BAC Information

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BAC

Clone NameB6Ng01-097D07
Chromosome5 (Build37)13 (Build37)
Map Location 129,601,618 - 129,601,8487,560,876 - 7,561,519
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem132d, Fzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441
Downstream geneGpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097D07.bB6Ng01-097D07.g
ACCDH907641DH907642
length218644
definitionDH907641|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D07, 5' end.DH907642|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,601,618 - 129,601,848)(7,560,876 - 7,561,519)
sequence
tgcctcatccaccaaatgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtatgtgtgtacatacatatgtatgtaggtatatgtgtatg
tatagaagtatgcatgtgcacttttgaaattgatggaccaggtagtcagg
cccaaacagtgtgtgtacatgtgtatgtgtgtgtggctgacttactttct
tccttttctttttccctc
gaattctctgcccttgatctacagaccagagatcagatacagcctggcta
caggctcctgccatgaaaccttcttccctttgtctgagaccttgaagaca
agaacactctgcctcctgggtctgaactctcatcagaacctcactagact
gtctgcctacctatgaccactagacccttctcagaccctggcactcagct
atcactctgtgttcttgtcattatccacctcagtgtggctccttaactgc
agacctgtgacttttcaagaataaaacaaggaggcaaatgcttatgtatc
tttcagctcatctcatgttacattgggtaccatggcatatgtagttctca
catgaagctagctccccaccccccacatatatagcagaagtgtagtttgg
tcttcatgtgggtgccccaacaactgtagcaggggctgtcgctgatctat
tgcctgcctgtggatcctgttcttggtcttgtctgggcttcctgttcatg
cctcggtggatgaggttatgcctaatcttgcatgaattgatgtgccagaa
tgagttggtacccagtggggtcctcctccttctcaaaggagaaggagagg
ggaagatggggaggggccatttgagagggtatgggagggaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_129601618_129601848
seq2: B6Ng01-097D07.b_65_236 (reverse)

seq1  ACACACACATACACACAT-CACATAC-ATACACACATCAC--ACACATAC  46
      |||||||||||||||  | |||| ||  |     | | ||   |   | |
seq2  ACACACACATACACATGTACACACACTGTTTGGGCCTGACTACCTGGTCC  50

seq1  ATGTATCACA------CACATACATACATCACATA-ATACACACATCACA  89
      ||  ||  ||      ||||| ||||| ||  ||| ||||||| || || 
seq2  ATCAATTTCAAAAGTGCACATGCATACTTC-TATACATACACATAT-ACC  98

seq1  TGCATACATGCATGACATGCATACACACAT-CAAACACATACACACATCA  138
      | |||||||  |||  |||  ||||||||| || ||||| ||||||| ||
seq2  TACATACAT--ATG-TATG--TACACACATACACACACACACACACA-CA  142

seq1  AACACACACACACATCACACACATACATATATCACATGCATATACATTGT  188
       |||||||||||||| ||||||| |||| |                    
seq2  CACACACACACACAT-ACACACACACATTTG-------------------  172

seq1  CCCCCCATTTCTACAGAACCACACTCATACACACACACATTTG  231
                                                 
seq2  -------------------------------------------  172

seq1: chr13_7560876_7561519
seq2: B6Ng01-097D07.g_67_710

seq1  GAATTCTCTGCCCTTGATCTACAGACCAGAGATCAGATACAGCCTGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCTTGATCTACAGACCAGAGATCAGATACAGCCTGGCTA  50

seq1  CAGGCTCCTGCCATGAAACCTTCTTCCCTTTGTCTGAGACCTTGAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTGCCATGAAACCTTCTTCCCTTTGTCTGAGACCTTGAAGACA  100

seq1  AGAACACTCTGCCTCCTGGGTCTGAACTCTCATCAGAACCTCACTAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTCTGCCTCCTGGGTCTGAACTCTCATCAGAACCTCACTAGACT  150

seq1  GTCTGCCTACCTATGACCACTAGACCCTTCTCAGACCCTGGCACTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTACCTATGACCACTAGACCCTTCTCAGACCCTGGCACTCAGCT  200

seq1  ATCACTCTGTGTTCTTGTCATTATCCACCTCAGTGTGGCTCCTTAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTGTGTTCTTGTCATTATCCACCTCAGTGTGGCTCCTTAACTGC  250

seq1  AGACCTGTGACTTTTCAAGAATAAAACAAGGAGGCAAATGCTTATGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTGACTTTTCAAGAATAAAACAAGGAGGCAAATGCTTATGTATC  300

seq1  TTTCAGCTCATCTCATGTTACATTGGGTACCATGGCATATGTAGTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCATCTCATGTTACATTGGGTACCATGGCATATGTAGTTCTCA  350

seq1  CATGAAGCTAGCTCCCCACCCCCCACATATATAGCAGAAGTGTAGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCTAGCTCCCCACCCCCCACATATATAGCAGAAGTGTAGTTTGG  400

seq1  TCTTCATGTGGGTGCCCCAACAACTGTAGCAGGGGCTGTCGCTGATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTGGGTGCCCCAACAACTGTAGCAGGGGCTGTCGCTGATCTAT  450

seq1  TGCCTGCCTGTGGATCCTGTTCTTGGTCTTGTCTGGGCTTCCTGTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTGTGGATCCTGTTCTTGGTCTTGTCTGGGCTTCCTGTTCATG  500

seq1  CCTCGGTGGATGAGGTTATGCCTAATCTTGCATGAATTGATGTGCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTGGATGAGGTTATGCCTAATCTTGCATGAATTGATGTGCCAGAA  550

seq1  TGAGTTGGTACCCAGTGGGGTCCTCCTCCTTCTCAAAGGAGAAGGAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGTACCCAGTGGGGTCCTCCTCCTTCTCAAAGGAGAAGGAGAGG  600

seq1  GGAAGATGGGGAGGGGCCATTTGAGAGGGTATGGGAGGGAGGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGGGAGGGGCCATTTGAGAGGGTATGGGAGGGAGGCT  644