BAC Information

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BAC

Clone NameB6Ng01-093B14
Chromosome12 (Build37)13 (Build37)
Map Location 77,284,407 - 77,285,1883,371,798 - 3,372,703
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957
Downstream geneTex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093B14.bB6Ng01-093B14.g
ACCDH904678DH904679
length933982
definitionDH904678|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B14, 5' end.DH904679|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,284,407 - 77,285,188)(3,371,798 - 3,372,703)
sequence
gaattcagaaatcctcccatccctgcctccctaggactgggaataaaggc
ttgagccaccactcccgggtatatttaatttttttaatttttaaatttta
tttgttttatttatttttctttttttcaagatgtggtttctctgtgtaac
cctggctgtcctggaactcactctgtagaccaggctggccttgaaccatt
aatctgaacgtttttgcttcccaaatgctgggattagaggcatgtgacac
cactgcccggattaattttatttgtttgaaaataccttccttccttcctt
ccttccttccttccttccttccttcctccttccttcctcccttttctttc
tttctttctttctttctttctttctttctttctttctttctttctctctc
tctttctctctttctattagttttttttttttttttgtttttttggagat
atggtttctctagtcctagctgacttgtaagccagggtgaccttgaaagc
agaaatctgccttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttcttccaaaaatgcttagggacat
cactctacctccagccagagaagagtctcaagaaatgtatgtgagcttgc
tttgctttgttttgtggggccaaatgtgacagacatttcttttggctttg
tgtgttttgccagccagctctcttgctctgctcactcactcactcactca
ctcactcactcactcactcactcattagcttgcttactgtggttttcact
tctatctatctctgcagggttccaagactgctctttggtattcaaacggg
agccgctttggactgactggctgccttctccctctccccctcctcccctt
tgcttcgatttatttatatagtagtacactgta
gaattccttaggaacatgtccttgttgtatacttatcctgctcccattaa
ttggggtactctactgtggcaagggtacttgccatgtcttaacttgaaaa
ccagaaagtcagttgtgcatgtacaagtctctttcttccaagtaagatgt
cagttcccagggaggcctcgagaacttatactttactcactcacacccta
ctcaaaatagaagtctggttcgaagtagtctctgcactgaatcggtggtg
cgggtgtctctcttttgttggggtgcgggggtccgtccccagggcagctt
ctaagagcaaatgccagaaaagtgtatacatgggtttgtgcaggaaatgc
tgctgggtggtcagtttgggtccaagcctattgcagataactatagaaca
aaggaagcttctattctgattggtttccgaggacacatccaacaagaata
tgtagtcaattctggcaataatggcagaaacaagctatgagaaagtgtcc
ttataatagtagttaacagcacaaaatggcaggctagccaggtaagaggt
tacctaggccttatctaatctgaagtaggccttcacattccatctaggcc
ttaatattttacctataccttaacagccagcagttttgccctctgagcca
tcgcacatgcatgttcagatcaatgaatatcttttctctgtattcattta
tttatgagagacaaagtctctgtacatggtgcaaaaacatacaagacaga
ccaggccggcctctcaagtaagttctgcctctgcctcttcccagtgctga
gatcaagacagtgtttttctgtgttgccctcgctgtcctggaacttactc
tgtagaccaggctggcttggaacgcagaaatttgtctgccttctgcccac
aaagtagtatgttaggactaaaggcatgttccaccactggcccgggcagt
cttatacttttcaatgccggatgaattcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77284407_77285188
seq2: B6Ng01-093B14.b_182_462 (reverse)

seq1  AGAAGGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAGAAAGAGAGAAAG  50
      |||| |||||||||||||||||| | | ||| ||||||||||| ||||||
seq2  AGAAAGAGAGAAAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  50

seq1  AAAGAAAGAAAGAAAGAAAGAAA------GAAAGAA--AGAAAGAAAGAA  92
      |||||||||||||||||||||||      ||| |||  || ||| ||| |
seq2  AAAGAAAGAAAGAAAGAAAGAAAAGGGAGGAAGGAAGGAGGAAGGAAGGA  100

