatgagattacagaaaacaaaagacttgagttgatagagc
taagcagtcgagatgtgatcctacctatcattgtcccattgctgtttgac
tccattctgtcctgcatggtggtcagagaaaccagaaatctctctctgga
acacaatttttctctggaaggctctgggattttacatccatcagcatgat
gttcctagataaatggaaattcactggggaacactgtttaaatagttttt
agtcaaatgaagtacaaatgtccctttagggtatctttgtccaacagtct
ggaaacagtatctacttgcttctaacactatagccttagggtataatagg
cctttgtctgaacaaatgccataaaaggaatacaagtggaaaccaagaat
aaaactcatccagttactgtcaggagaccaggaatcagaaacatttgtct
ataacttcttggctttggccacttgggtaacagctttcctgaccaatacc
ttcttggtttgagatagggtgtcaccttgaagcctaagttggctttaaca
tatgacgctcctgcttcaggttcttaaggttctaccatggtccaagatca
aactttatgagctgtctcactgcccctctacattcagtttttaacctaat
agtattataaaacatagattgctattataactgctactgaaatctgataa
accataaacacatgatgatgagaacacaaatcacacaatccagcaacact
tctaaaccatgtaacaggctgaaatactcaacatgtcatccagtcttagg
gaagaatggtcatatgggagagtatggagcacaaaaaagcccttgtggaa
tttgaatctgtagaaagattttgcttttcttttcctaaagacatttcacc
cagagctgttctaacagacagtacacccttttctagttactaaaaacctt
tccctaaatggactggggcttagagaatagcacacagccattccatgtct
agatacccactgatttaccaaagaacagaaactgcaattataattcaaaa
tgaaaacattgataatgaaagtagacttaatgggagttttaattaaattt
tattatattttcaatttatagcctcccaaagaagtatttaagtcgaaaaa
taagaacccacaac
gaattccactgaaacgctgtaaaatcaaaaggaatcctttctgtgcggta
tgtaggtagggatggagaaatatctttggggtcctttggataaggtccca
gattgccagttacaagcaataggtgatccttgtcttctctgcctttcagg
tgccaaggctagctcagggaccacaccaggctggagaagccctcaaccca
caattccccactattagactaaaagtttggacaaatcccctcactatgca
acttaaattagaattgactagcccaggccattgttaacttgatgggctca
gctttattctccttgaagtgtttggaactgtaaattcacagaacttttag
tgcttcttgtctttcttcagaggacaaaggaagaatcctactgtaggtga
gggtcacaacacatggattagtgtttgttagactcgggaactaaaagagg
agaaaggaagatggggaggtgggtcagcacgtctcttgagcactcccgtg
ttggatataatgcctattgtgaggtatcagaagatagaaacttcgtgtgt
ggtgtttgggaggtgaggactttgagaagtgattaagattacacagggtt
ctcagggtggggacgcctgactgaattccagaatatcatcttcatgacca
ctaggtggcgagcacgccccagctcttaaggactatgactccaagctttt
aataagagaaggagagatgagaagatcagaagagatagatctgcgctcct
tttttcccccctatgataccttgatgccttacactttctgggactttgtc
tagatgaaggctagttcagatgctgagtcttgaacatggagaatcataat
tatcaagccacaaatgttttatatacaacataatggacatagtccttttt
cacatacaaatatattcatccatgtagctcacgttattctagtattacca
gaatcagaaatgaaattcaaatatcccagtgagccggtggagtcaaaagt
tagtttcttctgaaataaatgggaccagctaaaaacagaattcttttaaa
aaaatcagtgaccaggaaaaatggtagttcctcagaacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_33090524_33091723
seq2: B6Ng01-089E06.b_35_1208 (reverse)

seq1  GTTGT--GTTCTTATTTTTTCTGAACTTAAATAACTTCTTTTGGGAAGGT  48
      |||||  |||||||||||   |  |||||||| ||||||||  || ||| 
seq2  GTTGTGGGTTCTTATTTT---TCGACTTAAAT-ACTTCTTT--GGGAGGC  44

seq1  TCATAAATTTGAAAATAATAAATAAAATTTAAATTAAAAAATTCCCATTA  98
      | ||||| |||||||||   |||||||||||| |   |||| ||||||||
seq2  T-ATAAA-TTGAAAATA--TAATAAAATTTAATT---AAAACTCCCATTA  87

seq1  GTGCTTACTTTCATTAATCAATGTTTTTCATTTTGAATTATAATTTGCAG  148
        |  |||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  -AGTCTACTTTCATT-ATCAATG-TTTTCATTTTGAATTATAA-TTGCAG  133

seq1  TTTTCTGGTTCTTTTGGTAAAATCAGTGGGTATCCTTAAGACATGGAAAT  198
       ||||| |||| |||||| |||||||||||||||    |||||||| |||
seq2  -TTTCT-GTTC-TTTGGT-AAATCAGTGGGTATC---TAGACATGG-AAT  175

