BAC Information

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BAC

Clone NameB6Ng01-091K16
Chromosome13 (Build37)
Map Location 5,735,104 - 5,863,134
singlet/doubletdoublet
Overlap gene1700016G22Rik, Klf6
Upstream geneEG432723
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091K16.bB6Ng01-091K16.g
ACCDH903630DH903631
length1,1241,106
definitionDH903630|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K16, 5' end.DH903631|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,861,978 - 5,863,134)(5,735,104 - 5,736,215)
sequence
gaattcttccagagtagctatctgctattgtaaaggatggaaaggggaaa
ttactccctggcccttctgggagtcccacaatgaacaaggactttatctc
ctggccaagggtacaacagtatgagtcatcactcctttttctttcacgca
atgccaaaggagacttccttttgaaattctgacctgcagccaaataagga
cccggctcaaatatacatgcagtgtgccataacagggtgccccttcccag
ccctgccaccaacctttcaaggagctacacactgcagagatcagcaatcc
cctctccccaccatctcaaactttctagccactggaaaagaaaaacggta
ggaaagattttaggattcaattatgtaggccctgatttttcactagcttt
gcctgcatgcccatataaggccgtctgtgcctctgtgtattctattctac
agacagaaatttcggcactaaactgcaacaaaaaaatgttatcagggtac
agaccatcttgagcacaggctaccagcaaaagggctaaagcttactaaac
aatgtgccttctatcacagtatacacatcctaagtcccggcctcacacag
caagcacaagcaagctaaggaagagggggtgcctgttttccatttccccc
caaaattcgatgtctgttacagtgtgtacagtattaggaatcgaagcggc
gatacctattattgatgttccaaagaaatggcgaagacatttatgaagat
cttgttaaactttaatcaactggctaatttaaaatcgccagtatgctgat
gagcagtggggacctgatcgaagctctctgggagtttaaaaggctctgaa
ggggaccaggagccaagtctggctagttgcccaatcccaaatgcctaaag
gaaactactaagatcaatttcaatcacgtcccaggagcagcttctttgag
gagaaaatggagagggggagagaacgcagagaggattgtgaacattagcg
catggggagtttcagccaacacttcgcttttcctggttaaagctgggagg
tgtgaaaccgacggattattgatctgctatcactgagaaaaaaataccag
aacgtagagacgccgatcatcgtt

gaattcatgcctgtccctgtcactgttccgacaagaaatggcacaaataa
catctatgtgctctctctccctcttccctccctctctcccttctttccaa
ttctccccctttcttctcctcttcatcttatttttgtttctatttatctc
tcttcttttccttccaagaactatgtgctcttaagatgagtgagataaat
ggtaaaattttggggggaaaagtagatagaatgaacatattactggggaa
gcatttgggcacagggataatgacagcttctccttgcagctgaagacctt
gagaacagcagccatcaagcctcgcctagccttggtgggaaaggatgtgc
ctagccttgcagagacttgatgtgccagagtgcagggatacccatcacca
ctacccccatctgctcagagaagaagcagatgggaagatgggggcaagga
ttgtgggacggggtcaccaggggtgaggcagcaagctgaatatgcagtga
ataagtcaaataaataaataaaagccagcaaaaggcttgcacttgtgagt
ctctccattggaggtcaagaaatagagacaggaacggtctcaaccaagag
aagccatctgaggagcttcctgaattgaccccccgttagccttcactgca
gtatctattgctcatgtccataggcgacagtggcaacaccaaaacccctg
actcagaccatgccatcgtctttgctgagataatcagggagtatctttag
ggaaaatactaggacagatgacacaggtctctatctgggttcctttttgt
tctgcacagagagaagtttatgaatttacaaggaaacgccatgggttgat
atggctttatctctttcaagttgagcaattctcaagtgggcagagagatt
aaacgcaaacatcatatcacctgtaaaatatgctcctcttccttgcggca
ttttctacaggctcttcctaccagaaaatacacaagacaaggcaatgata
ggtacatagttctgaagcaatggagatcagtgaggtatgaacactgccct
ccaaacaaaggagcagaacttttgaaattcagagttcattggacaaaggc
accagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5861978_5863134
seq2: B6Ng01-091K16.b_47_1170 (reverse)

