BAC Information

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BAC

Clone NameB6Ng01-089H04
Chromosome13 (Build37)
Map Location 40,759,719 - 40,825,371
singlet/doubletdoublet
Overlap geneLOC100039048, Tcfap2a
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
Downstream geneEG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089H04.bB6Ng01-089H04.g
ACCDH902022DH902023
length1,1821,006
definitionDH902022|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H04, 5' end.DH902023|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,759,719 - 40,760,915)(40,824,361 - 40,825,371)
sequence
gaattcagctcctggaacccatgtgaagatggaaggagggagccaactct
acaaagttgtcctctgaccaccacagattctccatggcatgtcctccacc
tactgtgcatatgcatgtacacacatacacacacacacacatgactattt
taagtaaaatgaagacaaggccagagaacatcattgctgcccttcttcct
tcttccttttctatgcatgcatatttctctagggaaaccttaccagacag
atggctaataggtgaggctgccattgctcaatagacagaactaattttcc
catggaggatagactgctgctcaagtctggtccaagcatgcaggcaacca
tggcaaagaaactacaacccccaaaacccacaggaatgagtctgtcatta
ctccatgagtgttcatatattttcatcttagtaaagcaatttatattttt
caaataagtcgttcaaacatctaatcaggtgctcctaaggggaaaaggaa
gactaacctcagctgtatagcaagttcaaggccagattgggttatgtaag
actgtctcaaaaaataatgaaatttccaggcagtggtggttaatgccttt
aatcacagcacttgggaggcagaagcaggtggatttctgaattcgaggcc
agcctggtctacagagtgagttccaggacagccagggctacgcagagaaa
ccctgtctcaaaaaaaccaaaccaaaaaaaaatacaaaaaaaattttttt
tttaataatgaaattagtatgataaacactctatttcatattgacttctt
aggaaagttgggtaacatggttacacttgaaagctgatcttgtagatgag
tttatttgggaacctaagtaagttggcccttacagaggtggagccagctc
cagattttcaggtgttggaggcagactcatgtcccatccaatttcaaatg
ttgcaatcccaacccctaggacttggttctgaaggaaatgttttttaaag
ggaagataacttaaaataaagtcaataacagtagccttctgctaaactct
ggctgtgtcctgtgagaaggaaatcagtaatggcagtgtacatactgtca
ccccagcatttacaggaactaagcaaggaatgcaccagttagaggccagc
tcaggttccaagtggatttcgtcaaactatta
gaattctgttccagaaacccgcagccgagaaactgcccgagatcctgagc
ttcttggccagggttccttgtggacctcgctttccgtttgcattcctatc
tccctttccacttttctctggctcctttccatccccaaatccaacgcgtc
gccactgccctgtccctgctggacctctccgtgcacgcagacctaccccg
cagctctttccttgggccagtttctcgccgggttcgtctttatttccttg
cgtctttacttgctccagagacgctctccatatctgatgttcaatccgtc
ttttggggtgggggtgaaaggcgcacctcggtgtgttcccctagcctggg
gcctggcggctaaacctcggagagaggttcccgctctctggaagccactc
ttggcttgctttgcaagcagcttgcaattgaaaaacctaaagtcgggggt
ttcttttgccctttggggctggggtggaaggggcgggggcctccgctccg
gggtgcacctctttctttttaaaagaactcggtgcggcagaatctttcta
ttttaaaccctggcttggcgtcttttcactccccattcatatcataaaaa
cgatcctgtcgtgtaaaaagcctacaaacagaggaagcggaaaagacaga
ccccccccccaaccatgcagttaaaacctttaagctagtcatttaaacgt
gcgctttcttaaggcctccgtgtgaagcatgtttctacttaaatagtcat
gaaatggtaatagtctttgaaggtttatgattttccccacctcgagatta
atagaagagtaaacaataatgcagtgggcgggacaggttcaattccggga
aaagcaagggccgcttctctggttatatttagtggctatctgaatttgct
taagaggcttggtactgccgctggttaaggatgtattacaggaccacagc
ttttacgtctccttcctctttgagaggattgtccctgagagtctatgggc
cactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40759719_40760915
seq2: B6Ng01-089H04.b_45_1226

seq1  GAATTCAGCTCCTGGAACCCATGTGAAGATGGAAGGAGGGAGCCAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCTGGAACCCATGTGAAGATGGAAGGAGGGAGCCAACTCT  50

seq1  ACAAAGTTGTCCTCTGACCACCACAGATTCTCCATGGCATGTCCTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGTCCTCTGACCACCACAGATTCTCCATGGCATGTCCTCCACC  100

seq1  TACTGTGCATATGCATGTACACACATACACACACACACACATGACTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCATATGCATGTACACACATACACACACACACACATGACTATTT  150

seq1  TAAGTAAAATGAAGACAAGGCCAGAGAACATCATTGCTGCCCTTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAATGAAGACAAGGCCAGAGAACATCATTGCTGCCCTTCTTCCT  200

seq1  TCTTCCTTTTCTATGCATGCATATTTCTCTAGGGAAACCTTACCAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTTCTATGCATGCATATTTCTCTAGGGAAACCTTACCAGACAG  250

seq1  ATGGCTAATAGGTGAGGCTGCCATTGCTCAATAGACAGAACTAATTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAATAGGTGAGGCTGCCATTGCTCAATAGACAGAACTAATTTTCC  300

seq1  CATGGAGGATAGACTGCTGCTCAAGTCTGGTCCAAGCATGCAGGCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGATAGACTGCTGCTCAAGTCTGGTCCAAGCATGCAGGCAACCA  350

seq1  TGGCAAAGAAACTACAACCCCCAAAACCCACAGGAATGAGTCTGTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGAAACTACAACCCCCAAAACCCACAGGAATGAGTCTGTCATTA  400

seq1  CTCCATGAGTGTTCATATATTTTCATCTTAGTAAAGCAATTTATATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAGTGTTCATATATTTTCATCTTAGTAAAGCAATTTATATTTTT  450

seq1  CAAATAAGTCGTTCAAACATCTAATCAGGTGCTCCTAAGGGGAAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTCGTTCAAACATCTAATCAGGTGCTCCTAAGGGGAAAAGGAA  500

seq1  GACTAACCTCAGCTGTATAGCAAGTTCAAGGCCAGATTGGGTTATGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACCTCAGCTGTATAGCAAGTTCAAGGCCAGATTGGGTTATGTAAG  550

seq1  ACTGTCTCAAAAAATAATGAAATTTCCAGGCAGTGGTGGTTAATGCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCAAAAAATAATGAAATTTCCAGGCAGTGGTGGTTAATGCCTTT  600

seq1  AATCACAGCACTTGGGAGGCAGAAGCAGGTGGATTTCTGAATTCGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGCACTTGGGAGGCAGAAGCAGGTGGATTTCTGAATTCGAGGCC  650

seq1  AGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACGCAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACGCAGAGAAA  700

seq1  CCCTGTCTCAAAAAAACCAAACCAAAAAAAAATACAAAAAAAA-TTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGTCTCAAAAAAACCAAACCAAAAAAAAATACAAAAAAAATTTTTTT  750

seq1  TTTAATAATGAAATTAGTATGATAAACACTCTATTTCATATTGACTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATGAAATTAGTATGATAAACACTCTATTTCATATTGACTTCTT  800

seq1  AGGAAAGTTGGGTAACATGGTTACACTTGAAAGCTGATCTTGTAGAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGAAAGTTGGGTAACATGGTTACACTTGAAAGCTGATCTTGTAG-ATGA  849

seq1  GTTTTATTTTGGAACCTAAGTAAGTTGGCCCCTTACAGAGGT-GAGCCAG  898
      | ||||||| |||||||||||||||||| ||||||||||||| |||||||
seq2  G-TTTATTTGGGAACCTAAGTAAGTTGG-CCCTTACAGAGGTGGAGCCAG  897

seq1  CTCCAGATTTTCCAGGTGTTGGAGGCAGACTCATGTCCCCATCCAAATTC  948
      ||||||||||| |||||||||||||||||||||||| ||||||||| |||
seq2  CTCCAGATTTT-CAGGTGTTGGAGGCAGACTCATGT-CCCATCCAATTTC  945

seq1  AAATGTTGCAATCCCAACCCCTAGGACCTGGGTTCTGAAGGACATGTTTT  998
      |||||||||||||||||||||||||| || |||||||||||| |||||||
seq2  AAATGTTGCAATCCCAACCCCTAGGA-CTTGGTTCTGAAGGAAATGTTTT  994

seq1  TAAAAGGGAGATTAACTTAAAATAAAGTC-ATTACAGTAGCC-TCTGCTA  1046
      | |||||||   ||||||||||||||||| || ||||||||| |||||||
seq2  TTAAAGGGAAGATAACTTAAAATAAAGTCAATAACAGTAGCCTTCTGCTA  1044

seq1  CACTCTGGCTGGTGTCCTTGTGAGAAGGAAATCAGT-ATTGCAGGGTGGT  1095
       ||||||||| |||||| |||||||||||||||||| || ||||    ||
seq2  AACTCTGGCT-GTGTCC-TGTGAGAAGGAAATCAGTAATGGCAG---TGT  1089

seq1  ACATACTTGTCACCCCAGCATTTACAGGAGACTAAAGCAGAGGAATTGCC  1145
      |||||| |||||||||||||||||||||| ||| ||||| ||||||   |
seq2  ACATAC-TGTCACCCCAGCATTTACAGGA-ACT-AAGCA-AGGAAT--GC  1133

seq1  ACAAGTTAGAGGCCAGCTCAGGCTCCACAGTGAAATTCTGTCAAAACTAT  1195
      || ||||||||||||||||||| |||| |||| | ||| ||| |||||||
seq2  ACCAGTTAGAGGCCAGCTCAGGTTCCA-AGTGGATTTC-GTC-AAACTAT  1180

seq1  TA  1197
      ||
seq2  TA  1182

seq1: chr13_40824361_40825371
seq2: B6Ng01-089H04.g_70_1075 (reverse)

