BAC Information

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BAC

Clone NameB6Ng01-096J05
Chromosome13 (Build37)
Map Location 101,198,359 - 101,354,065
singlet/doubletdoublet
Overlap geneNaip1, Gtf2h2, Ocln, LOC667861
Upstream geneMtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838
Downstream geneMarveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096J05.bB6Ng01-096J05.g
ACCDH907186DH907187
length1,153377
definitionDH907186|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J05, 5' end.DH907187|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,198,359 - 101,199,520)(101,353,683 - 101,354,065)
sequence
gaattcctgtgtatcgaaggataacacttcgtcctcctttctccacttcc
caagtgaaaggagcctccacacacccctgacttcaaaatcatcctttttt
tctattctgggactctaaaagtctttccacacatagtttgttcagagctg
aagacctctttgtgtctattagggggatgtctagtagctgaacctcaatc
cttccacttacatcatacacaagaccttgggtttgatctcctcgattaca
gtaaagaacaaaaatctaataggaacatactcataattctgtcatttggt
agcaggaggattacagattcccagacagtctgcaatttgaaaatagcaag
ttcaaagtcagcctgagctgtacagtgagaacctgtcccaaacaaaattt
caaccaaacaaaatgaaacctgccttgcacatctcaaaagaagtaagaag
tcaagcccactgccctccagagattgaagatggggtccaggcagcttgga
tgattatcaggaataaggctgaaagaatttcaccaatagacttcttacag
ggaaaggggtggactgtgtgtttcatggagctagatattgggtcaccctc
attcactgagaagttcctgtctatacttatcacttgagagtactttctag
atacttgtagaatttccctaagtctgatacatttacaaatggcaagtgct
gttcacaaaagtgttccaccacacaaccatgtgctgctgaatcagaagag
ggcagtgttcattaccatggcttctggaagtgcacagtggctctgaaggg
ctggaatcactttctgcagaggacttcggggtttggagaaatacacagct
atgcagaggagagaaaatcgttctgttaagtgtttccattggcttttata
aaacatgaagattcagggccaagaatgaagtagaaagctaacattttcag
tgattctgtcagtgctgcactatataaacattcagccagtgctttcaata
acataataaatgtggttgtaaactatgggaaagatattcaggaatatgtt
ggatgagtacagagttatgtctgttcatgaatcagctaagaatgagctta
acgaataaaaatggtatctaaacttgggagcgaaccaagaattcactagg
gtg
caggacagccagtgctatacagagaaaccctgtctcaaaaaacaaaaaca
aacaaacaaaaaaacaaaacaaaaatctgatcttcatatgtaagtatgtg
gagactacccacacaggggcctataaagggcatagatgcatatacataca
aatgcacaacacacacacacacacacacacacacacacacacttggcaca
cacggaaaacaattctaaagatgtagttatagcaactgggtcaggggcca
cattcttcagggatgtagccactggtaccattcattaaatgcaaaggaga
aaggataaaattggaccatgaaaccaaaccatgaaaacggggagtggggg
gactgttggaaagaagtggggggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101198359_101199520
seq2: B6Ng01-096J05.b_45_1197

seq1  GAATTCCTGTGTATCGAAGGATAACACTTCGTCCTCCTTTCTCCACTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTATCGAAGGATAACACTTCGTCCTCCTTTCTCCACTTCC  50

seq1  CAAGTGAAAGGAGCCTCCACACACCCCTGACTTCAAAATCATCCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAAGGAGCCTCCACACACCCCTGACTTCAAAATCATCCTTTTTT  100

seq1  TCTATTCTGGGACTCTAAAAGTCTTTCCACACATAGTTTGTTCAGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTGGGACTCTAAAAGTCTTTCCACACATAGTTTGTTCAGAGCTG  150

seq1  AAGACCTCTTTGTGTCTATTAGGGGGATGTCTAGTAGCTGAACCTCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCTTTGTGTCTATTAGGGGGATGTCTAGTAGCTGAACCTCAATC  200

seq1  CTTCCACTTACATCATACACAAGACCTTGGGTTTGATCTCCTCGATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTTACATCATACACAAGACCTTGGGTTTGATCTCCTCGATTACA  250

seq1  GTAAAGAACAAAAATCTAATAGGAACATACTCATAATTCTGTCATTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAACAAAAATCTAATAGGAACATACTCATAATTCTGTCATTTGGT  300

seq1  AGCAGGAGGATTACAGATTCCCAGACAGTCTGCAATTTGAAAATAGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGGATTACAGATTCCCAGACAGTCTGCAATTTGAAAATAGCAAG  350

seq1  TTCAAAGTCAGCCTGAGCTGTACAGTGAGAACCTGTCCCAAACAAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCAGCCTGAGCTGTACAGTGAGAACCTGTCCCAAACAAAATTT  400

seq1  CAACCAAACAAAATGAAACCTGCCTTGCACATCTCAAAAGAAGTAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAACAAAATGAAACCTGCCTTGCACATCTCAAAAGAAGTAAGAAG  450

seq1  TCAAGCCCACTGCCCTCCAGAGATTGAAGATGGGGTCCAGGCAGCTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCCACTGCCCTCCAGAGATTGAAGATGGGGTCCAGGCAGCTTGGA  500

