BAC Information

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BAC

Clone NameB6Ng01-096K15
Chromosome13 (Build37)
Map Location 40,698,033 - 40,792,320
singlet/doubletdoublet
Overlap geneLOC100039048
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
Downstream geneTcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K15.bB6Ng01-096K15.g
ACCDH907249DH907250
length1,1651,036
definitionDH907249|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K15, 5' end.DH907250|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,791,108 - 40,792,320)(40,698,033 - 40,699,070)
sequence
gaattcattttcttctccttagaggaggtgataataaaataaagagctga
taagccatcgggccagctgggagacgtgacttaagggttctggtactttc
tgtttaaggctaccagttccatgagcggagcacactcgtggaatgcttgg
gtgaagcagaggttcgatccccagcaccagtgaacaaaaatagatatggg
tagctgtcaaaaacagtgaggaggctggagagattgcttagctgctaaga
gaactggctgctctaacagaggacgaagattcaattcccaggaaccccat
ggcagctcacaactgtctgtaagttcagctcctatggttcttgtaatcac
ctcagactttcagtacgattaaataggtttgtttgtttctttaaagcata
ggtggtggtgtgtctggagagatgactcagaggttaagagcctttgctgt
tctggtagagtccctgggttcaattcccagcacccatgggtgacttacta
ccatccacaactccagttccaagggatactatgctttcttctgacatctt
tagatatcagacatgcattagtatgtatatatacatacaaacatacaaca
tacaaacatacagagtatacactcatacacataaatttaattaaaaaaaa
aaaaaagaaagaaagcaaaggcagtccagggacggtggtcagctccttta
atatctgtactcagaaggaggcagaagcaggctgttctctgtgaaatcca
ggccagtctggctggtgtctccaaaaatgtgacagtaaagcaccttatgc
tctgtgttgtggcacatgcctttaattccagcactcagggagtaggggca
ggaggatctctgagctcaaagtcagtctggtctacacactgagttccagg
atacccagggctatatagagaaacttgtcttgaaagcacaataaagagtt
aaaaaaaaagtagaaagaaagaggaagaaagagagaagaagaagaagagg
aagaaagaaagaaaggaaagaaataagaagaaggagaagaaagagaaaga
ggaggagaaagaagatagaagaggaaagaacaagaaaaatacagatgaga
accgactgactggagctgagttccacagtaggatgcctgctaatgcccac
tgggtgctgggttta
gaattcctttaagatgagaaaccaagaggtttgactctcttatggatagc
agaacagagacaacttcccctctgtctacctgtgggatccgagtttgtaa
gcaccaggcctctgcaagactaacaactcccacagaacgtggaatgtcat
gggataaataagtcaaagtgaatgtgcaatacagccgcactctcctctca
caaggacaacaaatgcaatgaatggccttgtccctccactagggaattca
tggaagaatggacttctagatgggccagaagtttgtgcaggacaataggt
caatgcacttccttcctcctaagaagggtggaatattctcaacagtagac
acatttctaggatttatggtttcgttattctagtgtcatatcttttgggg
ctggagagatggctcaggggttaagactgactgctcttccagaggtcctg
agttcaattcccagcaaccacatggtggctcacaaccatctctaatggga
tccaatgcactcttctgatgtgtgactgaagacagcaacagtgtattcat
ataaatgaaaataaatatataataaataaatatttttaaatatttcattt
taaataggttgtgaaggggattgggagacggtttaaaaaaaatcaaacca
atcaaaagatatttggggtgcatccaagcctggatccagaatttatatgt
ttaaaaggccagatgcagtagaacacacatttataagctcagcttattca
ccctgggagatggaaggtggggtcaggagaattgcttccaagctgctagc
cctgcccgatgtgtgccacagtgaacattaataaatgtctcaaacaaggg
gggtggggaagacccacattcaaggctgtcctctgacttaaacatgagtg
tcatggcacttctatgtccctaacatacacacattaagtaaatagggaaa
caattgaagagacatctgatgtggtctatgtatgcacacatgtgcacatg
catgctttgttgcacacacataaaagaaaaaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40791108_40792320
seq2: B6Ng01-096K15.b_44_1208 (reverse)

seq1  TAAACCCAGCACCACGTGGGCACTAAGCAGGCATCCTACTGTTGAACTTC  50
      |||||||||||||  ||||||| | ||||||||||||||||| |||| ||
seq2  TAAACCCAGCACCCAGTGGGCA-TTAGCAGGCATCCTACTGTGGAAC-TC  48

seq1  AGCTTCCAGTCATGTCTGTTTTCCTCCTTTCTTGTTTTTTTTCTTTGTTT  100
      ||| |||||||| ||| ||| || ||      ||| ||         |||
seq2  AGC-TCCAGTCA-GTCGGTTCTCATC------TGTATT---------TTT  81

