BAC Information

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BAC

Clone NameB6Ng01-092A22
Chromosome13 (Build37)
Map Location 5,390,190 - 5,518,540
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092A22.bB6Ng01-092A22.g
ACCDH903921DH903922
length1,135958
definitionDH903921|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A22, 5' end.DH903922|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,390,190 - 5,391,341)(5,517,583 - 5,518,540)
sequence
gaattctatattgatgcaacttcaattatcttgtttttcatattaacttt
ttggtgcaagctggaaatgcttacaggttttcttgtccttcatcttgttg
gcatcacctgagtattctccaaagtgttccatatgctattttaacccatc
aaacctgtggcccatattataataccctcttgtctcagtatctgactgtc
atattttcttcacaatagctctgtatgctctgtgtgaatatacttgaaac
tgtggccctaaagtgtgcatgctcaagtacacaccccctaaaacgggtgc
ttttctacatcagtacatataagctctttcaataaaatgttcaacttttt
ttgttcaatataacattattttagtaaaaactcatatttctttagtgaag
atagatactaaatctttcttcattcttttttcataacatttcactttaat
tccaatgctttatcattcatatcaccattaccaccaccatcatcatcatt
gccatcatcatcattgtcattactcataatgtgaaaatagtatgtgcatg
ttgttttccactgggtcattagtaagttaccaaaagcaaagtgaccatct
ctaagaagctaccaactcacaatagctcttcagttaagaataggacctat
ataccattcataatggaagttttagcattttttggttgtatactggtaaa
ttcaacttctctataatttcctggtcctggttggttaggttttgctatta
tcaggattgagttacatgtttctgaagtctcttctgtaattttccatcta
tttgatttttaatttacttcagctataataacactgatgagtattggggt
gtctcagagcaatagatgattaacagttctttgctacattacaacttaag
tttcaatatttttatattaagttgctctataacaacttaagtgcagaggt
agtgtatgggtgagaagaccaattttgatcactaagaaggaactttgtat
tttgaaattctcccagagcacacagctctgtgagcttttttcttaagtag
ttagcaataattttctgaactaacagattgaaatactctttttatgtgtc
gatagagtattaatattcattccatgctattaaaa

gaattcttctaagctgggttcttgctttttgattgggggcttgttgacct
ctagggggacatacctgaggaataccccagtgacctgacacctctcagtg
ttactcctttagtgagtgggaggatgatgggacagtgcccaccagtgatt
gtaggtattaggacttcattgctgtccatttatgagatgggctattctag
atgtgatgaaaaagtgctcagtggttaagagctcttcctactcatgtaga
ggatctaggttcaatatccagaagccaaatcaggtggcacagaaccatag
gttgctccagttccaggagatgcaagtctttctgctggatatagacaagg
aggaatacacacgtatgcatgcaataaaatcaatcttttaaaaacacgag
ttaagtgagttaagtaaatggaattatttcagactatatgtctatgtaag
cacatatctgtgaaggtaccctttcctgtaaaattctacagacagtgact
gatcatgattaaaatttaccatcgtataaataaggataaagggatatctt
aatatatataccttcatataaagtggcagttgactaaactaataagttct
ttatttgaaaactatattgattgaatatagattttcagattgaaaaagga
tgagcacactatattgaacaactttactttcctgacctctctagtctaag
aaaagaatgttcctctttgttaaaatgggggcaaaaattattagaggtaa
ccataagaaatgtgataatacaggactcagcacactcttcagaagtgata
agactacacttgctctggtgtcacatttagcctctggtgcttttggtctt
tttataaattcactgtggctagctctcattttccagcaataattttcatg
ccatttttcaagtgttttctgtatttcgtctacctttccttttttttggg
gggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5390190_5391341
seq2: B6Ng01-092A22.b_43_1177

seq1  GAATTCTATATTGATGCAACTTCAATTATCTTGTTTTTCATATTAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTGATGCAACTTCAATTATCTTGTTTTTCATATTAACTTT  50

seq1  TTGGTGCAAGCTGGAAATGCTTACAGGTTTTCTTGTCCTTCATCTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCAAGCTGGAAATGCTTACAGGTTTTCTTGTCCTTCATCTTGTTG  100

seq1  GCATCACCTGAGTATTCTCCAAAGTGTTCCATATGCTATTTTAACCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCTGAGTATTCTCCAAAGTGTTCCATATGCTATTTTAACCCATC  150