seq1  TGATTATCAGGAATAAGGCTGAAAGAATTTCACCAATAGACTTCTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATCAGGAATAAGGCTGAAAGAATTTCACCAATAGACTTCTTACAG  550

seq1  GGAAAGGGGTGGACTGTGTGTTTCATGGAGCTAGATATTGGGTCACCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGTGGACTGTGTGTTTCATGGAGCTAGATATTGGGTCACCCTC  600

seq1  ATTCACTGAGAAGTTCCTGTCTATACTTATCACTTGAGAGTACTTTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGAGAAGTTCCTGTCTATACTTATCACTTGAGAGTACTTTCTAG  650

seq1  ATACTTGTAGAATTTCCCTAAGTCTGATACATTTACAAATGGCAAGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTAGAATTTCCCTAAGTCTGATACATTTACAAATGGCAAGTGCT  700

seq1  GTTCACAAAAGTGTTCCACCACACAACCATGTGCTGCTGAATCAGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAAAGTGTTCCACCACACAACCATGTGCTGCTGAATCAGAAGAG  750

seq1  GGCAGTGTTCATTACCATGGCTTCTGGAAGTGCACAGTGGCTCTGAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTTCATTACCATGGCTTCTGGAAGTGCACAGTGGCTCTGAAGGG  800

seq1  CTGGAATCAC-TTCTGCAGAGGACTTCGGGGTTTGGAGAAATACACAGCT  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCACTTTCTGCAGAGGACTTCGGGGTTTGGAGAAATACACAGCT  850

seq1  ATGCAGAGGAGAGAAAATCGTTCTGTTAAGTGTTTCCATTGGCTTTTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGAGAGAAAATCGTTCTGTTAAGTGTTTCCATTGGCTTTTATA  900

seq1  AAACATGAAGATTCAGGGCCAAGAATGAAGTAGAAAGCTAACATTTTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAGATTCAGGGCCAAGAATGAAGTAGAAAGCTAACATTTTCAG  950

seq1  TGATTCTGTCAGTGCTGCACTATATAAACATTCAGCCAGTGGCTTTCAAT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGATTCTGTCAGTGCTGCACTATATAAACATTCAGCCAGT-GCTTTCAAT  999

seq1  AACATAATAAATGTGGTTTGTAAACTATTGGAAAGGATATTCAGGGAATA  1049
      |||||||||||||||| ||||||||||| ||||| |||||||| ||||||
seq2  AACATAATAAATGTGG-TTGTAAACTATGGGAAA-GATATTCA-GGAATA  1046

seq1  TGTTGGGATGAGTACAGAGTTATTGTCTGTCCATGAATCCAGCTAAG-AT  1098
      |||| ||||||||||||||||| ||||||| ||||||| |||||||| ||
seq2  TGTT-GGATGAGTACAGAGTTA-TGTCTGTTCATGAAT-CAGCTAAGAAT  1093

seq1  GAGCTTAACGAATAAAAATGGTAATCAACACTGTGGGAGCAGACACAAGG  1148
      |||||||||||||||||||||| ||| | ||| ||||||| || || | |
seq2  GAGCTTAACGAATAAAAATGGT-ATCTAAACT-TGGGAGC-GA-ACCAAG  1139

seq1  AGATCACTAGGGTG  1162
      |  |||||||||||
seq2  AATTCACTAGGGTG  1153

seq1: chr13_101353683_101354065
seq2: B6Ng01-096J05.g_66_448 (reverse)

seq1  CCAACCCCCCACTTCTTTCCAACAGTCCCCCCACTCCCCGTTTTCATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCCCACTTCTTTCCAACAGTCCCCCCACTCCCCGTTTTCATGGT  50

seq1  TTGGTTTCATGGTCCAATTTTATCCTTTCTCCTTTGCATTTAATGAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCATGGTCCAATTTTATCCTTTCTCCTTTGCATTTAATGAATGG  100

seq1  TACCAGTGGCTACATCCCTGAAGAATGTGGCCCCTGACCCAGTTGCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTGGCTACATCCCTGAAGAATGTGGCCCCTGACCCAGTTGCTATA  150

seq1  ACTACATCTTTAGAATTGTTTTCCGTGTGTGCCAAGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCTTTAGAATTGTTTTCCGTGTGTGCCAAGTGTGTGTGTGTGTG  200

seq1  TGTGTGTGTGTGTGTGTGTTGTGCATTTGTATGTATATGCATCTATGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTGTGCATTTGTATGTATATGCATCTATGCCC  250

seq1  TTTATAGGCCCCTGTGTGGGTAGTCTCCACATACTTACATATGAAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGCCCCTGTGTGGGTAGTCTCCACATACTTACATATGAAGATCA  300

seq1  GATTTTTGTTTTGTTTTTTTGTTTGTTTGTTTTTGTTTTTTGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTTTGTTTTTTTGTTTGTTTGTTTTTGTTTTTTGAGACAGGG  350

seq1  TTTCTCTGTATAGCACTGGCTGTCCTGGAATTC  383
      |||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCACTGGCTGTCCTGGAATTC  383