BAC Information

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BAC

Clone NameB6Ng01-094L03
Chromosome13 (Build37)
Map Location 66,409,443 - 66,671,487
singlet/doubletdoublet
Overlap geneLOC100041915, 2410141K09Rik, C330014B19Rik
Upstream geneLOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094L03.bB6Ng01-094L03.g
ACCDH905848DH905849
length1,121859
definitionDH905848|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L03, 5' end.DH905849|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,409,443 - 66,410,572)(66,670,951 - 66,671,487)
sequence
gaattccactttagtaaaatacatgccacatgttttccagtagaaattac
ccatccccccacccccaccctttcctcactataaatttctagatattttc
ttagaactaattttcaggtaaaaatcttttctcatgaggtttctctcctg
tatgaattctctaatgaatcataagatcatatttgtgagtgaagcatttg
tcacatttactacatttgtaaggcttctttcttgtatgaattatctgatg
actactaggactgtgtttgttgttacagcatttgtcacactcactacatt
tataaggtttctctccagtatgaattctctgatgaatattaagactgtat
ttgtgaaaaaagcatttgtcacattcactacatctgtaaggtttctctcc
tgtatggattctctgatgttgtctaagcttgcatttcttggtgaaacatc
tggcacgttcactacatctgtaaggtttctttccactattggtttgtttc
agcctgagtatttgtgtagagttaaaaaccttatcaagcactataccatt
gtgttctttctttcctttgtggattccttgatgtagaccagtgatataac
acaaattgaaacagtttatacagtttttatgtttgcaaggtcctctggtg
tttccattttgatgactgtttatgtttgatgactcaacacgtgtattctt
gaagttagcttggtaaagtacactttgggtgtattcaggaataatttttg
ccatgctttgacctttgtaagacttctcctgtatattcacacactgggat
gtgttggaccttttaatcattatgcatttatttgtttttaatgaggcttt
actggataaaaatatcttttaaatcatcttcatgttcatgtccatatgaa
aattcaaatatgtatttatcatatttaaaagaatagtatgttattcttat
ataagtgaggacaatgtccactatgaataacatctcctggtctagttgtg
gtaactctttaaagtaattcaggccggtgtggtggccacctctttaatcc
cagcacttggaggcagaatgcagcagatttctgagttcacgccagcaggg
ctaccagagaaaccttgtctc
gaattctgcagcttgagggggatgggtatggaagggtggggaatctttag
gttgtgccagagaccaggaatgagaggtcaccaaggataatatgggggtg
atcttagttgagatgcatggcagagagttatggaagctcaagaggccata
tcttgctaccaggaaggacctcttgtggagaattaagcacagtaaatgaa
ccaaatacatttgctcccaaaactggtcctgtctacaagaaatgcaggca
caaagatggagcagagactgagggaatgaacaaatgatacactgaccaac
ttgagacccatccctagggcaagcaccaatcctgacattagtgaagatcc
tttgttatacttgcagacagtagcttagcataactgtcctctgagagtct
ccatccagcaactgactgaaagatgcagagacccacagcctatcatcgaa
cagggctcagggtgtcttttggaagagttgggggaaaggattgagggcct
gtgaaggaacaggaagtctattagaagatccagcgagtcaactaacctgt
acactaggagattctcagagagtgactcaccagccaaagagcaaacacag
ggtgggccaaggccccaccatatatgtagtaaatgtactttagtcttcac
atgggtcctggaacaaatagagtgggtggatgtcccttaaggtgttgtct
gtctgtccaacctgttccttaactgggctgcctgttctgacctcagtagc
agagacctgacttgtcatgtgtgggggatactcatgtggtccccactctc
catgggtagatgaaaaggagttaaaggatgagggactgtataatgtgaaa
ggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66409443_66410572
seq2: B6Ng01-094L03.b_44_1164

seq1  GAATTCCACTTTAGTAAAATACATGCCACATGTTTTCCAGTAGAAATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTAGTAAAATACATGCCACATGTTTTCCAGTAGAAATTAC  50

seq1  CCATCCCCCCACCCCCACCCTTTCCTCACTATAAATTTCTAGATATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCCACCCCCACCCTTTCCTCACTATAAATTTCTAGATATTTTC  100

