BAC Information

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BAC

Clone NameB6Ng01-096H15
Chromosome13 (Build37)
Map Location 4,608,599 - 4,731,213
singlet/doubletdoublet
Overlap geneEG432721
Upstream geneAsb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1
Downstream geneEG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096H15.bB6Ng01-096H15.g
ACCDH907115DH907116
length1,1561,167
definitionDH907115|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H15, 5' end.DH907116|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,730,057 - 4,731,213)(4,608,599 - 4,609,772)
sequence
gaattcttttcagtaaatttccataataaattaaacaccacttggagaaa
aatgtagtgcttgggggatacgtcttgtatacttaaaacacatgaaaatt
gacaaaactgccccatgatatccagaaactccatcaaacattatgaggtt
tgttgtttgtttggcatgtctgagaacaatgagtatatttatttaaaatt
tgtattttttaaaaattattgaaaataattttcctctttgcatgttccta
cttgctgctggcccattgttttctctctctctctctctctctctctcttt
ccttctattctgaaattatatttagaatattcataatttttaattctttt
ctttgctaaggtcatcccaggggcttattttatcatacaactagaaaaaa
gaattcatcatcgatcacactttaaaattcacttatgtgataatactact
agtgtagaaaaatgtacaattgacatattgaagggacacaagattcaaat
ctactgttttacagaaaactaaaatttccaataggaaaacagacaaagtg
ggcacttgtgtagtatcattgcaacaaatatgaaatcaagtgaattcaac
ttgagtcaaaccctatgcttgtcatttctggatgtatgaacttgactatg
taattcaaaatttctgaatactctttccttcaaaggaaattagaaagcat
atttctcatttgtaaattgtcttaaggattaaattgaatgtggaaatgta
agtaacagatatagcattgtgcctgactgttaaatattaatttacaatta
aatagtaatttatttccagctttaaaccattcctaattatatccaatata
gaacaagatagttcttaaaatattaattgtattaaatgctgaatttcctg
gattctggaagacaagctgaatgtctcccaccttcccttttcttcttccc
tggagaacatctagaggatgcaactcttcttctaggaaacataacatgga
gggccaaaacccggaagttacagtttcctcaagcttgtcaaactggtgaa
agttgtataactgatggtgtggccattatgattaaggggaagtgtttatt
ggagacctgaaaacggaacagctagagccttctggaacgttgggaggaga
gagaaa
gaattccgtctccgagcaacctgcctaaagcccagatccagtgctctgtc
cttcttgcaaacaggctgtggttcaggatatttcctggacatcagatgtt
ttagattgatgatcgtttctagtatcctggaaaaaacaggtttgactata
tcagctgtcttgaaccttgcaatgatgatgagtgctactttgaggtgatt
gccattttagtaatagaggaaatataatctgaatatcatttttaaggtgt
gtcttatggaattaaaaaaatcaagattaaaaattaaacatctctggaag
attattcactgtaataagaactaataataagggaggtcatttaaagagag
caaatagtatataggcagattttgagggaggaaaaggaagagagaaatgt
aattataattgcaaacaaaacaaaacaaaacaaaaacaaaaacccaaggg
tcttcccacaagataatccctcaaaggaatgcctacaagactgtctccca
ggtgatttttaggtcttattcagttggcaataatcctaaaatcacaagct
gaaacatctagaaggaaccagaaaaccagcccataaacgcaaaggtaaat
agctatttcgaaaatattagcattactaagatgattagaaaaattgaaga
tttgcgtgttacagtgcttagaattttgtatccttcactatgtttgttaa
taacttattaaaaacttagcagaattcaacaattttacaatttcaaccca
aagttttgttttgttattttaatttctctgttgccatattacacatctgt
tcatttgtttgagtttttcaagtgctcatggcagatgcactgtggatgtg
gaaaactctacatcttctccagttctctttttttatttatattttgtaaa
aatggcaaagttaagccattaacggtcagacaactatttgtagctttcga
tctttatgcagattaacatggaagtatccatttgcagaggatgtgttttc
agatgttcatatattagtactcttctctcctctgaataagcttttattac
tcatagcgacacttacacttcagttccatatctatagaaaatattgtcct
atctttaatgatttctatcattcataaacggtagttggatctaggggagt
gctcttttaatgtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4730057_4731213
seq2: B6Ng01-096H15.b_45_1200 (reverse)

seq1  TTTCTCTCTCCTCTCAACTGTTCCAGAAGCCTCTAGCTGTTCCGTTTTTC  50
      ||||||||||||| |||| |||||||||| |||||||||||||| |||||
seq2  TTTCTCTCTCCTCCCAAC-GTTCCAGAAGGCTCTAGCTGTTCCG-TTTTC  48

seq1  AGGTCTCCAATAAACACTTCTCCTTAATCAT-ATGGCCACACCATCAGTT  99
      |||||||||||||||||||| |||||||||| |||||||||||||||| |
seq2  AGGTCTCCAATAAACACTTCCCCTTAATCATAATGGCCACACCATCAG-T  97

seq1  TATACAACTTTCACCAGTTTGAC-AGCTTGAGGAAACTGTAACTTCCGGG  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATACAACTTTCACCAGTTTGACAAGCTTGAGGAAACTGTAACTTCCGGG  147

seq1  TTTTGGCCCTCCATGTTATGTTTCCTAGAAGAAGAGTTGCATCCTCTAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCCTCCATGTTATGTTTCCTAGAAGAAGAGTTGCATCCTCTAGA  197

seq1  TGTTCTCCAGGGAAGAAGAAAAGGGAAGGTGGGAGACATTCAGCTTGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCAGGGAAGAAGAAAAGGGAAGGTGGGAGACATTCAGCTTGTCT  247

seq1  TCCAGAATCCAGGAAATTCAGCATTTAATACAATTAATATTTTAAGAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATCCAGGAAATTCAGCATTTAATACAATTAATATTTTAAGAACT  297

seq1  ATCTTGTTCTATATTGGATATAATTAGGAATGGTTTAAAGCTGGAAATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTCTATATTGGATATAATTAGGAATGGTTTAAAGCTGGAAATAA  347

seq1  ATTACTATTTAATTGTAAATTAATATTTAACAGTCAGGCACAATGCTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATTTAATTGTAAATTAATATTTAACAGTCAGGCACAATGCTATA  397

seq1  TCTGTTACTTACATTTCCACATTCAATTTAATCCTTAAGACAATTTACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTTACATTTCCACATTCAATTTAATCCTTAAGACAATTTACAA  447

seq1  ATGAGAAATATGCTTTCTAATTTCCTTTGAAGGAAAGAGTATTCAGAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATATGCTTTCTAATTTCCTTTGAAGGAAAGAGTATTCAGAAAT  497

seq1  TTTGAATTACATAGTCAAGTTCATACATCCAGAAATGACAAGCATAGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTACATAGTCAAGTTCATACATCCAGAAATGACAAGCATAGGGT  547

seq1  TTGACTCAAGTTGAATTCACTTGATTTCATATTTGTTGCAATGATACTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAAGTTGAATTCACTTGATTTCATATTTGTTGCAATGATACTAC  597

seq1  ACAAGTGCCCACTTTGTCTGTTTTCCTATTGGAAATTTTAGTTTTCTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCCCACTTTGTCTGTTTTCCTATTGGAAATTTTAGTTTTCTGTA  647

seq1  AAACAGTAGATTTGAATCTTGTGTCCCTTCAATATGTCAATTGTACATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGATTTGAATCTTGTGTCCCTTCAATATGTCAATTGTACATTT  697

seq1  TTCTACACTAGTAGTATTATCACATAAGTGAATTTTAAAGTGTGATCGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACTAGTAGTATTATCACATAAGTGAATTTTAAAGTGTGATCGAT  747

seq1  GATGAATTCTTTTTTCTAGTTGTATGATAAAATAAGCCCCTGGGATGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTCTTTTTTCTAGTTGTATGATAAAATAAGCCCCTGGGATGACC  797

seq1  TTAGCAAAGAAAAGAATTAAAAATTATGAATATTCTAAATATAATTTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAGAAAAGAATTAAAAATTATGAATATTCTAAATATAATTTCAG  847

seq1  AATAGAAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATGGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATGGGCC  897

seq1  AGCAGCAAGTAGGAACATGCAAAGAGGAAAATTATTTTCAATAATTTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGTAGGAACATGCAAAGAGGAAAATTATTTTCAATAATTTTTA  947

seq1  AAAAATACAAATTTTAAATAAATATACTCATTGTTCTCAGACATGCCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAAATTTTAAATAAATATACTCATTGTTCTCAGACATGCCAAA  997

seq1  CAAACAACAAACCTCATAATGTTTGATGGAGTTTCTGGATATCATGGGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAAACCTCATAATGTTTGATGGAGTTTCTGGATATCATGGGGC  1047

seq1  AGTTTTGTCAATTTTCATGTGTTTTAAGTATACAAGACGTATCCCCCAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTCAATTTTCATGTGTTTTAAGTATACAAGACGTATCCCCCAAG  1097

seq1  CACTACATTTTTCTCCAAGTGGTGTTTAATTTATTATGGAAATTTACTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATTTTTCTCCAAGTGGTGTTTAATTTATTATGGAAATTTACTGA  1147

seq1  AAAGAATTC  1157
      |||||||||
seq2  AAAGAATTC  1156

seq1: chr13_4608599_4609772
seq2: B6Ng01-096H15.g_68_1234

seq1  GAATTCCGTCTCCGAGCAACCTGCCTAAAGCCCAGATCCAGTGCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTCTCCGAGCAACCTGCCTAAAGCCCAGATCCAGTGCTCTGTC  50

seq1  CTTCTTGCAAACAGGCTGTGGTTCAGGATATTTCCTGGACATCAGATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCAAACAGGCTGTGGTTCAGGATATTTCCTGGACATCAGATGTT  100

seq1  TTAGATTGATGATCGTTTCTAGTATCCTGGAAAAAACAGGTTTGACTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGATGATCGTTTCTAGTATCCTGGAAAAAACAGGTTTGACTATA  150

seq1  TCAGCTGTCTTGAACCTTGCAATGATGATGAGTGCTACTTTGAGGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTCTTGAACCTTGCAATGATGATGAGTGCTACTTTGAGGTGATT  200

seq1  GCCATTTTAGTAATAGAGGAAATATAATCTGAATATCATTTTTAAGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTAGTAATAGAGGAAATATAATCTGAATATCATTTTTAAGGTGT  250

seq1  GTCTTATGGAATTAAAAAAATCAAGATTAAAAATTAAACATCTCTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGGAATTAAAAAAATCAAGATTAAAAATTAAACATCTCTGGAAG  300

seq1  ATTATTCACTGTAATAAGAACTAATAATAAGGGAGGTCATTTAAAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACTGTAATAAGAACTAATAATAAGGGAGGTCATTTAAAGAGAG  350

seq1  CAAATAGTATATAGGCAGATTTTGAGGGAGGAAAAGGAAGAGAGAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTATATAGGCAGATTTTGAGGGAGGAAAAGGAAGAGAGAAATGT  400

seq1  AATTATAATTGCAAACAAAACAAAACAAAACAAAAACAAAAACCCAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATTGCAAACAAAACAAAACAAAACAAAAACAAAAACCCAAGGG  450

seq1  TCTTCCCACAAGATAATCCCTCAAAGGAATGCCTACAAGACTGTCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACAAGATAATCCCTCAAAGGAATGCCTACAAGACTGTCTCCCA  500

seq1  GGTGATTTTTAGGTCTTATTCAGTTGGCAATAATCCTAAAATCACAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTTAGGTCTTATTCAGTTGGCAATAATCCTAAAATCACAAGCT  550

seq1  GAAACATCTAGAAGGAACCAGAAAACCAGCCCATAAACGCAAAGGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCTAGAAGGAACCAGAAAACCAGCCCATAAACGCAAAGGTAAAT  600

seq1  AGCTATTTCGAAAATATTAGCATTACTAAGATGATTAGAAAAATTGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCGAAAATATTAGCATTACTAAGATGATTAGAAAAATTGAAGA  650

seq1  TTTGCGTGTTACAGTGCTTAGAATTTTGTATCCTTCACTATGTTTGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTGTTACAGTGCTTAGAATTTTGTATCCTTCACTATGTTTGTTAA  700

seq1  TAACTTATTAAAAACTTAGCAGAATTCAACAATTTTACAATTTCAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATTAAAAACTTAGCAGAATTCAACAATTTTACAATTTCAACCCA  750

seq1  AAGTTTTGTTTTGTTATTTTAATTTCTCTGTTGCCATATTACACATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGTTTTGTTATTTTAATTTCTCTGTTGCCATATTACACATCTGT  800

seq1  TCATTTGTTTGAGTTTTTCAAGTGCTCATGGCAGATGCACTGTGGATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTTGAGTTTTTCAAGTGCTCATGGCAGATGCACTGTGGATGTG  850

seq1  GAAAACTCTACATCTTCTCCAGTTCTCTTTTTTTATTTATATTTTGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCTACATCTTCTCCAGTTCTCTTTTTTTATTTATATTTTGTAAA  900

seq1  AATGGCAAAGTTAAGCCATTAACGGTCAGACAACTATTTGTAGCTTTCGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAAGTTAAGCCATTAACGGTCAGACAACTATTTGTAGCTTTCGA  950

seq1  TCTTTATGCAGATTAACATGGAAGTATCCATTTGCAAGAGGATGTGTTTT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTATGCAGATTAACATGGAAGTATCCATTTGC-AGAGGATGTGTTTT  999

seq1  CAGATGTTCAATATTATTAGTACTC-TCTCT-CTCTG-ATAAGCTTTTAT  1047
      ||||||||| ||| ||||||||||| ||||| ||||| ||||||||||||
seq2  CAGATGTTC-ATA-TATTAGTACTCTTCTCTCCTCTGAATAAGCTTTTAT  1047

seq1  TACTCATAGCGACACTTACACTTTCAGTTCATAAATCTATAG-AAATATT  1096
      ||||||||||||||||||||| ||||||||  | |||||||| |||||||
seq2  TACTCATAGCGACACTTACAC-TTCAGTTC-CATATCTATAGAAAATATT  1095

seq1  GTCCTATCTTTAAATGATTTCTATCATTTCATAAAAGGGTAGTTTGATCT  1146
      ||||||||||| |||||||||||||| ||||| ||| ||||||| |||||
seq2  GTCCTATCTTT-AATGATTTCTATCA-TTCAT-AAACGGTAGTTGGATCT  1142

seq1  AGGGATGCCTTCTTTTTTAATGGTCATT  1174
      ||||  |  | || ||||||| ||||||
seq2  AGGG--GAGTGCTCTTTTAAT-GTCATT  1167