seq1  CTTTTTCCTTTCT-TTCTTTCTTTCTTTCTTCCTTCCTTTCTTTCTTTCT  149
      ||| ||| || || |||| || ||||||||  | |||  ||||||  |||
seq2  CTTGTTCTTTCCTCTTCTATC-TTCTTTCT--CCTCC--TCTTTC--TCT  124

seq1  TTCTTTCTCCTTTCTCTCTTTCTTTCTTTTTCCTTTCTTTCTTTCTTTCC  199
      ||| |||||||   |||  || ||||  |||||||||||||||||||  |
seq2  TTC-TTCTCCT---TCTTCTTATTTC--TTTCCTTTCTTTCTTTCTT--C  166

seq1  TTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCCTTCTTTTCTTTTCTTACT  249
       ||||   |||||   ||||||||||| |||||   |||||||   ||| 
seq2  CTCTT--CTTCTT--CTTCTCTCTTTC-TTCCT--CTTTCTTT--CTAC-  206

seq1  TTTTTTTTTAACTCTTTTATTTGTTGCTTTTCAAGACAAGGTTTCTCTAT  299
      |||||||||||||| ||||||   ||| ||||||||||| ||||||||||
seq2  TTTTTTTTTAACTC-TTTATT--GTGC-TTTCAAGACAA-GTTTCTCTAT  251

seq1  ATAGCCCTGGGTATCCTGGAACTCAGTGTGTAGACCAGACTGACTTTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGGTATCCTGGAACTCAGTGTGTAGACCAGACTGACTTTGAG  301

seq1  CTCAGAGATCCTCCTGCCCCTACTCCCTGAGTGCTGGAATTAAAGGCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATCCTCCTGCCCCTACTCCCTGAGTGCTGGAATTAAAGGCATG  351

seq1  TGCCACAACACAGAGCATAAGGTGCTTTACTGTCACATTTTTGGAGACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACACAGAGCATAAGGTGCTTTACTGTCACATTTTTGGAGACAC  401

seq1  CAGCCAGACTGGCCTGGATTTCACAGAGAACAGCCTGCTTCTGCCTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGACTGGCCTGGATTTCACAGAGAACAGCCTGCTTCTGCCTCCTT  451

seq1  CTGAGTACAGATATTAAAGGAGCTGACCACCGTCCCTGGACTGCCTTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACAGATATTAAAGGAGCTGACCACCGTCCCTGGACTGCCTTTGC  501

seq1  TTTCTTTCTTTTTTTTTTTTTTAATTAAATTTATGTGTATGAGTGTATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTTTTTTTTTTAATTAAATTTATGTGTATGAGTGTATAC  551

seq1  TCTGTATGTTTGTATGTTGTATGTTTGTATGTATATATACATACTAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTTTGTATGTTGTATGTTTGTATGTATATATACATACTAATGC  601

seq1  ATGTCTGATATCTAAAGATGTCAGAAGAAAGCATAGTATCCCTTGGAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGATATCTAAAGATGTCAGAAGAAAGCATAGTATCCCTTGGAACT  651

seq1  GGAGTTGTGGATGGTAGTAAGTCACCCATGGGTGCTGGGAATTGAACCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGTGGATGGTAGTAAGTCACCCATGGGTGCTGGGAATTGAACCCA  701

seq1  GGGACTCTACCAGAACAGCAAAGGCTCTTAACCTCTGAGTCATCTCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTACCAGAACAGCAAAGGCTCTTAACCTCTGAGTCATCTCTCCA  751

seq1  GACACACCACCACCTATGCTTTAAAGAAACAAACAAACCTATTTAATCGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCACCACCTATGCTTTAAAGAAACAAACAAACCTATTTAATCGT  801

seq1  ACTGAAAGTCTGAGGTGATTACAAGAACCATAGGAGCTGAACTTACAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGTCTGAGGTGATTACAAGAACCATAGGAGCTGAACTTACAGAC  851

seq1  AGTTGTGAGCTGCCATGGGGTTCCTGGGAATTGAATCTTCGTCCTCTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGCTGCCATGGGGTTCCTGGGAATTGAATCTTCGTCCTCTGTT  901

seq1  AGAGCAGCCAGTTCTCTTAGCAGCTAAGCAATCTCTCCAGCCTCCTCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCCAGTTCTCTTAGCAGCTAAGCAATCTCTCCAGCCTCCTCACT  951

seq1  GTTTTTGACAGCTACCCATATCTATTTTTGTTCACTGGTGCTGGGGATCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGACAGCTACCCATATCTATTTTTGTTCACTGGTGCTGGGGATCG  1001

seq1  AACCTCTGCTTCACCCAAGCATTCCACGAGTGTGCTCCGCTCATGGAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGCTTCACCCAAGCATTCCACGAGTGTGCTCCGCTCATGGAACT  1051

seq1  GGTAGCCTTAAACAGAAAGTACCAGAACCCTTAAGTCACGTCTCCCAGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCTTAAACAGAAAGTACCAGAACCCTTAAGTCACGTCTCCCAGCT  1101