seq1  AACGATGATTCTGTGGCCGTCTCTCTACCCTTCTGGGTATTTTTTTTCCT  50
      ||||||||     | | |||||||    | |||| |||||||||||  ||
seq2  AACGATGA-----TCGGCGTCTCT---ACGTTCT-GGTATTTTTTT--CT  39

seq1  CCAAGTGAATTAGCAGATCAAATAAATTCCGTCGGTTTCACAACCTCCCA  100
      |  |||||  ||||||||| |||||  |||||||||||||| ||||||||
seq2  C--AGTGA--TAGCAGATC-AATAA--TCCGTCGGTTTCAC-ACCTCCCA  81

seq1  GGCTTTAAAACCCAGGAAAAGCGAAGTGTTGGCTGAAACCTCCCCATGCC  150
       |||||||   ||||||||||||||||||||||||||| |||||||||| 
seq2  -GCTTTAA---CCAGGAAAAGCGAAGTGTTGGCTGAAA-CTCCCCATGC-  125

seq1  GGCTTAATTGTTCACAATCCTCTCTGCCTTTCTCTCCCCCTCTCCATTTT  200
       |||  | |||||||||||||||||| | |||||||||||||||||||||
seq2  -GCT--AATGTTCACAATCCTCTCTG-CGTTCTCTCCCCCTCTCCATTTT  171

seq1  TCCTCCTCAAAGAAGCTGCTCCCTGGGACGTGATTGAAATTGATCTTAGT  250
        |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  --CTCCTCAAAGAAGCTGCT-CCTGGGACGTGATTGAAATTGATCTTAGT  218

seq1  AGTTTCCTTTAGGCATTTGGGATTTGGGCAACTAGCCAGACTTGGCTCCT  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTTCCTTTAGGCATTTGGGA-TTGGGCAACTAGCCAGACTTGGCTCCT  267

seq1  GGTCCCCTTCAGAGCCTTTTAAACTCCCAGAGAGCTTCGATCAGGTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTTCAGAGCCTTTTAAACTCCCAGAGAGCTTCGATCAGGTCCCC  317

seq1  ACTGCTCATCAGCATACTGGCGATTTTAAATTAGCCAGTTGATTAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCATCAGCATACTGGCGATTTTAAATTAGCCAGTTGATTAAAGTT  367

seq1  TAACAAGATCTTCATAAATGTCTTCGCCATTTCTTTGGAACATCAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATCTTCATAAATGTCTTCGCCATTTCTTTGGAACATCAATAAT  417

seq1  AGGTATCGCCGCTTCGATTCCTAATACTGTACACACTGTAACAGACATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCGCCGCTTCGATTCCTAATACTGTACACACTGTAACAGACATCG  467

seq1  AATTTTGGGGGGAAATGGAAAACAGGCACCCCCTCTTCCTTAGCTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGGGGGAAATGGAAAACAGGCACCCCCTCTTCCTTAGCTTGCTT  517

seq1  GTGCTTGCTGTGTGAGGCCGGGACTTAGGATGTGTATACTGTGATAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTGTGTGAGGCCGGGACTTAGGATGTGTATACTGTGATAGAAG  567

seq1  GCACATTGTTTAGTAAGCTTTAGCCCTTTTGCTGGTAGCCTGTGCTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGTTTAGTAAGCTTTAGCCCTTTTGCTGGTAGCCTGTGCTCAAG  617

