BAC Information

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BAC

Clone NameB6Ng01-089M03
Chromosome13 (Build37)
Map Location 62,234,358 - 62,361,521
singlet/doubletdoublet
Overlap geneEG630579, EG630594, LOC665455, LOC100041430
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444
Downstream geneLOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M03.bB6Ng01-089M03.g
ACCDH902252DH902253
length9961,163
definitionDH902252|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M03, 5' end.DH902253|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,360,518 - 62,361,521)(62,234,358 - 62,235,525)
sequence
gaattcatttgatgtcagtctggttcgtggtaaaggagaattttcttaac
agaattgcttcttcatagaagcctagacttgtcaatcttgggatcattcc
aatcctcagaagaattggactgatgctaactgctctagagctagatgtag
aagaaaatctggtttctgtagttggaaggggagatttactgtgttctgat
ccatcacacaatccttctgtatagttaacttttagtgctgtcataaaaca
taccatagccaatgcaaattatacatgaaagcattaaattagacttacac
ttctaaagaattagagtccgttatgacaatgtaagcacatggcaacaaga
gcagagagctcacattttgaatctctgtctggatgtaaacatcaacatag
attttttaaaaatccaaataaaaattttaaccatttaaaacagaaagctg
ggccaggcgtggtggcgcacgcctttaatcccagcacttgggaggcagag
gcaggaagatttctgagttcaaggccagcctggtctacaaattgagttcc
aggacagccagggctacacagagaaaccctgtctcgaagaaaaaaaaaaa
aaaaaacagagagctgggctggagagatggctccaagcttaagagcactg
actattcttccgaaggtcctgagttcaaatcccagcaaccacatagtggt
ttcacaaaccatccataatgagatctgatgccctcttctggtgtgtctga
aacagctacagtgcacttatgtataataaataaataaataatatttttta
aaaatggtttaaaataattaaataaaataaaacagaaaagctaatcccag
gggtatgtgccatgatctagaacacagagttctcaacatgattatagaga
aatagaaaactcactgacacatgaggcactagatacacaatcaagactgg
gtgcgtgtggtgacataatgaggaatggagagaatagcctaacaat
gaattcatactgtttcctaggctgggtcttctttgggcatcagccagagc
tgaataagtgatctctccctgggaaagatgttaatccacaccagctgtac
ctccaggatttaaataatgtttctgagacaagctttcctaggttgagtca
ggtagcattcattccactctgtatttcccaggacaatgacattggcttct
attgactaaaccaactaaatacttaagtctaaatcactaacaccactgtg
tttttaaattacttgctgagtcatgtatgtaatcaagttttttattacag
taagaggaacaggatttgcatgaagggcatggcttctgcattcacatcag
aagagaagggagtttattgcgatccctactggggaaacagggtaggcaat
cagctgctggagttgccattatgaacaagacctgatcatggcagggaggt
gatttttaattttggatcatgtattaatcatgttctgtgatgaagacagc
ctatattgatgggtgtttgagttgtgaatgtcagttaagccactgagcat
tcaattcgaacgtagggtactgttctacagatacatgtgcaatcttcact
gacatcattaagtcagctcaagaattgaatcccaggccatcgggtgtagt
tgtgtgtgtgtcaagttgtgtgtcaagttacaggtgtcagcaactaagag
tccacatagaggcaagttcaagtagtgtttgattaatgctattcctgatg
tgaggatatgggctgctagttttgaatgtcagtatggcttgtggtttttt
agtaatatttaagttggaaaaaatcaattattggttcccctttcaatgta
atttctatgaattaagcactgctctgatctcttactatttgcaattctgt
tgtatttcccaggtataagaatttcttttcatattttacaaggtcagttt
aggacaaggtctcttgatgcccaggctggcttcatgctatgtattgataa
ctgctttgaacatctggtcctgtccctaagacacatgattcaaagacagt
gctgcatgtctttttatctaggctttgaaggggaagatttctggttgggc
actactgacattaccaagaaaagggaggtgagaatccaccctgacttgca
tgactctggctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62360518_62361521
seq2: B6Ng01-089M03.b_45_1040 (reverse)

seq1  ATTGTTTATGGCTATTTCTCTCCATTCCCTCATTATGTCACCAACACTGC  50
      ||||||   ||||| ||||||||||| ||||||||||||||| |||| ||
seq2  ATTGTT--AGGCTA-TTCTCTCCATT-CCTCATTATGTCACC-ACAC-GC  44

seq1  ACACAGTCTTGATTGTTGTATCTTTGTGCCTCATTGTGTCAGTGTGTTTT  100
      || |||||||||||| |||||| | |||||||| |||||||||| |||||
seq2  ACCCAGTCTTGATTG-TGTATC-TAGTGCCTCA-TGTGTCAGTGAGTTTT  91

