BAC Information

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BAC

Clone NameB6Ng01-089I18
Chromosome13 (Build37)
Map Location 38,092,971 - 38,251,305
singlet/doubletdoublet
Overlap geneCage1, Riok1, Dsp
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1
Downstream gene6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I18.bB6Ng01-089I18.g
ACCDH902098DH902099
length1,0611,018
definitionDH902098|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I18, 5' end.DH902099|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,250,247 - 38,251,305)(38,092,971 - 38,093,977)
sequence
gaattcattctaaaacttgtttaaacaagaatggctctaagcttctgtat
aaggctcccttcatcagtgggtaaagggaaaaagcgttccggagttaaat
cccaaagcagatcacacagtcatctttgtgagcagcagccagccagccag
ccagccgcactttacctcagcatgctcaaacagcattcctctcaaagaaa
gaaagaaagaaagaaagaaaaaaaaaaatcccaagatgagctgtcttaaa
gcacttgctgaacatctgctgacagaatagtatagaaaggaaattttgat
gccaggcctgcaacattatgaggtaaaaatgctttgttttacaaaactgc
ataataacctttactgctcactagcccccatgccatctttctgcatttct
ttctgtgtgcacacattctcttccatgggtcacatcttcccgtcctctct
tttcatctctctcccttcttccttcgggctgtttggagtcatgtatgcgt
gcccaaaatgaaggaatatgtctctctgtattcaggctcattaaacaatg
cctcacaccccacccctcaaaaaaaaaaaaaaaaaaaaaaaacctcagta
aatgtctgttggaaattataaatacataatgctttaatcttaaggcctaa
tcaattctctctttataatttttaaagtgttttttgtatatcatacattg
ttaggtttcttgggtttttttttttgtttgtttttgtttttaaagaatct
taagtaaaatgaaaaaaaaaaaagaaagaaaaaaaacaaagtctaatatt
acttcatgtaaggttgaccccagccatcaggtgagttgctgggtgcccca
aggacggctcttccccagggcttacctgctcactcttgcccccacttctc
ttgaacttatttacacacaggtgcagctacctccactgcgtcttcccctc
tacaagcacctaacaaatatacagctctgtgtcacctcaggtgccagggc
ctggcttgtgtgggctcataaatcggaagaaaaacagggcaagcacatga
acattttgatg
gaattcagtaaaaaaaacatgcacatatgtgttctggggaatattgtaga
gcttcagattgagttatagagactggcagacagtagccagtacatagcct
actcaattatgacaatatcaaagtgctgtgtggctgcaacagtctctctg
aaggcctaatggggagtcagggaaaaggatgcttgcatgaagagtgtttc
agaggaggggtaagtattcagtagctataatgtcgatgtgagagacagcg
aaagcggtggagtaagtcatgaaagacgtaaagagtcagactcaggggac
aggagacagcacagtgatcacacaggaatggctgtggtgcagccaaagct
tggcgtggagaaagaagcagcaggggccacaggcaacctctgtcttgtcc
caagcccctaagaagagaccctaggcgagaagcaaaccttcaggctctgg
ctcctgttcagttggcagcctggatttcccgtcctctgtctggtccttag
gctatgctggtcactcttctccaaggccatgtcccatcaagcatcccatg
cttcccttcagctctgctcctagcacacgccttctcagcacatactatgc
tgatcttcaaccacctatgcgagctcctcttactgtttttgtttttgaga
caggatttcactgtgtatcccaatctggcctcaaactcactatgtagccc
aggttagcctcaaactcatggcagtcctcctgccccaaccattagagtac
ttgaaattaaaggcatgtaaaagggtgaccaccatgcatttcagaacaac
tctgcttcacatctgggaagccttctcttagtgttcacagctcacagtta
ccacatgcttctccacttcacccaggagatcactgcacagcttcattccc
tccttaaatggccacagtcactgtctgtcaccagtttctcttgcctgagt
agcttcacagtattccaattctagtgtcaccctccatcagtaccccctgg
tgaaagaccctaggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38250247_38251305
seq2: B6Ng01-089I18.b_42_1102 (reverse)

seq1  CATC-AAATGGTCATGTGCTTGCCTTTGTTTTTCTTCCGATTTACTGAG-  48
      |||| ||||| |||||||||||||  |||||||||||||||||| |||| 
seq2  CATCAAAATGTTCATGTGCTTGCC-CTGTTTTTCTTCCGATTTA-TGAGC  48

seq1  CCACACAAG-CAGGCCCTGGCACCTGAGGTG-TACAGAGCTGTAT-GTTG  95
      ||||||||| |||||||||||||||||||||  ||||||||||||  |||
seq2  CCACACAAGCCAGGCCCTGGCACCTGAGGTGACACAGAGCTGTATATTTG  98

