BAC Information

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BAC

Clone NameB6Ng01-091E05
Chromosome13 (Build37)
Map Location 116,110,308 - 116,111,519
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091E05.bB6Ng01-091E05.g
ACCDH903339DH903340
length1,177874
definitionDH903339|Mus musculus domesticus DNA, BAC clone: B6Ng01-091E05, 5' end.DH903340|Mus musculus domesticus DNA, BAC clone: B6Ng01-091E05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtgtatttatactgacatgtgtaattattggattttaatttc
tgtgggcagcttggccttagacttcatgtttcactctcttgctgggtcta
ttgttcaggaaggacatactgtcattaggccattacacaactatcagttc
aggaactctgacagtgtcataatactatttttaatatctgttcaaattca
atatttgttttatataacatttccttttagcctttataatactcttctgg
aaagtcagagttgttttaatctttgcatttcatttatgagtctgacagct
gagggagtgtgttgtgttggaacccatgttgtgaggattaagtcttggtc
aatcctgagagtttctggtcccttcctcatagttcctcaatgagattcct
ttagtggtcttatactgcaactacctcgaggtagcttctctgtgggacag
ttaaataaaacctacttgattagtcctgaagatcactatagcttacctag
acaggtcactagagtaacaagccgtgggtcacagtgggtaatgggaaatg
tttgactctttttttgaaacacatcaactaaaattactggccattgtgtc
agtctggctccctatttctctcagtcctgtgcattttttaatgacctttc
cacgtacccactacatgtcactaaataactgaggacgacaagtagtaaaa
tattgatttctgttatatatttttcctaatcatcgaaaggacgagctcca
tgtaaatcttaaaataaaatgtcatgttgtactttaatactattgatgta
tagcaatggactttgaggcttttgtctttagccacttatatccttacatg
tataatatttatatatatgtacataaagtatattctccatacaaattaac
attcttcataaaccagtggtttacattctacttacgaaaactttactgtt
caagtacttctagatttggtagtgtgacctttaagatgacctgtggatta
tgttgattgataggcaaatcctacttattattttcgaaaacacatctcat
gaaaagagaattaaaaaaattaatcaagatgctttgaaagtgagaaatac
tgagtggcaagttcattgtcgtatcctcttttggcagaacacagccctgc
atggatcataagcactaagcttactta

gaattcaaggctagtctgagcaacagggtgtgttattatctcaaaataaa
aacaaaaagagagttgttggttatgactcagtggtatagtgcctgtttag
catggacaaggcactaacctcaatccttactatcatcacagaaaaaaaaa
aagaaaaaaagaagacagaagtttgaaaagttaaaatacgaaactttaag
aaggaaaactaaagaaaagaatgtgaaaggagatatccggaatagatgga
aaaggttgttttcagaagccaaaggtttttaaacatatggaaaggcacca
aaggccttcaacataggtttgtgcaattccctgtgtttggctaccacatc
gagatgaaatgatcctatttctgaagacagcacataccttggatacatga
tacagagaaatcaagctacaagaggtccaaggaggccagcatttatagct
ctggtaggttcaagtcaggctaccaagagaaaaggagacagtggttttac
tcagttataaatctaagaaattatgtatgtaaatctgtaaattatgtatg
agagcaaaatacttggcaaggtacatctggaagaaaaatagcagcagtgt
tgttatgggagaaatcaactgctctctaataggatttgagacacaaagat
tctttccacaagaaagactccattcatagcactgtataggtggagcaaca
atatgaactaatcagtaacccccaaagctcgtgactctagctgcatatgt
atcagaagatggccgagtcggccatcagtgggaagagaagcccgtagatc
ttgcaaactttatatgccccagtataggggaacaccagggccaagaaagt
gggagtgggtagggtaggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116110308_116111519
seq2: B6Ng01-091E05.b_46_1222

seq1  GAATTCTTGTGTATTTATACTGACATGTGTAATTATTGGATTTTAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGTATTTATACTGACATGTGTAATTATTGGATTTTAATTTC  50

seq1  TGTGGGCAGCTTGGCCTTAGACTTCATGTTTCACTCTCTTGCTGGGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGCTTGGCCTTAGACTTCATGTTTCACTCTCTTGCTGGGTCTA  100

seq1  TTGTTCAGGAAGGACATACTGTCATTAGGCCATTACACAACTATCAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGGAAGGACATACTGTCATTAGGCCATTACACAACTATCAGTTC  150

seq1  AGGAACTCTGACAGTGTCATAATACTATTTTTAATATCTGTTCAAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCTGACAGTGTCATAATACTATTTTTAATATCTGTTCAAATTCA  200

seq1  ATATTTGTTTTATATAACATTTCCTTTTAGCCTTTATAATACTCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTTTTATATAACATTTCCTTTTAGCCTTTATAATACTCTTCTGG  250

