BAC Information

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BAC

Clone NameB6Ng01-095C08
Chromosome13 (Build37)
Map Location 76,010,930 - 76,189,901
singlet/doubletdoublet
Overlap geneRhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx
Downstream geneGpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603, EG666607, Ankrd32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095C08.bB6Ng01-095C08.g
ACCDH906165DH906166
length1,185812
definitionDH906165|Mus musculus domesticus DNA, BAC clone: B6Ng01-095C08, 5' end.DH906166|Mus musculus domesticus DNA, BAC clone: B6Ng01-095C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,010,930 - 76,012,132)(76,189,090 - 76,189,901)
sequence
gaattccaaaacagccaggactacagaataagaccctgcctcaaaccaac
aaacaaaaaacaacaaaggaaggaaggaaggaaagaaagaaggacggaag
ggagggagggagtctgaactccagaaaaagtgatagcagaaaaaaagtta
cttctggtggcagtaaaaacaggcactaaacagtcactctgtacaacata
accaaacacttagctaaattaaaccaactgtgagcaaaagaaatccacca
acagcaagaatcagcttttcctgtgtgttgctgtatgtcttcttaaaact
ctagtgtatgcaaatcaaagtgggggatgagctacttagccgggttggaa
ggcttgccatggcaggagatccttttccatcctagcttcctgatttctta
acaactttacacacaaaaaattctcaccagaaatttgggagacagaggca
ggaaggtaaggaattcaaaaccagccctggctatacagacaagtgtgagg
cagcccaagaaacacacaccctgttcctaagaagagaaaactagaaatga
aaacgagtgctgtgaagagaagcaattagtaggtttccagtaataactgg
ggtgcttctaaagctgaaaacgaacagtcccacccatgagggcacggcag
gaacttccaaatcccaagcagatggccagtgcaccaggtggaaggccgcc
gagaggaggatgccctttgtgggcagccactgcctggcaaccaggaaggt
agacccagactttcctctggagattttaaatggtagtgctacataaaaaa
gttgtctaaatggtgacttctctgatgccatagttcataattacagaatt
agcatatttcataattctgttatccagaggaccatttcctctgctaagaa
gaatcataccatagtactaaagatgtgacctttcagatttctttcagttc
ccacccaagtaagtactgaccctgcacagcatccaggtcttccacagctc
ctgaagaggatgtcctgcactctgatttgcacattttataggcaattcca
taagcaatagctattgacacaaataaagaatgatgtttactgcgtctccg
gaggctgtaataaccctcatggagattaagagtgttagaaaaataattca
attctttacatggaagtgactattgtccagttgta
gaattcaagattcttaacaaatcctagcctgatttacagctgttagagtc
caagaatcactgaaggaagacctcagattcaaatagtatgcgaaaggcaa
agagcagaaattactaccattcaggggtcaaccatccatcaaaatgatta
tgaccagtggagcttttaggcccccttttatataggaataggggaatttt
ctagaagagcaaggtaacttctaacatgattgatagggggtaaaacagtg
acattagtacaagtttgattggttgctgtgttaattctattataactgat
ggtaccttgaagaattttgaaagccagctcagttctggcctttttagtac
ttccagctaggtttcccgggagctgactcagctccaaaacttatcctccc
taagtcagggccatcattaactaaaatgcccattgttaatggctccttct
gaggaaccaagtatgtgtactggggaattgaaaatttttattcccaaggt
ttttagacctcacaagagttacttttacattcattaattaacatttatta
actgttttatgccaggagatatgctaagcattggaaaaactaaaattaac
aatatacttttgcctcaaagaaacaaaatgggcagatgtaggagacaatc
tgacaattataactcaatgccatggttttgataagttattctcagtcagt
attcatatactctgatctcaaggcagagggaagggagaaaagagagtgtg
cattcagagagagagaaaattcagagagagggagaggagaggagaggaga
ggagaggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76010930_76012132
seq2: B6Ng01-095C08.b_49_1233

seq1  GAATTCCAAAACAGCCAGGACTACAGAATAAGACCCTGCCTCAAACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACAGCCAGGACTACAGAATAAGACCCTGCCTCAAACCAAC  50

seq1  AAACAAAAAACAACAAAGGAAGGAAGGAAGGAAAGAAAGAAGGACGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAACAAAGGAAGGAAGGAAGGAAAGAAAGAAGGACGGAAG  100

seq1  GGAGGGAGGGAGTCTGAACTCCAGAAAAAGTGATAGCAGAAAAAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGTCTGAACTCCAGAAAAAGTGATAGCAGAAAAAAAGTTA  150

seq1  CTTCTGGTGGCAGTAAAAACAGGCACTAAACAGTCACTCTGTACAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGGCAGTAAAAACAGGCACTAAACAGTCACTCTGTACAACATA  200

seq1  ACCAAACACTTAGCTAAATTAAACCAACTGTGAGCAAAAGAAATCCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACACTTAGCTAAATTAAACCAACTGTGAGCAAAAGAAATCCACCA  250

seq1  ACAGCAAGAATCAGCTTTTCCTGTGTGTTGCTGTATGTCTTCTTAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGAATCAGCTTTTCCTGTGTGTTGCTGTATGTCTTCTTAAAACT  300

seq1  CTAGTGTATGCAAATCAAAGTGGGGGATGAGCTACTTAGCCGGGTTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTATGCAAATCAAAGTGGGGGATGAGCTACTTAGCCGGGTTGGAA  350

seq1  GGCTTGCCATGGCAGGAGATCCTTTTCCATCCTAGCTTCCTGATTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCATGGCAGGAGATCCTTTTCCATCCTAGCTTCCTGATTTCTTA  400

seq1  ACAACTTTACACACAAAAAATTCTCACCAGAAATTTGGGAGACAGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTACACACAAAAAATTCTCACCAGAAATTTGGGAGACAGAGGCA  450

seq1  GGAAGGTAAGGAATTCAAAACCAGCCCTGGCTATACAGACAAGTGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAAGGAATTCAAAACCAGCCCTGGCTATACAGACAAGTGTGAGG  500

seq1  CAGCCCAAGAAACACACACCCTGTTCCTAAGAAGAGAAAACTAGAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGAAACACACACCCTGTTCCTAAGAAGAGAAAACTAGAAATGA  550

seq1  AAACGAGTGCTGTGAAGAGAAGCAATTAGTAGGTTTCCAGTAATAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGTGCTGTGAAGAGAAGCAATTAGTAGGTTTCCAGTAATAACTGG  600

seq1  GGTGCTTCTAAAGCTGAAAACGAACAGTCCCACCCATGAGGGCACGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTAAAGCTGAAAACGAACAGTCCCACCCATGAGGGCACGGCAG  650

seq1  GAACTTCCAAATCCCAAGCAGATGGCCAGTGCACCAGGTGGAAGGCCGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCAAATCCCAAGCAGATGGCCAGTGCACCAGGTGGAAGGCCGCC  700

seq1  GAGAGGAGGATGCCCTTTGTGGGCAGCCACTGCCTGGCAACCAGGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGATGCCCTTTGTGGGCAGCCACTGCCTGGCAACCAGGAAGGT  750

seq1  AGACCCAGACTTTCCTCTGGAGATTTTAAATGGTAGTGCTACATAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGACTTTCCTCTGGAGATTTTAAATGGTAGTGCTACATAAAAAA  800

seq1  GTTGTCTAAATGGTGACTTCTCTGATGCCATAGTTCATAATTACAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAAATGGTGACTTCTCTGATGCCATAGTTCATAATTACAGAATT  850

seq1  AGCATATTTCATAATTCTGTTATCCAGAGGACCATTTCCTCTGCTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTTCATAATTCTGTTATCCAGAGGACCATTTCCTCTGCTAAGAA  900

seq1  GAATCATACCATAGGTACTAAAGATGTGACCTTTCAGATTTCTTTCAGTT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATCATACCATA-GTACTAAAGATGTGACCTTTCAGATTTCTTTCAGTT  949

seq1  CCCACCCAAGTAAGGTACTGACCCCTGCCACAGCATCCAGGTCTTCCACA  1000
      ||||||||||||| ||||||| ||||| ||||||||||||||||||||||
seq2  CCCACCCAAGTAA-GTACTGA-CCCTG-CACAGCATCCAGGTCTTCCACA  996

seq1  GCTCCTG-AGAGGATGTCCTGCACCTCTGATTTGCACATTTTATAGGCAA  1049
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTCCTGAAGAGGATGTCCTGCA-CTCTGATTTGCACATTTTATAGGCAA  1045

seq1  TTCCATAAGCAATAGCTATTGACACAAATAACAGAAATGATGTATGTACT  1099
      ||||||||||||||||||||||||||||||| || |||||||  | ||||
seq2  TTCCATAAGCAATAGCTATTGACACAAATAA-AG-AATGATG--TTTACT  1091

