BAC Information

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BAC

Clone NameB6Ng01-093H08
Chromosome13 (Build37)
Map Location 114,466,984 - 114,678,565
singlet/doubletdoublet
Overlap geneEG632832, LOC622701, LOC100040927, Arl15
Upstream gene9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3
Downstream geneA430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093H08.bB6Ng01-093H08.g
ACCDH904945DH904946
length645796
definitionDH904945|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H08, 5' end.DH904946|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,677,924 - 114,678,565)(114,466,984 - 114,467,772)
sequence
gaattcctcaggcatgagttacaggccaatttacacagcactaagaagag
tatggtgcgactgtagcagggataccaggtacccagccctacagtagcct
ctgagccctggctaccaggcttatcctcaccaagctggtgcttctttgtt
ggagaatctaaccaaagccaagagaaaacaccttaaagatctgatgactg
agaacccttctattagaggcaggcaaggacctccagacgtctgagaaaag
ctattaataaaagcaacaggcaacaaaaacacagaaaaaagtaaaggcgt
gagagctcgccagtaagcagagatacggcatataagcctatagccaggca
gttttaaagtctaaagttaaaagacatgggggtggcagggtaagcatgca
gttgccaggagagtactttcctggtgtgcacaaagccccagcattgaacc
ccagaacccataatccatggcagcactgtctgcagccctagtacctggaa
ggtggagggagggaggaggctcaggagtccaagggccacagcgtttttct
caagaagtacacagagaaacaatccagccgttcagagcactggcagctct
cgcagagggacccatgttcagtcccctggtcccccacacatggct
gaattcactctctggggccagaactcttactcagccactaagggccaggt
atacatagactctcccatgagcaattcttacctcaaggggacttaggtat
tcctggtggccttgatgtccacagactgcaatgctcagtgtttcctttga
gcagagaatggaattaggaggataaacaatggagcaggcctccagcctcc
tgtcattgtcctcagattctgttcaaataggagatgaagccacatgttct
ccacactgacagctaagcatcacagaagtgctggggcctcagcctttctc
cgcagctctaacaggtcatattgatccccgttggatcatcctgaatttca
ttacgcatgtatcatggtctgatgtggtcactctgctaatcccctcatcc
tgtccatttttcttgaggaggcttctcatttgcatcttgctatgaagtta
agtattctctatccaacttagtttcctttcttacttttctctgccacagg
cattacctggcacatctctcatgctcctgactccgtctcaatatctgctt
cacagagagcctggctgagtgagcatctgtagtcatgtgtgagatatgaa
aagaagagtggtacaacctacagagagagaaggaaggaggtgtttgtgtg
tgcatgtgcacatgtgtgtgcagtgtgtgtgtgtgtgtgcactagcacat
gtgcctgtgtgtgtatttaagtgagtgcactcatttcatgcttgtgtgtg
tgtgtgtgtgagagagagagagacgacagacgaccgaccgacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114677924_114678565
seq2: B6Ng01-093H08.b_38_682 (reverse)

seq1  AGCCATGTGTGGGGGACCA-GGGACTGAACATGGGT-CCTCTGCGAGAGC  48
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  AGCCATGTGTGGGGGACCAGGGGACTGAACATGGGTCCCTCTGCGAGAGC  50

seq1  TGCCAGTGCTCTGAACGGCTGGATTGTTTCTCTGTGTACTTCTTGAGAAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGCTCTGAACGGCTGGATTGTTTCTCTGTGTACTTCTTGAGAAA  100

seq1  AACGCTGTGGCCCTTGGACTCCTGAGCCTCCTCCCTCCCTCCACCTTCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGTGGCCCTTGGACTCCTGAGCCTCCTCCCTCCCTCCACCTTCCA  150

seq1  GGTACTAGGGCTGCAGACAGTGCTGCCATGGATTATGGGTTCTGGGGTTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAGGGCTGCAGACAGTGCTGCCATGGATTATGGGTTCTGGGGTTC  200

seq1  AATGCTGGGGCTTTGTGCACACCAGGAAAGTACTCTCCTGGCAACTGCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGGCTTTGTGCACACCAGGAAAGTACTCTCCTGGCAACTGCAT  250

seq1  GCTTACCCTGCCACCCCCATGTCTTTTAACTTTAGACTTTAAAACTGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCCTGCCACCCCCATGTCTTTTAACTTTAGACTTTAAAACTGCCT  300

seq1  GGCTATAGGCTTATATGCCGTATCTCTGCTTACTGGCGAGCTCTCACGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGGCTTATATGCCGTATCTCTGCTTACTGGCGAGCTCTCACGCC  350

seq1  TTTACTTTTTTCTGTGTTTTTGTTGCCTGTTGCTTTTATTAATAGCTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTTCTGTGTTTTTGTTGCCTGTTGCTTTTATTAATAGCTTTT  400

seq1  CTCAGACGTCTGGAGGTCCTTGCCTGCCTCTAATAGAAGGGTTCTCAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACGTCTGGAGGTCCTTGCCTGCCTCTAATAGAAGGGTTCTCAGTC  450

seq1  ATCAGATCTTTAAGGTGTTTTCTCTTGGCTTTGGTTAGATTCTCCAACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCTTTAAGGTGTTTTCTCTTGGCTTTGGTTAGATTCTCCAACAA  500

seq1  AGAAGCACCAGCTTGGTGAGGATAAGCCTGGTAGCCAGGGCTCAGAGGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACCAGCTTGGTGAGGATAAGCCTGGTAGCCAGGGCTCAGAGGCT  550

seq1  ACTGTAGGGCTGGGTACCTGGTATCCCTGCTACAGTCGCACCATACTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGGCTGGGTACCTGGTATCCCTGCTACAGTCGCACCATACTCTT  600

seq1  CTTAGTGCTGTGT-GCTTTGCCTGTAACTCATGCCTGAGGAATTC  642
      |||||||||||||   || ||||||||||||||||||||||||||
seq2  CTTAGTGCTGTGTAAATTGGCCTGTAACTCATGCCTGAGGAATTC  645

seq1: chr13_114466984_114467772
seq2: B6Ng01-093H08.g_71_866

seq1  GAATTCACTCTCTGGGGCCAGAACTCTTACTCAGCCACTAAGGGCCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCTGGGGCCAGAACTCTTACTCAGCCACTAAGGGCCAGGT  50

seq1  ATACATAGACTCTCCCATGAGCAATTCTTACCTCAAGGGGACTTAGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGACTCTCCCATGAGCAATTCTTACCTCAAGGGGACTTAGGTAT  100

seq1  TCCTGGTGGCCTTGATGTCCACAGACTGCAATGCTCAGTGTTTCCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGGCCTTGATGTCCACAGACTGCAATGCTCAGTGTTTCCTTTGA  150

seq1  GCAGAGAATGGAATTAGGAGGATAAACAATGGAGCAGGCCTCCAGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAATGGAATTAGGAGGATAAACAATGGAGCAGGCCTCCAGCCTCC  200

seq1  TGTCATTGTCCTCAGATTCTGTTCAAATAGGAGATGAAGCCACATGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTCCTCAGATTCTGTTCAAATAGGAGATGAAGCCACATGTTCT  250

seq1  CCACACTGACAGCTAAGCATCACAGAAGTGCTGGGGCCTCAGCCTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGACAGCTAAGCATCACAGAAGTGCTGGGGCCTCAGCCTTTCTC  300

seq1  CGCAGCTCTAACAGGTCATATTGATCCCCGTTGGATCATCCTGAATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCTAACAGGTCATATTGATCCCCGTTGGATCATCCTGAATTTCA  350

seq1  TTACGCATGTATCATGGTCTGATGTGGTCACTCTGCTAATCCCCTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCATGTATCATGGTCTGATGTGGTCACTCTGCTAATCCCCTCATCC  400

seq1  TGTCCATTTTTCTTGAGGAGGCTTCTCATTTGCATCTTGCTATGAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTTTCTTGAGGAGGCTTCTCATTTGCATCTTGCTATGAAGTTA  450

seq1  AGTATTCTCTATCCAACTTAGTTTCCTTTCTTACTTTTCTCTGCCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTCTATCCAACTTAGTTTCCTTTCTTACTTTTCTCTGCCACAGG  500

seq1  CATTACCTGGCACATCTCTCATGCTCCTGACTCCGTCTCAATATCTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTGGCACATCTCTCATGCTCCTGACTCCGTCTCAATATCTGCTT  550

seq1  CACAGAGAGCCTGGCTGAGTGAGCATCTGTAGTCATGTGTGAGATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGCCTGGCTGAGTGAGCATCTGTAGTCATGTGTGAGATATGAA  600

seq1  AAGAAGAGTGGTACAACCTACAGAGAGAGAAGGAAGGAGGTGTTTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGTGGTACAACCTACAGAGAGAGAAGGAAGGAGGTGTTTGTGTG  650

seq1  TGCATGTGCACATGTGTGTGCAGTGTGTGTGTGTGTGTGCACTAGCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGCACATGTGTGTGCAGTGTGTGTGTGTGTGTGCACTAGCACAT  700

seq1  GTGCCTGTGTGTGTATTTAAGTGAGTGCACTCA-TTCATGCTTGTGTGTG  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGCCTGTGTGTGTATTTAAGTGAGTGCACTCATTTCATGCTTGTGTGTG  750

seq1  TGTGTGTGTGAGAGAGAGAGAGAC------AGACAGACAGACAGAC  789
      ||||||||||||||||||||||||       ||| ||| |||||||
seq2  TGTGTGTGTGAGAGAGAGAGAGACGACAGACGACCGACCGACAGAC  796