seq1  GGCTGTGTGCTTATTCTCTAAGCCCCAGTCCATTTAGGGAAAGGTTTTTT  248
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GGCTGTGTGC-TATTCTCTAAGCCCCAGTCCATTTAGGGAAAGG-TTTTT  223

seq1  AGTAACTAGAAAAGGGTGTACTGTCTGTTAGAACAGCTCTGGGTGAAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTAGAAAAGGGTGTACTGTCTGTTAGAACAGCTCTGGGTGAAATG  273

seq1  TC-TTAGGAAAAGAAAAGCAAAATCTTTCTACAGATTC-AATTCCACAA-  345
      || ||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  TCTTTAGGAAAAGAAAAGCAAAATCTTTCTACAGATTCAAATTCCACAAG  323

seq1  GGCTTTTTTGTGCTCCATACTCTCCCATATGACCATTCTTCCCTAAGACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTGTGCTCCATACTCTCCCATATGACCATTCTTCCCTAAGACT  373

seq1  GGATGACATGTTGAGTATTTCAGCCTGTTACATGGTTTAGAAGTGTTGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACATGTTGAGTATTTCAGCCTGTTACATGGTTTAGAAGTGTTGCT  423

seq1  GGATTGTGTGATTTGTGTTCTCATCATCATGTGTTTATGGTTTATCAGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGTGATTTGTGTTCTCATCATCATGTGTTTATGGTTTATCAGAT  473

seq1  TTCAGTAGCAGTTATAATAGCAATCTATGTTTTATAATACTATTAGGTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGCAGTTATAATAGCAATCTATGTTTTATAATACTATTAGGTTA  523

seq1  AAAACTGAATGTAGAGGGGCAGTGAGACAGCTCATAAAGTTTGATCTTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATGTAGAGGGGCAGTGAGACAGCTCATAAAGTTTGATCTTGG  573

seq1  ACCATGGTAGAACCTTAAGAACCTGAAGCAGGAGCGTCATATGTTAAAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTAGAACCTTAAGAACCTGAAGCAGGAGCGTCATATGTTAAAGC  623

seq1  CAACTTAGGCTTCAAGGTGACACCCTATCTCAAACCAAGAAGGTATTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAGGCTTCAAGGTGACACCCTATCTCAAACCAAGAAGGTATTGGT  673

seq1  CAGGAAAGCTGTTACCCAAGTGGCCAAAGCCAAGAAGTTATAGACAAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGCTGTTACCCAAGTGGCCAAAGCCAAGAAGTTATAGACAAATG  723

seq1  TTTCTGATTCCTGGTCTCCTGACAGTAACTGGATGAGTTTTATTCTTGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTCCTGGTCTCCTGACAGTAACTGGATGAGTTTTATTCTTGGT  773

seq1  TTCCACTTGTATTCCTTTTATGGCATTTGTTCAGACAAAGGCCTATTATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTGTATTCCTTTTATGGCATTTGTTCAGACAAAGGCCTATTATA  823

seq1  CCCTAAGGCTATAGTGTTAGAAGCAAGTAGATACTGTTTCCAGACTGTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGCTATAGTGTTAGAAGCAAGTAGATACTGTTTCCAGACTGTTG  873

seq1  GACAAAGATACCCTAAAGGGACATTTGTACTTCATTTGACTAAAAACTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGATACCCTAAAGGGACATTTGTACTTCATTTGACTAAAAACTAT  923

seq1  TTAAACAGTGTTCCCCAGTGAATTTCCATTTATCTAGGAACATCATGCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGTGTTCCCCAGTGAATTTCCATTTATCTAGGAACATCATGCTG  973

seq1  ATGGATGTAAAATCCCAGAGCCTTCCAGAGAAAAATTGTGTTCCAGAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTAAAATCCCAGAGCCTTCCAGAGAAAAATTGTGTTCCAGAGAG  1023

seq1  AGATTTCTGGTTTCTCTGACCACCATGCAGGACAGAATGGAGTCAAACAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGGTTTCTCTGACCACCATGCAGGACAGAATGGAGTCAAACAG  1073

seq1  CAATGGGACAATGATAGGTAGGATCACATCTCGACTGCTTAGCTCTATCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGACAATGATAGGTAGGATCACATCTCGACTGCTTAGCTCTATCA  1123

seq1  ACTCAAGTCTTTTGTTTTCTGTAATCTCATATCATGAATTCCACTTATGG  1195
      |||||||||||||||||||||||||||||||||||||||||| |    ||
seq2  ACTCAAGTCTTTTGTTTTCTGTAATCTCATATCATGAATTCCGC----GG  1169

seq1  ACCTC  1200
      |||||
seq2  ACCTC  1174

seq1: chr13_32943386_32944489
seq2: B6Ng01-089E06.g_68_1158

seq1  GAATTCCACTGAAACGCTGTAAAATCAAAAGGAATCCTTTCTGTGCGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAAACGCTGTAAAATCAAAAGGAATCCTTTCTGTGCGGTA  50

seq1  TGTAGGTAGGGATGGAGAAATATCTTTGGGGTCCTTTGGATAAGGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAGGGATGGAGAAATATCTTTGGGGTCCTTTGGATAAGGTCCCA  100