seq1  ATAGTGGCACAGTAGACTCTCAGGGACATTCCTCTCAAAGGAGGGAAGGA  50
      |||||||| || |||||||||||||||| |||||||||||   |||||||
seq2  ATAGTGGCCCA-TAGACTCTCAGGGACAATCCTCTCAAAG--AGGAAGGA  47

seq1  GACGTAAAAGACTGT-GTCCTGTAATACAACCCTTAACAGCCGCAGTACC  99
      |||||||||| |||| ||||||||||||| || | | |||| ||||||||
seq2  GACGTAAAAG-CTGTGGTCCTGTAATACATCCTTAACCAGCGGCAGTACC  96

seq1  AAGCCTTCCTTAAGCAAAATTCAGATAGCCACTAAATATTAAACAGGAGA  149
      ||||||  ||||||| |||||||||||||||||||||||  |||  ||||
seq2  AAGCCT--CTTAAGC-AAATTCAGATAGCCACTAAATAT--AACCAGAGA  141

seq1  AGCGGCCTTTGCTTTTCCCGGATTTGAACCTGTCC--GCCACTGCATTAT  197
      ||||||| |||||||||||||| ||||||||||||   ||||||||||||
seq2  AGCGGCCCTTGCTTTTCCCGGAATTGAACCTGTCCCGCCCACTGCATTAT  191

seq1  TGTTTACTCTTCTATTAATCTCGAGGTGGGGAAAATCATAAACCTTCAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTCTTCTATTAATCTCGAGGTGGGGAAAATCATAAACCTTCAAA  241

seq1  GACTATTACCATTTCATGACTATTTAAGTAGAAACATGCTTCACACGGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTACCATTTCATGACTATTTAAGTAGAAACATGCTTCACACGGAG  291

seq1  GCCTTAAGAAAGCGCACGTTTAAATGACTAGCTTAAAGGTTTTAACTGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAGAAAGCGCACGTTTAAATGACTAGCTTAAAGGTTTTAACTGCA  341

seq1  TGGTTGGGGGGGGGGTCTGTCTTTTCCGCTTCCTCTGTTTGTAGGCTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGGGGGGGGTCTGTCTTTTCCGCTTCCTCTGTTTGTAGGCTTTT  391

seq1  TACACGACAGGATCGTTTTTATGATATGAATGGGGAGTG-AAAGACGCCA  446
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACACGACAGGATCGTTTTTATGATATGAATGGGGAGTGAAAAGACGCCA  441

seq1  AGCCAGGGTTTAAAATAGAAAGATTCTGCCGCACCGAGTTCTTTTAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGTTTAAAATAGAAAGATTCTGCCGCACCGAGTTCTTTTAAAAA  491

seq1  GAAAGAGGTGCACCCCGGAGCGGAGGCCCCCGCCCCTTCCACCCCAGCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTGCACCCCGGAGCGGAGGCCCCCGCCCCTTCCACCCCAGCCC  541

seq1  CAAAGGGCAAAAGAAACCCCCGACTTTAGGTTTTTCAATTGCAAGCTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCAAAAGAAACCCCCGACTTTAGGTTTTTCAATTGCAAGCTGCT  591

seq1  TGCAAAGCAAGCCAAGAGTGGCTTCCAGAGAGCGGGAACCTCTCTCCGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCAAGCCAAGAGTGGCTTCCAGAGAGCGGGAACCTCTCTCCGAG  641

seq1  GTTTAGCCGCCAGGCCCCAGGCTAGGGGAACACACCGAGGTGCGCCTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCGCCAGGCCCCAGGCTAGGGGAACACACCGAGGTGCGCCTTTC  691

seq1  ACCCCCACCCCAAAAGACGGATTGAACATCAGATATGGAGAGCGTCTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACCCCAAAAGACGGATTGAACATCAGATATGGAGAGCGTCTCTG  741

seq1  GAGCAAGTAAAGACGCAAGGAAATAAAGACGAACCCGGCGAGAAACTGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTAAAGACGCAAGGAAATAAAGACGAACCCGGCGAGAAACTGGC  791

seq1  CCAAGGAAAGAGCTGCGGGGTAGGTCTGCGTGCACGGAGAGGTCCAGCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAAGAGCTGCGGGGTAGGTCTGCGTGCACGGAGAGGTCCAGCAG  841

seq1  GGACAGGGCAGTGGCGACGCGTTGGATTTGGGGATGGAAAGGAGCCAGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGCAGTGGCGACGCGTTGGATTTGGGGATGGAAAGGAGCCAGAG  891

seq1  AAAAGTGGAAAGGGAGATAGGAATGCAAACGGAAAGCGAGGTCCACAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGAAAGGGAGATAGGAATGCAAACGGAAAGCGAGGTCCACAAGG  941

seq1  AACCCTGGCCAAGAAGCTCAGGATCTCGGGCAGTTTCTCGGCTGCGGGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGCCAAGAAGCTCAGGATCTCGGGCAGTTTCTCGGCTGCGGGTT  991

seq1  TCTGGAACAGAATTC  1011
      |||||||||||||||
seq2  TCTGGAACAGAATTC  1006