seq1  AAACCTGTGGCCCATATTATAATACCCTCTTGTCTCAGTATCTGACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTGGCCCATATTATAATACCCTCTTGTCTCAGTATCTGACTGTC  200

seq1  ATATTTTCTTCACAATAGCTCTGTATGCTCTGTGTGAATATACTTGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTCACAATAGCTCTGTATGCTCTGTGTGAATATACTTGAAAC  250

seq1  TGTGGCCCTAAAGTGTGCATGCTCAAGTACACACCCCCTAAAACGGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCTAAAGTGTGCATGCTCAAGTACACACCCCCTAAAACGGGTGC  300

seq1  TTTTCTACATCAGTACATATAAGCTCTTTCAATAAAATGTTCAACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACATCAGTACATATAAGCTCTTTCAATAAAATGTTCAACTTTTT  350

seq1  TTGTTCAATATAACATTATTTTAGTAAAAACTCATATTTCTTTAGTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAATATAACATTATTTTAGTAAAAACTCATATTTCTTTAGTGAAG  400

seq1  ATAGATACTAAATCTTTCTTCATTCTTTTTTCATAACATTTCACTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACTAAATCTTTCTTCATTCTTTTTTCATAACATTTCACTTTAAT  450

seq1  TCCAATGCTTTATCATTCATATCACCATTACCACCACCATCATCATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTTTATCATTCATATCACCATTACCACCACCATCATCATCATT  500

seq1  GCCATCATCATCATTGTCATTACTCATAATGTGAAAATAGTATGTGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCATCATCATTGTCATTACTCATAATGTGAAAATAGTATGTGCATG  550

seq1  TTGTTTTCCACTGGGTCATTAGTAAGTTACCAAAAGCAAAGTGACCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCACTGGGTCATTAGTAAGTTACCAAAAGCAAAGTGACCATCT  600

seq1  CTAAGAAGCTACCAACTCACAATAGCTCTTCAGTTAAGAATAGGACCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGCTACCAACTCACAATAGCTCTTCAGTTAAGAATAGGACCTAT  650

seq1  ATACCATTCATAATGGAAGTTTTAGCATTTTTTGGTTGTATACTGGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTCATAATGGAAGTTTTAGCATTTTTTGGTTGTATACTGGTAAA  700

seq1  TTCAACTTCTCTATAATTTCCTGGTCCTGGTTGGTTAGGTTTTGCTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTCTCTATAATTTCCTGGTCCTGGTTGGTTAGGTTTTGCTATTA  750

seq1  TCAGGATTGAGTTACATGTTTCTGAAGTCTCTTCTGTAATTTTCCATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTGAGTTACATGTTTCTGAAGTCTCTTCTGTAATTTTCCATCTA  800

seq1  TTTGATTTTTAATTTACTTCAGCTATAATAACACTGATGAGTATTGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTTAATTTACTTCAGCTATAATAACACTGATGAGTATTGGGGT  850

seq1  GTCTCAGAGCAATAGATGATTAACAGTTCTTTGCTACATTACAACTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGCAATAGATGATTAACAGTTCTTTGCTACATTACAACTTAAG  900

seq1  TTTCAATATTTTTATATTAAGTTGCTCTATAACAACTTAAGTGCAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTTTTATATTAAGTTGCTCTATAACAACTTAAGTGCAGAGGT  950

seq1  AGTGTATGGGTGAGAAGAACCAATTTTGATCACTAAGAAGGAACTTTGTA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTGTATGGGTGAGAAG-ACCAATTTTGATCACTAAGAAGGAACTTTGTA  999

seq1  TTTTGAAATTCTCCCAAGAGCACACAGCTCTTGTGAGCTTTTCTCTTAAA  1050
      ||||||||||||||| |||||||||||||| ||||||||||| |||| ||
seq2  TTTTGAAATTCTCCC-AGAGCACACAGCTC-TGTGAGCTTTTTTCTT-AA  1046

seq1  GTAGTTTAGGCAATAATTTTCTGAAACTAACAGATATGAAATACTCTTTT  1100
      ||||||   |||||||||||||| ||||||||||| ||||||||||||||
seq2  GTAGTT--AGCAATAATTTTCTG-AACTAACAGAT-TGAAATACTCTTTT  1092

seq1  TAATGTGTTCAGAAAAAGAGTATTAAAATTATCATTCCCATGCTAATTAA  1150
      | ||||||      | |||||||||| ||  ||||| ||||||| |||||
seq2  T-ATGTGT----CGATAGAGTATTAATAT--TCATT-CCATGCT-ATTAA  1133