seq1  TTAGAACTAATTTTCAGGTAAAAATCTTTTCTCATGAGGTTTCTCTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTAATTTTCAGGTAAAAATCTTTTCTCATGAGGTTTCTCTCCTG  150

seq1  TATGAATTCTCTAATGAATCATAAGATCATATTTGTGAGTGAAGCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTCTCTAATGAATCATAAGATCATATTTGTGAGTGAAGCATTTG  200

seq1  TCACATTTACTACATTTGTAAGGCTTCTTTCTTGTATGAATTATCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTACTACATTTGTAAGGCTTCTTTCTTGTATGAATTATCTGATG  250

seq1  ACTACTAGGACTGTGTTTGTTGTTACAGCATTTGTCACACTCACTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAGGACTGTGTTTGTTGTTACAGCATTTGTCACACTCACTACATT  300

seq1  TATAAGGTTTCTCTCCAGTATGAATTCTCTGATGAATATTAAGACTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTTTCTCTCCAGTATGAATTCTCTGATGAATATTAAGACTGTAT  350

seq1  TTGTGAAAAAAGCATTTGTCACATTCACTACATCTGTAAGGTTTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAAAAGCATTTGTCACATTCACTACATCTGTAAGGTTTCTCTCC  400

seq1  TGTATGGATTCTCTGATGTTGTCTAAGCTTGCATTTCTTGGTGAAACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATTCTCTGATGTTGTCTAAGCTTGCATTTCTTGGTGAAACATC  450

seq1  TGGCACGTTCACTACATTTGTAAGGTTTCTTTCCACTATTGGTTTGTTTC  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGCACGTTCACTACATCTGTAAGGTTTCTTTCCACTATTGGTTTGTTTC  500

seq1  AGCCTGAGTATTTGTGTAGAGTTAAAAACTTTATCAAGCACTATACCATT  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCTGAGTATTTGTGTAGAGTTAAAAACCTTATCAAGCACTATACCATT  550

seq1  GTGCTCTTTCTTTCCTATGTGGATTCCTTGATGTAGACCAGTGATAGAAC  600
      ||| |||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GTGTTCTTTCTTTCCTTTGTGGATTCCTTGATGTAGACCAGTGATATAAC  600

seq1  ACAAATTTAAACAGTTTATACAGTTTTTATGTTTGCAAGGTCCTCTGGTG  650
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGAAACAGTTTATACAGTTTTTATGTTTGCAAGGTCCTCTGGTG  650

seq1  TTTCCATTTTGATGACTGTTTATGTTTGATGACTCAACACGTGTATTCCT  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCCATTTTGATGACTGTTTATGTTTGATGACTCAACACGTGTATTCTT  700

seq1  GAAGTTAGCTTGGTAAAGTACACTTTGGGTGTATTCAGGAATAATTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGCTTGGTAAAGTACACTTTGGGTGTATTCAGGAATAATTTTTG  750

seq1  CCATGCTTTGACCTTTGTAAGACTTCTCCTGTATATTCACACACTGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTTGACCTTTGTAAGACTTCTCCTGTATATTCACACACTGGGAT  800

seq1  GTGTTGGACCTTTTAATCATTATGCATTTATTTGTTTTTAATGAGGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGACCTTTTAATCATTATGCATTTATTTGTTTTTAATGAGGCTTT  850

seq1  ACTGGATAAAAATATCTTTTAAATCATCTTCATGTTCATGTCCATATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAAAAATATCTTTTAAATCATCTTCATGTTCATGTCCATATGAA  900

seq1  AATTCAAATATGTATTTATCATATTTAAAAGAATAGATATGTTATTCTTA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATTCAAATATGTATTTATCATATTTAAAAGAATAG-TATGTTATTCTTA  949

seq1  TATAAGTGAGGACAATGTCCACTATGAATAACATCTCCTGGTCTAGTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGAGGACAATGTCCACTATGAATAACATCTCCTGGTCTAGTTGT  999

seq1  GGTAAACTCTTTAAAAGTAATTCAGGCCGGTGGTGGTGGCACACTCCTTT  1050
      ||| |||||||| |||||||||||||||||| |||||||| |||  ||||
seq2  GGT-AACTCTTT-AAAGTAATTCAGGCCGGT-GTGGTGGC-CACCTCTTT  1045

seq1  AATCCCAGCACTTGGGAGGCAG-ATGCAGGCAGATTTCCGAGTTCACGGC  1099
      ||||||||||||| |||||||| ||||| ||||||||| |||||||| ||
seq2  AATCCCAGCACTT-GGAGGCAGAATGCA-GCAGATTTCTGAGTTCAC-GC  1092