seq1  GATTGCCAGTTACAAGCAATAGGTGATCCTTGTCTTCTCTGCCTTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGTTACAAGCAATAGGTGATCCTTGTCTTCTCTGCCTTTCAGG  150

seq1  TGCCAAGGCTAGCTCAGGGACCACACCAGGCTGGAGAAGCCCTCAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGCTAGCTCAGGGACCACACCAGGCTGGAGAAGCCCTCAACCCA  200

seq1  CAATTCCCCACTATTAGACTAAAAGTTTGGACAAATCCCCTCACTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCCACTATTAGACTAAAAGTTTGGACAAATCCCCTCACTATGCA  250

seq1  ACTTAAATTAGAATTGACTAGCCCAGGCCATTGTTAACTTGATGGGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTAGAATTGACTAGCCCAGGCCATTGTTAACTTGATGGGCTCA  300

seq1  GCTTTATTCTCCTTGAAGTGTTTGGAACTGTAAATTCACAGAACTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTCTCCTTGAAGTGTTTGGAACTGTAAATTCACAGAACTTTTAG  350

seq1  TGCTTCTTGTCTTTCTTCAGAGGACAAAGGAAGAATCCTACTGTAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGTCTTTCTTCAGAGGACAAAGGAAGAATCCTACTGTAGGTGA  400

seq1  GGGTCACAACACATGGATTAGTGTTTGTTAGACTCGGGAACTAAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAACACATGGATTAGTGTTTGTTAGACTCGGGAACTAAAAGAGG  450

seq1  AGAAAGGAAGATGGGGAGGTGGGTCAGCACGTCTCTTGAGCACTCCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGATGGGGAGGTGGGTCAGCACGTCTCTTGAGCACTCCCGTG  500

seq1  TTGGATATAATGCCTATTGTGAGGTATCAGAAGATAGAAACTTCGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATAATGCCTATTGTGAGGTATCAGAAGATAGAAACTTCGTGTGT  550

seq1  GGTGTTTGGGAGGTGAGGACTTTGAGAAGTGATTAAGATTACACAGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGGGAGGTGAGGACTTTGAGAAGTGATTAAGATTACACAGGGTT  600

seq1  CTCAGGGTGGGGACGCCTGACTGAATTCCAGAATATCATCTTCATGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTGGGGACGCCTGACTGAATTCCAGAATATCATCTTCATGACCA  650

seq1  CTAGGTGGCGAGCACGCCCCAGCTCTTAAGGACTATGACTCCAAGC-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGGTGGCGAGCACGCCCCAGCTCTTAAGGACTATGACTCCAAGCTTTT  700

seq1  AATAAGAGAAGGAGAGATGAGAAGATCAGAAGAGATAGATCTGCGCTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGAAGGAGAGATGAGAAGATCAGAAGAGATAGATCTGCGCTCCT  750

seq1  TTTTTCCCCCCTATGATACCTTGATGCCTTACACTTTCTGGGACCTTGTC  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTTCCCCCCTATGATACCTTGATGCCTTACACTTTCTGGGACTTTGTC  800

seq1  TAGATGAAGGCTAGTTCAGATGCTGAGTCTTGAACATGGAGAATTCATAA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGATGAAGGCTAGTTCAGATGCTGAGTCTTGAACATGGAGAA-TCATAA  849

seq1  TTATCAAGCCACAAATGTTTTACTATAACAACATAAATGGACATAGTCC-  898
      |||||||||||||||||||||| ||| ||||||| |||||||||||||| 
seq2  TTATCAAGCCACAAATGTTTTA-TAT-ACAACAT-AATGGACATAGTCCT  896

seq1  TTTTCACATACAAAATATATTCATCCATGTAGCTCAACGTTATTCTAGTA  948
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  TTTTCACATAC-AAATATATTCATCCATGTAGCTC-ACGTTATTCTAGTA  944

seq1  TTACCAGAATCAGAAATGAAATTCAAAATATCCCCAGTGAGCCCGTGGAG  998
      |||||||||||||||||||||||| |||||| ||||||||||| ||||||
seq2  TTACCAGAATCAGAAATGAAATTC-AAATAT-CCCAGTGAGCCGGTGGAG  992

seq1  TCAAATAAGTTAGTTTCTTCTGAAATAAAATGGGACCAGCTTAGAACAGA  1048
      ||||  |||||||||||||||||||| |||||||||||||| | ||||||
seq2  TCAA--AAGTTAGTTTCTTCTGAAAT-AAATGGGACCAGCTAAAAACAGA  1039

seq1  ATTTCCTTTTTAAAAAAATCAGTGACAAGGAAAAAGTGGTAGGTCCTACA  1098
      |||    ||||||||||||||||||| |||||||| |||||| |||| ||
seq2  ATT---CTTTTAAAAAAATCAGTGACCAGGAAAAA-TGGTAGTTCCT-CA  1084

seq1  G-ACTTT  1104
      | |||||
seq2  GAACTTT  1091