seq1  AA  1152
      ||
seq2  AA  1135


seq1: chr13_5517583_5518540
seq2: B6Ng01-092A22.g_70_1027 (reverse)

seq1  CCCCCCCCCCCAAAAAAAAGGAAAGGTAGACGAAATACAGAAAACACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCAAAAAAAAGGAAAGGTAGACGAAATACAGAAAACACTTG  50

seq1  AAAAATGGCATGAAAATTATTGCTGGAAAATGAGAGCTAGCCACAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCATGAAAATTATTGCTGGAAAATGAGAGCTAGCCACAGTGAA  100

seq1  TTTATAAAAAGACCAAAAGCACCAGAGGCTAAATGTGACACCAGAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAAGACCAAAAGCACCAGAGGCTAAATGTGACACCAGAGCAAG  150

seq1  TGTAGTCTTATCACTTCTGAAGAGTGTGCTGAGTCCTGTATTATCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTTATCACTTCTGAAGAGTGTGCTGAGTCCTGTATTATCACATT  200

seq1  TCTTATGGTTACCTCTAATAATTTTTGCCCCCATTTTAACAAAGAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGTTACCTCTAATAATTTTTGCCCCCATTTTAACAAAGAGGAAC  250

seq1  ATTCTTTTCTTAGACTAGAGAGGTCAGGAAAGTAAAGTTGTTCAATATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTTAGACTAGAGAGGTCAGGAAAGTAAAGTTGTTCAATATAG  300

seq1  TGTGCTCATCCTTTTTCAATCTGAAAATCTATATTCAATCAATATAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCATCCTTTTTCAATCTGAAAATCTATATTCAATCAATATAGTTT  350

seq1  TCAAATAAAGAACTTATTAGTTTAGTCAACTGCCACTTTATATGAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAAGAACTTATTAGTTTAGTCAACTGCCACTTTATATGAAGGTA  400

seq1  TATATATTAAGATATCCCTTTATCCTTATTTATACGATGGTAAATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAAGATATCCCTTTATCCTTATTTATACGATGGTAAATTTTAA  450

seq1  TCATGATCAGTCACTGTCTGTAGAATTTTACAGGAAAGGGTACCTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCAGTCACTGTCTGTAGAATTTTACAGGAAAGGGTACCTTCACA  500

seq1  GATATGTGCTTACATAGACATATAGTCTGAAATAATTCCATTTACTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGCTTACATAGACATATAGTCTGAAATAATTCCATTTACTTAAC  550

seq1  TCACTTAACTCGTGTTTTTAAAAGATTGATTTTATTGCATGCATACGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAACTCGTGTTTTTAAAAGATTGATTTTATTGCATGCATACGTGT  600

seq1  GTATTCCTCCTTGTCTATATCCAGCAGAAAGACTTGCATCTCCTGGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTCCTTGTCTATATCCAGCAGAAAGACTTGCATCTCCTGGAACT  650

seq1  GGAGCAACCTATGGTTCTGTGCCACCTGATTTGGCTTCTGGATATTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAACCTATGGTTCTGTGCCACCTGATTTGGCTTCTGGATATTGAAC  700

seq1  CTAGATCCTCTACATGAGTAGGAAGAGCTCTTAACCACTGAGCACTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCTCTACATGAGTAGGAAGAGCTCTTAACCACTGAGCACTTTTT  750

seq1  CATCACATCTAGAATAGCCCATCTCATAAATGGACAGCAATGAAGTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATCTAGAATAGCCCATCTCATAAATGGACAGCAATGAAGTCCTA  800

seq1  ATACCTACAATCACTGGTGGGCACTGTCCCATCATCCTCCCACTCACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACAATCACTGGTGGGCACTGTCCCATCATCCTCCCACTCACTAA  850

seq1  AGGAGTAACACTGAGAGGTGTCAGGTCACTGGGGTATTCCTCAGGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAACACTGAGAGGTGTCAGGTCACTGGGGTATTCCTCAGGTATGT  900

seq1  CCCCCTAGAGGTCAACAAGCCCCCAATCAAAAAGCAAGAACCCAGCTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAGAGGTCAACAAGCCCCCAATCAAAAAGCAAGAACCCAGCTTAG  950

seq1  AAGAATTC  958
      ||||||||
seq2  AAGAATTC  958


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