seq1  GGCCCGATGGCTTATCAGCTCTTTATTTTATTATCACCTCCTCTAAGGAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGATGGCTTATCAGCTCTTTATTTTATTATCACCTCCTCTAAGGAG  1151

seq1  AAGAAAATGAATTC  1213
      ||||||||||||||
seq2  AAGAAAATGAATTC  1165

seq1: chr13_40698033_40699070
seq2: B6Ng01-096K15.g_68_1103

seq1  GAATTCCTTTAAGATGAGAAACCAAGAGGTTTGACTCTCTTATGGATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAGATGAGAAACCAAGAGGTTTGACTCTCTTATGGATAGC  50

seq1  AGAACAGAGACAACTTCCCCTCTGTCTACCTGTGGGATCCGAGTTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAGACAACTTCCCCTCTGTCTACCTGTGGGATCCGAGTTTGTAA  100

seq1  GCACCAGGCCTCTGCAAGACTAACAACTCCCACAGAACGTGGAATGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGCCTCTGCAAGACTAACAACTCCCACAGAACGTGGAATGTCAT  150

seq1  GGGATAAATAAGTCAAAGTGAATGTGCAATACAGCCGCACTCTCCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAATAAGTCAAAGTGAATGTGCAATACAGCCGCACTCTCCTCTCA  200

seq1  CAAGGACAACAAATGCAATGAATGGCCTTGTCCCTCCACTAGGGAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAACAAATGCAATGAATGGCCTTGTCCCTCCACTAGGGAATTCA  250

seq1  TGGAAGAATGGACTTCTAGATGGGCCAGAAGTTTGTGCAGGACAATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATGGACTTCTAGATGGGCCAGAAGTTTGTGCAGGACAATAGGT  300

seq1  CAATGCACTTCCTTCCTCCTAAGAAGGGTGGAATATTCTCAACAGTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCACTTCCTTCCTCCTAAGAAGGGTGGAATATTCTCAACAGTAGAC  350

seq1  ACATTTCTAGGATTTATGGTTTCGTTATTCTAGTGTCATATCTTTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTAGGATTTATGGTTTCGTTATTCTAGTGTCATATCTTTTGGGG  400

seq1  CTGGAGAGATGGCTCAGGGGTTAAGACTGACTGCTCTTCCAGAGGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGGCTCAGGGGTTAAGACTGACTGCTCTTCCAGAGGTCCTG  450

seq1  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTCTAATGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTCTAATGGGA  500

seq1  TCCAATGCACTCTTCTGATGTGTGACTGAAGACAGCAACAGTGTATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCACTCTTCTGATGTGTGACTGAAGACAGCAACAGTGTATTCAT  550

seq1  ATAAATGAAAATAAATATATAATAAATAAATATTTTTAAATATTTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAAATAAATATATAATAAATAAATATTTTTAAATATTTCATTT  600

seq1  TAAATAGGTTGTGAAGGGGATTGGGAGACGGTTTAAAAAAAATCAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGTTGTGAAGGGGATTGGGAGACGGTTTAAAAAAAATCAAACCA  650

seq1  ATCAAAAGATATTTGGGGTGCATCCAAGCCTGGATCCAGAATTTATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGATATTTGGGGTGCATCCAAGCCTGGATCCAGAATTTATATGT  700

seq1  TTAAAAGGCCAGATGCAGTAGAACACACATTTATAAGCTCAGCTTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGCCAGATGCAGTAGAACACACATTTATAAGCTCAGCTTATTCA  750

seq1  CCCTGGGAGATGGAAGGTGGGGTCAGGAGAATTGCTTCCAAGCTGCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAGATGGAAGGTGGGGTCAGGAGAATTGCTTCCAAGCTGCTAGC  800

seq1  CCTGCCCGATGTGTGCCACAGTGAACATTAATAAATGTCTCAAACAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTGCCCGATGTGTGCCACAGTGAACATTAATAAATGTCTCAAACAAGGG  850

seq1  GGGTGGGGAAGACCAACATTCAAGGCTGTCCTCTGACCTACACATGAGTG  900
      |||||||||||||| |||||||||||||||||||||| || |||||||||
seq2  GGGTGGGGAAGACCCACATTCAAGGCTGTCCTCTGACTTAAACATGAGTG  900

seq1  TCATGGCACTTCTATGTCCCTAACATACACACATTAAGTAAATAAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCATGGCACTTCTATGTCCCTAACATACACACATTAAGTAAAT-AGGGAA  949

seq1  ACAATTGAAGAAGACATCTGATGTTGGTCTATGTATGCACACATGTGCAC  1000
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAATTGAAG-AGACATCTGATG-TGGTCTATGTATGCACACATGTGCAC  997

seq1  ATGCATGCTT--GTGCACACACATAAAAGAAAAAGAGAGA  1038
      ||||||||||   |||||||||||||||||||||| ||||
seq2  ATGCATGCTTTGTTGCACACACATAAAAGAAAAAG-GAGA  1036