seq1  ATGGTCTGTACCCTGATAACATTTTTTTGTTGCAGTTTAGTGCCGAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGTACCCTGATAACATTTTTTTGTTGCAGTTTAGTGCCGAAATT  667

seq1  TCTGTCTGTAGAATAGAATACACAGAGGCACAGACGGCCTTATATGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTAGAATAGAATACACAGAGGCACAGACGGCCTTATATGGGCA  717

seq1  TGCAGGCAAAGCTAGTGAAAAATCAGGGCCTACATAATTGAATCCTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAAAGCTAGTGAAAAATCAGGGCCTACATAATTGAATCCTAAAA  767

seq1  TCTTTCCTACCGTTTTTCTTTTCCAGTGGCTAGAAAGTTTGAGATGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTACCGTTTTTCTTTTCCAGTGGCTAGAAAGTTTGAGATGGTGG  817

seq1  GGAGAGGGGATTGCTGATCTCTGCAGTGTGTAGCTCCTTGAAAGGTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGGATTGCTGATCTCTGCAGTGTGTAGCTCCTTGAAAGGTTGGT  867

seq1  GGCAGGGCTGGGAAGGGGCACCCTGTTATGGCACACTGCATGTATATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCTGGGAAGGGGCACCCTGTTATGGCACACTGCATGTATATTTG  917

seq1  AGCCGGGTCCTTATTTGGCTGCAGGTCAGAATTTCAAAAGGAAGTCTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGTCCTTATTTGGCTGCAGGTCAGAATTTCAAAAGGAAGTCTCCT  967

seq1  TTGGCATTGCGTGAAAGAAAAAGGAGTGATGACTCATACTGTTGTACCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTGCGTGAAAGAAAAAGGAGTGATGACTCATACTGTTGTACCCT  1017

seq1  TGGCCAGGAGATAAAGTCCTTGTTCATTGTGGGACTCCCAGAAGGGCCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGAGATAAAGTCCTTGTTCATTGTGGGACTCCCAGAAGGGCCAG  1067

seq1  GGAGTAATTTCCCCTTTCCATCCTTTACAATAGCAGATAGCTACTCTGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTTCCCCTTTCCATCCTTTACAATAGCAGATAGCTACTCTGGA  1117

seq1  AGAATTC  1157
      |||||||
seq2  AGAATTC  1124


seq1: chr13_5735104_5736215
seq2: B6Ng01-091K16.g_66_1171

seq1  GAATTCATGCCTGTCCCTGTCACTGTTCCGACAAGAAATGGCACAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTGTCCCTGTCACTGTTCCGACAAGAAATGGCACAAATAA  50

seq1  CATCTATGTGCTCTCTCTCCCTCTTCCCTCCCTCTCTCCCTTCTTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGTGCTCTCTCTCCCTCTTCCCTCCCTCTCTCCCTTCTTTCCAA  100

seq1  TTCTCCCCCTTTCTTCTCCTCTTCATCTTATTTTTGTTTCTATTTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCCTTTCTTCTCCTCTTCATCTTATTTTTGTTTCTATTTATCTC  150

seq1  TCTTCTTTTCCTTCCAAGAACTATGTGCTCTTAAGATGAGTGAGATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTCCTTCCAAGAACTATGTGCTCTTAAGATGAGTGAGATAAAT  200

seq1  GGTAAAATTTTGGGGGGAAAAGTAGATAGAATGAACATATTACTGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATTTTGGGGGGAAAAGTAGATAGAATGAACATATTACTGGGGAA  250

seq1  GCATTTGGGCACAGGGATAATGACAGCTTCTCCTTGCAGCTGAAGACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGGCACAGGGATAATGACAGCTTCTCCTTGCAGCTGAAGACCTT  300

seq1  GAGAACAGCAGCCATCAAGCCTCGCCTAGCCTTGGTGGGAAAGGATGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCAGCCATCAAGCCTCGCCTAGCCTTGGTGGGAAAGGATGTGC  350