seq1  CTATTTCTCTATAATCCTGTTGAGAACTCTGTGTTCTAGATCATGGCACA  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATTTCTCTATAATCATGTTGAGAACTCTGTGTTCTAGATCATGGCACA  141

seq1  TA-CCCTGGGATTAGCTTTTCTGTTTTATTTTTATTTAATTATTTTAAAC  199
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACCCCTGGGATTAGCTTTTCTGTTTTA-TTTTATTTAATTATTTTAAAC  190

seq1  CATTTTTAAAAAATATTTATTTATTTATTTATTATACATAAGTGCACTGT  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAAAATA-TTATTTATTTATTTATTATACATAAGTGCACTGT  239

seq1  AGCTGTTTCAGACACACCAGAAGAGGGCATCAGATCTCATTATGGATGG-  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCTGTTTCAGACACACCAGAAGAGGGCATCAGATCTCATTATGGATGGT  289

seq1  TTGTG-AACCACTATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAA  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAACCACTATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAA  339

seq1  GAATAGTCAGTGCTCTTAAGCTTGGAGCCATCTCTCCAGCCCAGCTCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTCAGTGCTCTTAAGCTTGGAGCCATCTCTCCAGCCCAGCTCTCT  389

seq1  GTTTTTTTTTTTTTTTTTCTTCGAGACAGGGTTTCTCTGTGTAGCCCTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTCTTCGAGACAGGGTTTCTCTGTGTAGCCCTGG  439

seq1  CTGTCCTGGAACTCAATTTGTAGACCAGGCTGGCCTTGAACTCAGAAATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCAATTTGTAGACCAGGCTGGCCTTGAACTCAGAAATC  489

seq1  TTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACG  539

seq1  CCTGGCCCAGCTTTCTGTTTTAAATGGTTAAAATTTTTATTTGGATTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCAGCTTTCTGTTTTAAATGGTTAAAATTTTTATTTGGATTTTT  589

seq1  AAAAAATCTATGTTGATGTTTACATCCAGACAGAGATTCAAAATGTGAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTATGTTGATGTTTACATCCAGACAGAGATTCAAAATGTGAGC  639

seq1  TCTCTGCTCTTGTTGCCATGTGCTTACATTGTCATAACGGACTCTAATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCTTGTTGCCATGTGCTTACATTGTCATAACGGACTCTAATTC  689

seq1  TTTAGAAGTGTAAGTCTAATTTAATGCTTTCATGTATAATTTGCATTGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGTGTAAGTCTAATTTAATGCTTTCATGTATAATTTGCATTGGC  739

seq1  TATGGTATGTTTTATGACAGCACTAAAAGTTAACTATACAGAAGGATTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATGTTTTATGACAGCACTAAAAGTTAACTATACAGAAGGATTGT  789

seq1  GTGATGGATCAGAACACAGTAAATCTCCCCTTCCAACTACAGAAACCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGATCAGAACACAGTAAATCTCCCCTTCCAACTACAGAAACCAGA  839

seq1  TTTTCTTCTACATCTAGCTCTAGAGCAGTTAGCATCAGTCCAATTCTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTACATCTAGCTCTAGAGCAGTTAGCATCAGTCCAATTCTTCT  889

seq1  GAGGATTGGAATGATCCCAAGATTGACAAGTCTAGGCTTCTATGAAGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGGAATGATCCCAAGATTGACAAGTCTAGGCTTCTATGAAGAAG  939

seq1  CAATTCTGTTAAGAAAATTCTCCTTTACCACGAACCAGACTGACATCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTTAAGAAAATTCTCCTTTACCACGAACCAGACTGACATCAAA  989

seq1  TGAATTC  1004
      |||||||
seq2  TGAATTC  996

seq1: chr13_62234358_62235525
seq2: B6Ng01-089M03.g_69_1231

seq1  GAATTCATACTGTTTCCTAGGCTGGGTCTTCTTTGGGCATCAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGTTTCCTAGGCTGGGTCTTCTTTGGGCATCAGCCAGAGC  50

seq1  TGAATAAGTGATCTCTCCCTGGGAAAGATGTTAATCCACACCAGCTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTGATCTCTCCCTGGGAAAGATGTTAATCCACACCAGCTGTAC  100

seq1  CTCCAGGATTTAAATAATGTTTCTGAGACAAGCTTTCCTAGGTTGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGATTTAAATAATGTTTCTGAGACAAGCTTTCCTAGGTTGAGTCA  150