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTC  1130
      ||| ||||||||| |||||||||| ||||||
seq2  CAG-CAGGGCTAC-CAGAGAAACCTTGTCTC  1121

seq1: chr13_66670951_66671487
seq2: B6Ng01-094L03.g_370_925 (reverse)

seq1  CCCCTCCCCTTTCTACATTACACAGTCCCTCATCC-TTAACTCCTTTTCA  49
      ||||||||||||| |||||| |||||||||||||| ||||||||||||||
seq2  CCCCTCCCCTTTC-ACATTATACAGTCCCTCATCCTTTAACTCCTTTTCA  49

seq1  TCTACCCA--GGGAGTGGGGACCACTTGAGTATCCCCCAAACAAGACAAG  97
      ||||||||  | ||||||||||||| ||||||||||||| ||| ||||||
seq2  TCTACCCATGGAGAGTGGGGACCACATGAGTATCCCCCACACATGACAAG  99

seq1  TCA-------------AAGGTCAGACAAGGCAACCAAGTTAGGGGAACAG  134
      |||              ||||||||  ||||| || |||||  |||||||
seq2  TCAGGTCTCTGCTACTGAGGTCAGAACAGGCAGCCCAGTTA-AGGAACAG  148

seq1  GTTGGACAGACAGACAACACCTTAAGGGACATCCCCCCACTCTATTTGTT  184
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTGGACAGACAGACAACACCTTAAGGGACATCCACCCACTCTATTTGTT  198

seq1  TCAGCAACCATGTGAAGACTGAAGCACATTTACTACATATGTGGTGGGGC  234
       ||| | ||||||||||||| ||| ||||||||||||||| |||||||||
seq2  CCAGGACCCATGTGAAGACTAAAGTACATTTACTACATATATGGTGGGGC  248

seq1  CTTGGCCCACCCTGTGTTTGCTCTTTGGCTGGTGGGTCACTCTCTGAGAA  284
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGGCCCACCCTGTGTTTGCTCTTTGGCTGGTGAGTCACTCTCTGAGAA  298

seq1  TCTCCTAGTGTACCTGATAGTTGACTCGCTGGATCTTCTAATAGACTTCC  334
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  TCTCCTAGTGTACAGGTTAGTTGACTCGCTGGATCTTCTAATAGACTTCC  348

seq1  TGTTCCTTTGCAGGCCCTCAATCCTTTCCCCCAACACTTCCAAAAGACTC  384
      ||||||||  ||||||||||||||||||||||||| |||||||||||| |
seq2  TGTTCCTTCACAGGCCCTCAATCCTTTCCCCCAACTCTTCCAAAAGACAC  398

seq1  CATGAGCCCTGTCCAATGATAGGCTGTGAGTCTCTGCATCTTTCAGTCAG  434
      | |||||||||| | ||||||||||||| |||||||||||||||||||||
seq2  CCTGAGCCCTGTTCGATGATAGGCTGTGGGTCTCTGCATCTTTCAGTCAG  448

seq1  GTGCTGGATGGAGATTCTCAG-----AGTTATGCTAAGCTACTGTCTGCA  479
       ||||||||||||| ||||||     ||||||||||||||||||||||||
seq2  TTGCTGGATGGAGACTCTCAGAGGACAGTTATGCTAAGCTACTGTCTGCA  498

seq1  AGTATAACAAAGGACCATCACTAATGTCAGGATACGTGCTTGCCCATGGG  529
      |||||||||||||| | ||||||||||||||||  ||||||||||  |||
seq2  AGTATAACAAAGGATCTTCACTAATGTCAGGATTGGTGCTTGCCCTAGGG  548

seq1  ATGGGTCT  537
      ||||||||
seq2  ATGGGTCT  556