seq1  CTAGCCTTGCAGAGACTTGATGTGCCAGAGTGCAGGGATACCCATCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGCAGAGACTTGATGTGCCAGAGTGCAGGGATACCCATCACCA  400

seq1  CTACCCCCATCTGCTCAGAGAAGAAGCAGATGGGAAGATGGGGGCAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCATCTGCTCAGAGAAGAAGCAGATGGGAAGATGGGGGCAAGGA  450

seq1  TTGTGGGACGGGGTCACCAGGGGTGAGGCAGCAAGCTGAATATGCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGACGGGGTCACCAGGGGTGAGGCAGCAAGCTGAATATGCAGTGA  500

seq1  ATAAGTCAAATAAATAAATAAAAGCCAGCAAAAGGCTTGCACTTGTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAAATAAATAAATAAAAGCCAGCAAAAGGCTTGCACTTGTGAGT  550

seq1  CTCTCCATTGGAGGTCAAGAAATAGAGACAGGAACGGTCTCAACCAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATTGGAGGTCAAGAAATAGAGACAGGAACGGTCTCAACCAAGAG  600

seq1  AAGCCATCTGAGGAGCTTCCTGAATTGACCCCCCGTTAGCCTTCACTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCTGAGGAGCTTCCTGAATTGACCCCCCGTTAGCCTTCACTGCA  650

seq1  GTATCTATTGCTCATGTCCATAGGCGACAGTGGCAACACCAAAACCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATTGCTCATGTCCATAGGCGACAGTGGCAACACCAAAACCCCTG  700

seq1  ACTCAGACCATGCCATCGTCTTTGCTGAGATAATCAGGGAGTATCTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACCATGCCATCGTCTTTGCTGAGATAATCAGGGAGTATCTTTAG  750

seq1  GGAAAATACTAGGACAGATGACACAGGTCTCTATCTGGGTTCC-TTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAAAATACTAGGACAGATGACACAGGTCTCTATCTGGGTTCCTTTTTGT  800

seq1  CCTGCACAGAGAGAAGTTCATGAATTTACAAGGAAACGCCATGGGTTGAT  849
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGCACAGAGAGAAGTTTATGAATTTACAAGGAAACGCCATGGGTTGAT  850

seq1  ATGGC-TTATCTCTTTCAAGTTGAAGCAATTCTCAAAGTGGGCAGAGAGA  898
      ||||| ||||||||||||||||| |||||||||| |||||||||||||||
seq2  ATGGCTTTATCTCTTTCAAGTTG-AGCAATTCTC-AAGTGGGCAGAGAGA  898

seq1  TTAAACGCAAACATCATATCACCTGTAAAATATGCTCCTCTTCCTTGCGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGCAAACATCATATCACCTGTAAAATATGCTCCTCTTCCTTGCGG  948

seq1  CATTTTCTCACAGGCTCTTCCATACCAAGAAAATACACAAGACAAGGCAA  998
      |||||||| |||||||||||| |||| |||||||||||||||||||||||
seq2  CATTTTCT-ACAGGCTCTTCC-TACC-AGAAAATACACAAGACAAGGCAA  995

seq1  TGATAAGGTACATAGTTCTGAAGCAATGGAGATCAAGTGAGGTATGAACA  1048
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAT-AGGTACATAGTTCTGAAGCAATGGAGATC-AGTGAGGTATGAACA  1043

seq1  CTGCCCTCAAAACAAAAGGAGCAG-ACTTATGAATTCAAGAGTTCATTGA  1097
      |||||||| |||| |||||||||| |||| |||| |  ||||||||||| 
seq2  CTGCCCTCCAAAC-AAAGGAGCAGAACTTTTGAAATTCAGAGTTCATTGG  1092

seq1  ACAAAGGCACACAGG  1112
      |||||||||| ||||
seq2  ACAAAGGCAC-CAGG  1106


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