seq1  TTAGGTGCCTGTAGGAGGGGAAGACGCAGTGGAGGTAGCTGCACCTGTGT  145
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCTTGTA-GAGGGGAAGACGCAGTGGAGGTAGCTGCACCTGTGT  147

seq1  GTAAATAAGTTCAAGAGAAGTGGGGGC-AGAGTGAGCAGGTAAGCCCTGG  194
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAAATAAGTTCAAGAGAAGTGGGGGCAAGAGTGAGCAGGTAAGCCCTGG  197

seq1  GGAAGAGGCGTCCTTGGGGCACCCAGCAACTCACCTGATGGCTGGGGTCA  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCCGTCCTTGGGGCACCCAGCAACTCACCTGATGGCTGGGGTCA  247

seq1  ACCTTACATGAAGTAATATTAGACTTTGTTTTTTTTTCTTTCTTTTTTTT  294
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTTACATGAAGTAATATTAGACTTTG-TTTTTTTTCTTTCTTTTTTTT  296

seq1  TTTTCATTTTACTTAAGATTCTTTAAAAACAAAAACAAACAAAAAAAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTACTTAAGATTCTTTAAAAACAAAAACAAACAAAAAAAAAA  346

seq1  ACCCAAGAAACCTAACAATGTATGATATACAAAAAACACTTTAAAAATTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAAACCTAACAATGTATGATATACAAAAAACACTTTAAAAATTA  396

seq1  TAAAGAGAGAATTGATTAGGCCTTAAGATTAAAGCATTATGTATTTATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGAATTGATTAGGCCTTAAGATTAAAGCATTATGTATTTATAA  446

seq1  TTTCCAACAGACATTTACTGAGGTTTTTTTTTTTTTTTTTTTTTTTTGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACAGACATTTACTGAGGTTTTTTTTTTTTTTTTTTTTTTTTGAG  496

seq1  GGGTGGGGTGTGAGGCATTGTTTAATGAGCCTGAATACAGAGAGACATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGTGTGAGGCATTGTTTAATGAGCCTGAATACAGAGAGACATAT  546

seq1  TCCTTCATTTTGGGCACGCATACATGACTCCAAACAGCCCGAAGGAAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTTTGGGCACGCATACATGACTCCAAACAGCCCGAAGGAAGAA  596

seq1  GGGAGAGAGATGAAAAGAGAGGACGGGAAGATGTGACCCATGGAAGAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGATGAAAAGAGAGGACGGGAAGATGTGACCCATGGAAGAGAA  646

seq1  TGTGTGCACACAGAAAGAAATGCAGAAAGATGGCATGGGGGCTAGTGAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACACAGAAAGAAATGCAGAAAGATGGCATGGGGGCTAGTGAGC  696

seq1  AGTAAAGGTTATTATGCAGTTTTGTAAAACAAAGCATTTTTACCTCATAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGTTATTATGCAGTTTTGTAAAACAAAGCATTTTTACCTCATAA  746

seq1  TGTTGCAGGCCTGGCATCAAAATTTCCTTTCTATACTATTCTGTCAGCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAGGCCTGGCATCAAAATTTCCTTTCTATACTATTCTGTCAGCAG  796

seq1  ATGTTCAGCAAGTGCTTTAAGACAGCTCATCTTGGGATTTTTTTTTTTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGCAAGTGCTTTAAGACAGCTCATCTTGGGATTTTTTTTTTTCT  846

seq1  TTCTTTCTTTCTTTCTTTCTTTGAGAGGAATGCTGTTTGAGCATGCTGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTGAGAGGAATGCTGTTTGAGCATGCTGAG  896

seq1  GTAAAGTGCGGCTGGCTGGCTGGCTGGCTGCTGCTCACAAAGATGACTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGCGGCTGGCTGGCTGGCTGGCTGCTGCTCACAAAGATGACTGT  946

seq1  GTGATCTGCTTTGGGATTTAACTCCGGAACGCTTTTTCCCTTTACCCACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGCTTTGGGATTTAACTCCGGAACGCTTTTTCCCTTTACCCACT  996

seq1  GATGAAGGGAGCCTTATACAGAAGCTTAGAGCCATTCTTGTTTAAACAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGGAGCCTTATACAGAAGCTTAGAGCCATTCTTGTTTAAACAAG  1046

seq1  TTTTAGAATGAATTC  1059
      |||||||||||||||
seq2  TTTTAGAATGAATTC  1061

seq1: chr13_38092971_38093977
seq2: B6Ng01-089I18.g_69_1086

seq1  GAATTCAGTAAATAAAACATGCACATATGTGTTCTGGGGAATATTGTAGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAAAAACATGCACATATGTGTTCTGGGGAATATTGTAGA  50