seq1  AGGAAGAAAGAAAGAAAGAAAGAGGGGCTGGTGAGATGGCTCAGTGGGTA  142
      |||||| ||| ||| ||| |||   ||  |||   ||     |     ||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGT---ATTTTCAAACAAATA  147

seq1  AGAGCA--CCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAA  190
      | |  |  || | | |   |  || | | |      || |||||||||| 
seq2  AAATTAATCCGGGCAGTGGTGTCACATGCC------TCTAATCCCAGCA-  190

seq1  CCACATGGTGGCTCACAACCATCC---GTAA-----CAAGACCTGATGCC  232
           | | |   || || | | |    |||     |||| || |    |
seq2  ----TTTGGGAAGCAAAAACGTTCAGATTAATGGTTCAAGGCCAG----C  232

seq1  CTCTTCT----GGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAAT  278
      ||  |||     ||| ||   | ||||||  ||| |   ||||| | |  
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGC--CAGGG---TTACACAGA--  275

seq1  GAATAAATAAATCTTTAAAAAAAAAAGAAGAAGAAAGAAAGAAAGAAAGG  328
      |||                                               
seq2  GAAACC--------------------------------------------  281

seq1  CAAGATGGCTCAGCAGGTAAGAGTACTGACTGCTGTTCTGAAGGTCCTGA  378
                                                        
seq2  --------------------------------------------------  281

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGAT  428
                                                        
seq2  --------------------------------------------------  281

seq1  CTGATGCCCTCTTCTAGTGTGTCCGAAGATAGCTACAGTGTACTTAAGTA  478
                                                        
seq2  --------------------------------------------------  281

seq1  TAATAATAAATAAATCTTTGGGGCTGAGCGAGTGGAGTTGACTGGAGCAA  528
                                                        
seq2  --------------------------------------------------  281

seq1  GCAGAGGTCCAAAAATTCAATTCCCAACAACCACACGAAGTCTCACAACC  578
                                                        
seq2  --------------------------------------------------  281

seq1  ATCTGTACAACTACAGTGTACTCACATACATTAAATAAATAAATAAATAT  628
                                                        
seq2  --------------------------------------------------  281

seq1  TTTTTTTTTTTAAAAAAGAAAGAAAGAGCCAGGCGTGGTGGCGCACGTCT  678
                                                        
seq2  --------------------------------------------------  281

seq1  TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGG  728
                                                        
seq2  --------------------------------------------------  281

seq1  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA  778
                                                        
seq2  --------------------------------------------------  281

seq1  AACC  782
          
seq2  ----  281

seq1: chr13_3371798_3372703
seq2: B6Ng01-093B14.g_150_1049

seq1  CATGTCTTAACTTGTGAACCAGAAAGTCACTTGCCCACGTACAAGTCTCT  50
      ||||||||||||||  ||||||||||||| |||  || ||||||||||||
seq2  CATGTCTTAACTTGAAAACCAGAAAGTCAGTTGTGCATGTACAAGTCTCT  50

seq1  TCCTTCCAAGTAAGATGTCAGTTCCGTGGGAGGCCTTGGGAACTTATACT  100
      | |||||||||||||||||||||||  ||||||||| | |||||||||||
seq2  TTCTTCCAAGTAAGATGTCAGTTCCCAGGGAGGCCTCGAGAACTTATACT  100

seq1  TTACTCACTCACACCCTACTCAAAATAGAAGTCGGATTCCAAGTAGTCTG  150
      ||||||||||||||||||||||||||||||||| | ||| ||||||||| 
seq2  TTACTCACTCACACCCTACTCAAAATAGAAGTCTGGTTCGAAGTAGTCTC  150

seq1  TACACTGAATCAGTGGTGTGGGTGTCTCTCTTTTGTTGGGGGGCGGGGGG  200
      | ||||||||| |||||| |||||||||||||||||||||| ||||||  
seq2  TGCACTGAATCGGTGGTGCGGGTGTCTCTCTTTTGTTGGGGTGCGGGG--  198

seq1  TGTCCATCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTATAC  250
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTCCGTCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTATAC  247

seq1  ATGGGTGGGTGCAGGAAATACTGCTGGGTGGTCAGTTTGGATCCAAGCAT  300
      ||||||  ||||||||||| |||||||||||||||||||| ||||||| |
seq2  ATGGGTTTGTGCAGGAAATGCTGCTGGGTGGTCAGTTTGGGTCCAAGCCT  297

seq1  ATTGCAGATAACTATAGAACAAAGGAAGCAGTTCGATTGGCCTCTCTCGT  350
      |||||||||||||||||||||||||||||  ||| |||           |
seq2  ATTGCAGATAACTATAGAACAAAGGAAGC--TTCTATT----------CT  335

seq1  GATTGGTTTCCGAGGACACATCCAACGAGAATATGTAATCAATTCTGGCA  400
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  GATTGGTTTCCGAGGACACATCCAACAAGAATATGTAGTCAATTCTGGCA  385

seq1  GTAATGGCAGAAACTAGATATGAGAAAGTGTCCTTATAATAGTAGTTAAC  450
       ||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  ATAATGGCAGAAACAAGCTATGAGAAAGTGTCCTTATAATAGTAGTTAAC  435

seq1  AGCACCAAATGGCAGGCTAGCCAGGTAAGAGGTTACCTAGCCCTTATCTA  500
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCACAAAATGGCAGGCTAGCCAGGTAAGAGGTTACCTAGGCCTTATCTA  485

seq1  ATCTGACGTAAGCCTTCACATTCCATCTAGGCCTTAATATTTTACCTATA  550
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTAGGCCTTCACATTCCATCTAGGCCTTAATATTTTACCTATA  535

seq1  CCTTAACAGCCAGCAGTTTTGCCCTCTGAGTCATCGCACATGCATGTATA  600
      |||||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  CCTTAACAGCCAGCAGTTTTGCCCTCTGAGCCATCGCACATGCATGTTCA  585

seq1  GATCAATGAATA-CCTTTCTCTGTATTCATTTATTTATGAGAGACCAAGT  649
      |||||||||||| | |||||||||||||||||||||||||||||| ||||
seq2  GATCAATGAATATCTTTTCTCTGTATTCATTTATTTATGAGAGACAAAGT  635

seq1  CTCTGTACATGGTGCAAAAACATACAAGACAGACCAGGCTGGCCTCTCAA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTGTACATGGTGCAAAAACATACAAGACAGACCAGGCCGGCCTCTCAA  685

seq1  ATAAGTTCTGCCTCTGCCTCTCCCCAGTGCTGAGATCAAGACAGTGTTTT  749
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAAGTTCTGCCTCTGCCTCTTCCCAGTGCTGAGATCAAGACAGTGTTTT  735

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAAACCAGGCTGGCC  799
      ||||||| ||||| ||||||||||||||||||||||| ||||||||||| 
seq2  TCTGTGTTGCCCTCGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCT  785

seq1  TGGAATGCAGAAATCTGTCTGCC-TCTGCCTACAAAGTAG-----TAGGA  843
      ||||| |||||||| |||||||| |||||| |||||||||     |||||
seq2  TGGAACGCAGAAATTTGTCTGCCTTCTGCCCACAAAGTAGTATGTTAGGA  835

seq1  CTAAAGGCGTGCGGCACCACTG--CCCGACAGTCTATTACTTTTAAATGC  891
      |||||||| ||   ||||||||  || | ||||||  ||||||| |||||
seq2  CTAAAGGCATGTTCCACCACTGGCCCGGGCAGTCTTATACTTTTCAATGC  885

seq1  CAGATGAATCCATTC  906
      | ||||||| |||||
seq2  CGGATGAATTCATTC  900