seq1  GGTAGCATTCATTCCACTCTGTATTTCCCAGGACAATGACATTGGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATTCATTCCACTCTGTATTTCCCAGGACAATGACATTGGCTTCT  200

seq1  ATTGACTAAACCAACTAAATACTTAAGTCTAAATCACTAACACCACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAAACCAACTAAATACTTAAGTCTAAATCACTAACACCACTGTG  250

seq1  TTTTTAAATTACTTGCTGAGTCATGTATGTAATCAAGTTTTTTATTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTACTTGCTGAGTCATGTATGTAATCAAGTTTTTTATTACAG  300

seq1  TAAGAGGAACAGGATTTGCATGAAGGGCATGGCTTCTGCATTCACATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAACAGGATTTGCATGAAGGGCATGGCTTCTGCATTCACATCAG  350

seq1  AAGAGAAGGGAGTTTATTGCGATCCCTACTGGGGAAACAGGGTAGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGGAGTTTATTGCGATCCCTACTGGGGAAACAGGGTAGGCAAT  400

seq1  CAGCTGCTGGAGTTGCCATTATGAACAAGACCTGATCATGGCAGGGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGGAGTTGCCATTATGAACAAGACCTGATCATGGCAGGGAGGT  450

seq1  GATTTTTAATTTTGGATCATGTATTAATCATGTTCTGTGATGAAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAATTTTGGATCATGTATTAATCATGTTCTGTGATGAAGACAGC  500

seq1  CTATATTGATGGGTGTTTGAGTTGTGAATGTCAGTTAAGCCACTGAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGATGGGTGTTTGAGTTGTGAATGTCAGTTAAGCCACTGAGCAT  550

seq1  TCAATTCGAACGTAGGGTACTGTTCTACAGATACATGTGCAATCTTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCGAACGTAGGGTACTGTTCTACAGATACATGTGCAATCTTCACT  600

seq1  GACATCATTAAGTCAGCTCAAGAATTGAATCCCAGGCCATCGGGTGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATTAAGTCAGCTCAAGAATTGAATCCCAGGCCATCGGGTGTAGT  650

seq1  TGTGTGTGTGTCAAGTTGTGTGTCAAGTTACAGGTGTCAGCAACTAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTCAAGTTGTGTGTCAAGTTACAGGTGTCAGCAACTAAGAG  700

seq1  TCCACATAGAGGCAAGTTCAAGTAGTGTTTGATTAATGCTATTCCTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAGAGGCAAGTTCAAGTAGTGTTTGATTAATGCTATTCCTGATG  750

seq1  TGAGGATATGGGCTGCTAGTTTTGAATGTCAGTATGGCTTGTGGTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATATGGGCTGCTAGTTTTGAATGTCAGTATGGCTTGTGGTTTTTT  800

seq1  AGTAATATTTAAGTTGGAAAAAATCAATTATTGGTTCCCCTTTCAATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTTAAGTTGGAAAAAATCAATTATTGGTTCCCCTTTCAATGTA  850

seq1  ATTTCTATGAATTAAGCACTGCTCTGATCTCTTACTATTTGCAATTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGAATTAAGCACTGCTCTGATCTCTTACTATTTGCAATTCTGT  900

seq1  TGTATTTCCCAGGTATAAGAATTTCTTTTCATATTTTACAAGGTCAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCCCAGGTATAAGAATTTCTTTTCATATTTTACAAGGTCAGTTT  950

seq1  AGGACAAGGTCTCTTGATGCCCAGGCTGGC-TCATGCTATGTAATTGATA  999
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AGGACAAGGTCTCTTGATGCCCAGGCTGGCTTCATGCTATGT-ATTGATA  999

seq1  ACTGCTTTGAACATCTGGTCCTGTCCCTAAGACCACATGATTCAAAGACA  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGCTTTGAACATCTGGTCCTGTCCCTAAGA-CACATGATTCAAAGACA  1048

seq1  GTGCTGCATGTCTTCTAGCCTAGGCTTTGAAGGGGAAAGTTTTCCTGGTT  1099
      |||||||||||||| |   ||||||||||||||||||  |||  ||||||
seq2  GTGCTGCATGTCTTTTTATCTAGGCTTTGAAGGGGAAGATTT--CTGGTT  1096

seq1  TGGCACTACTTGACATTAGCAATGAGAGTGAGGTTGATAAT-CACCTTGA  1148
       |||||||| |||||||| |||  | || |||| ||| ||| |||| |||
seq2  GGGCACTAC-TGACATTACCAAGAAAAGGGAGG-TGAGAATCCACCCTGA  1144

seq1  CTGGCCATGACTCTGGCTGC  1168
      || | |||||||||||||||
seq2  CTTG-CATGACTCTGGCTGC  1163