seq1  GCTTCAGATTGAGTTATAGAGACTGGCAGACAGTAGCCAGTACATAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGATTGAGTTATAGAGACTGGCAGACAGTAGCCAGTACATAGCCT  100

seq1  ACTCAATTATGACAATATCAAAGTGCTGTGTGGCTGCAACAGTCTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTATGACAATATCAAAGTGCTGTGTGGCTGCAACAGTCTCTCTG  150

seq1  AAGGCCTAATGGGGAGTCAGGGAAAAGGATGCTTGCATGAAGAGTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTAATGGGGAGTCAGGGAAAAGGATGCTTGCATGAAGAGTGTTTC  200

seq1  AGAGGAGGGGTAAGTATTCAGTAGCTATAATGTCGATGTGAGAGACAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGGTAAGTATTCAGTAGCTATAATGTCGATGTGAGAGACAGCG  250

seq1  AAAGCGGTGGAGTAAGTCATGAAAGACGTAAAGAGTCAGACTCAGGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGTGGAGTAAGTCATGAAAGACGTAAAGAGTCAGACTCAGGGGAC  300

seq1  AGGAGACAGCACAGTGATCACACAGGAATGGCTGTGGTGCAGCCAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAGCACAGTGATCACACAGGAATGGCTGTGGTGCAGCCAAAGCT  350

seq1  TGGCGTGGAGAAAGAAGCAGCAGGGGCCACAGGCAACCTCTGTCTTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGGAGAAAGAAGCAGCAGGGGCCACAGGCAACCTCTGTCTTGTCC  400

seq1  CAAGCCCCTAAGAAGAGACCCTAGGCGAGAAGCAAACCTTCAGGCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTAAGAAGAGACCCTAGGCGAGAAGCAAACCTTCAGGCTCTGG  450

seq1  CTCCTGTTCAGTTGGCAGCCTGGATTTCCCGTCCTCTGTCTGGTCCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCAGTTGGCAGCCTGGATTTCCCGTCCTCTGTCTGGTCCTTAG  500

seq1  GCTATGCTGGTCACTCTTCTCCAAGGCCATGTCCCATCAAGCATCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTGGTCACTCTTCTCCAAGGCCATGTCCCATCAAGCATCCCATG  550

seq1  CTTCCCTTCAGCTCTGCTCCTAGCACACGCCTTCTCAGCACATACTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCAGCTCTGCTCCTAGCACACGCCTTCTCAGCACATACTATGC  600

seq1  TGATCTTCAACCACCTATGCGAGCTCCTCTTACTGTTTT--GTTTTGAGA  648
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  TGATCTTCAACCACCTATGCGAGCTCCTCTTACTGTTTTTGTTTTTGAGA  650

seq1  CAGGATTTCACTGTGTATCCCAATCTGGCCTCAAACTCACTATGTAGCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTCACTGTGTATCCCAATCTGGCCTCAAACTCACTATGTAGCCC  700

seq1  AGGTTAGCCTCAAACTCATGGCAGTCCTCCTGCCCCAACCATTAGAGTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCCTCAAACTCATGGCAGTCCTCCTGCCCCAACCATTAGAGTAC  750

seq1  -TGAAATTAAAGGCATGTAAAA-GGTGACCACCATGCA-TTCAGAACAAC  795
       ||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TTGAAATTAAAGGCATGTAAAAGGGTGACCACCATGCATTTCAGAACAAC  800

seq1  TCTGCTCCACATCT-GGAAGCCTTCTCTTAGTGTTCACAGCTCACAAGTT  844
      |||||| ||||||| |||||||||||||||||||||||||||||| ||||
seq2  TCTGCTTCACATCTGGGAAGCCTTCTCTTAGTGTTCACAGCTCAC-AGTT  849

seq1  ACCACATGC-TCTCCACTTCACCCAGGAGATCACTGCACAGCTTCATTCC  893
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGCTTCTCCACTTCACCCAGGAGATCACTGCACAGCTTCATTCC  899

seq1  C-CCTT-AATGGCCACAGTCACTGTCTGTCA-CAGTTTCTCTTGCCTGAG  940
      | |||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCCTTAAATGGCCACAGTCACTGTCTGTCACCAGTTTCTCTTGCCTGAG  949

seq1  TAGCTTCACAGTATTCCCAATTCTAGTGTCA-CCTCCATCAGTACTCC--  987
      ||||||||||||||| ||||||||||||||| ||||||||||||| ||  
seq2  TAGCTTCACAGTATT-CCAATTCTAGTGTCACCCTCCATCAGTACCCCCT  998

seq1  TGTGAAAGACCCTAAGAGCA  1007
       ||||||||||||| |||||
seq2  GGTGAAAGACCCTAGGAGCA  1018