seq1  AAAGTCAGAGTTGTTTTAATCTTTGCATTTCATTTATGAGTCTGACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGAGTTGTTTTAATCTTTGCATTTCATTTATGAGTCTGACAGCT  300

seq1  GAGGGAGTGTGTTGTGTTGGAACCCATGTTGTGAGGATTAAGTCTTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGTGTTGTGTTGGAACCCATGTTGTGAGGATTAAGTCTTGGTC  350

seq1  AATCCTGAGAGTTTCTGGTCCCTTCCTCATAGTTCCTCAATGAGATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGAGAGTTTCTGGTCCCTTCCTCATAGTTCCTCAATGAGATTCCT  400

seq1  TTAGTGGTCTTATACTGCAACTACCTCGAGGTAGCTTCTCTGTGGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTCTTATACTGCAACTACCTCGAGGTAGCTTCTCTGTGGGACAG  450

seq1  TTAAATAAAACCTACTTGATTAGTCCTGAAGATCACTATAGCTTACCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAACCTACTTGATTAGTCCTGAAGATCACTATAGCTTACCTAG  500

seq1  ACAGGTCACTAGAGTAACAAGCCGTGGGTCACAGTGGGTAATGGGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCACTAGAGTAACAAGCCGTGGGTCACAGTGGGTAATGGGAAATG  550

seq1  TTTGACTCTTTTTTTGAAACACATCAACTAAAATTACTGGCCATTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCTTTTTTTGAAACACATCAACTAAAATTACTGGCCATTGTGTC  600

seq1  AGTCTGGCTCCCTATTTCTCTCAGTCCTGTGCATTTTTTAATGACCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCTCCCTATTTCTCTCAGTCCTGTGCATTTTTTAATGACCTTTC  650

seq1  CACGTACCCACTACATGTCACTAAATAACTGAGGACGACAAGTAGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACCCACTACATGTCACTAAATAACTGAGGACGACAAGTAGTAAAA  700

seq1  TATTGATTTCTGTTATATATTTTTCCTAATCATCGAAAGGACGAGCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTTCTGTTATATATTTTTCCTAATCATCGAAAGGACGAGCTCCA  750

seq1  TGTAAATCTTAAAATAAAATGTCATGTTGTACTTTAATACTATTGATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCTTAAAATAAAATGTCATGTTGTACTTTAATACTATTGATGTA  800

seq1  TAGCAATGGACTTTGAGGCTTTTGTCTTTAGCCACTTATATCCTTACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGGACTTTGAGGCTTTTGTCTTTAGCCACTTATATCCTTACATG  850

seq1  TATAATATTTATATATATGTACATAAAGTATATTCTCCATACAAATTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTTATATATATGTACATAAAGTATATTCTCCATACAAATTAAC  900

seq1  ATTCTTCATAAACCAGTGGTTTACATTCTACTTACGAAAACTTTACTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATAAACCAGTGGTTTACATTCTACTTACGAAAACTTTACTGTT  950

seq1  CAAGTACTTCTAGATTTGGTAGGTGTGAACCTTTTAAGATGACCTGTGGA  1000
      ||||||||||||||||||||| ||||||  | ||||||||||||||||||
seq2  CAAGTACTTCTAGATTTGGTA-GTGTGA--CCTTTAAGATGACCTGTGGA  997

seq1  TTATGTTGATATGATAGGCAATATCCTTACTTTATTATTTTCAGAAAAAC  1050
      |||||||||| |||||||||| |||| ||| |||||||||||   |||||
seq2  TTATGTTGAT-TGATAGGCAA-ATCC-TAC-TTATTATTTTC--GAAAAC  1041

seq1  ACATACTCAATGAAAAAGAGAAATTAGAAAAAATTAAATCAAGGAGTGGC  1100
      |||| ||| ||| ||||||| ||||| |||||||| |||||   ||  ||
seq2  ACAT-CTC-ATG-AAAAGAG-AATTA-AAAAAATT-AATCA---AGATGC  1082

seq1  TTTGAGAGGTGAGGACATACTGAGTGGCAGTGTCATTGGTCCGTAATCCT  1150
      ||||| | |||| || |||||||||||||   ||||||   ||| |||||
seq2  TTTGA-AAGTGA-GAAATACTGAGTGGCAAGTTCATTG--TCGT-ATCCT  1127

seq1  CTTTCTGGCAAGGACACCAGCCCCTGCATTGAATCATCAGAGCCATCTTA  1200
      |||| |||| || ||| ||| ||||||| || ||||| ||  | |     
seq2  CTTT-TGGC-AGAACA-CAG-CCCTGCA-TGGATCATAAGCACTA-----  1167

seq1  ATAGCTTACTTA  1212
        ||||||||||
seq2  --AGCTTACTTA  1177


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