seq1  GTCTTTCTCCGGAGGCTGTAATTACACCTCATGGAGATCTAAGAGTGGTT  1149
      |    ||||||||||||||||| || |||||||||||| ||||||| |||
seq2  G--CGTCTCCGGAGGCTGTAATAAC-CCTCATGGAGAT-TAAGAGT-GTT  1136

seq1  AG-AAAATAATTTCATTCTTTTACAATGGAAGTGGCCTAATGTGTCACAG  1198
      || |||||||||  |||| ||||| |||||||| | ||| |||    |||
seq2  AGAAAAATAATTCAATTC-TTTAC-ATGGAAGT-GACTATTGT---CCAG  1180

seq1  TTGTA  1203
      |||||
seq2  TTGTA  1185

seq1: chr13_76189090_76189901
seq2: B6Ng01-095C08.g_66_877 (reverse)

seq1  CCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCCTCTCTCTGAATTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCCTCTCTCTGAATTTTCTC  50

seq1  TCTCTCTGAATGCACACTCTCTTTTCTCCCTTCCCTCTGCCTTGAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGAATGCACACTCTCTTTTCTCCCTTCCCTCTGCCTTGAGATCA  100

seq1  GAGTATATGAATACTGACTGAGAATAACTTATCAAAACCATGGCATTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATGAATACTGACTGAGAATAACTTATCAAAACCATGGCATTGAG  150

seq1  TTATAATTGTCAGATTGTCTCCTACATCTGCCCATTTTGTTTCTTTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGTCAGATTGTCTCCTACATCTGCCCATTTTGTTTCTTTGAGG  200

seq1  CAAAAGTATATTGTTAATTTTAGTTTTTCCAATGCTTAGCATATCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATATTGTTAATTTTAGTTTTTCCAATGCTTAGCATATCTCCTG  250

seq1  GCATAAAACAGTTAATAAATGTTAATTAATGAATGTAAAAGTAACTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACAGTTAATAAATGTTAATTAATGAATGTAAAAGTAACTCTTG  300

seq1  TGAGGTCTAAAAACCTTGGGAATAAAAATTTTCAATTCCCCAGTACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTAAAAACCTTGGGAATAAAAATTTTCAATTCCCCAGTACACAT  350

seq1  ACTTGGTTCCTCAGAAGGAGCCATTAACAATGGGCATTTTAGTTAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTCCTCAGAAGGAGCCATTAACAATGGGCATTTTAGTTAATGAT  400

seq1  GGCCCTGACTTAGGGAGGATAAGTTTTGGAGCTGAGTCAGCTCCCGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGACTTAGGGAGGATAAGTTTTGGAGCTGAGTCAGCTCCCGGGAA  450

seq1  ACCTAGCTGGAAGTACTAAAAAGGCCAGAACTGAGCTGGCTTTCAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCTGGAAGTACTAAAAAGGCCAGAACTGAGCTGGCTTTCAAAATT  500

seq1  CTTCAAGGTACCATCAGTTATAATAGAATTAACACAGCAACCAATCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGTACCATCAGTTATAATAGAATTAACACAGCAACCAATCAAAC  550

seq1  TTGTACTAATGTCACTGTTTTACCCCCTATCAATCATGTTAGAAGTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTAATGTCACTGTTTTACCCCCTATCAATCATGTTAGAAGTTACC  600

seq1  TTGCTCTTCTAGAAAATTCCCCTATTCCTATATAAAAGGGGGCCTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCTAGAAAATTCCCCTATTCCTATATAAAAGGGGGCCTAAAAG  650

seq1  CTCCACTGGTCATAATCATTTTGATGGATGGTTGACCCCTGAATGGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGGTCATAATCATTTTGATGGATGGTTGACCCCTGAATGGTAGT  700

seq1  AATTTCTGCTCTTTGCCTTTCGCATACTATTTGAATCTGAGGTCTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGCTCTTTGCCTTTCGCATACTATTTGAATCTGAGGTCTTCCTT  750

seq1  CAGTGATTCTTGGACTCTAACAGCTGTAAATCAGGCTAGGATTTGTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTCTTGGACTCTAACAGCTGTAAATCAGGCTAGGATTTGTTAAG  800

seq1  AATCTTGAATTC  812
      ||||||||||||
seq2  AATCTTGAATTC  812