BAC Information

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BAC

Clone NameB6Ng01-097P10
Chromosome13 (Build37)
Map Location 102,528,610 - 102,707,685
singlet/doubletdoublet
Overlap genePik3r1
Upstream geneCenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream geneCd180, Mast4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097P10.bB6Ng01-097P10.g
ACCDH908191DH908192
length1,1201,101
definitionDH908191|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P10, 5' end.DH908192|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,528,610 - 102,529,735)(102,706,578 - 102,707,685)
sequence
gaattccagtctgacctcaatgcccaggggggacaggcacggggagagaa
tggtggtaagggctcctgagaaaggagagggcagagactagagaggcagc
agcagcaggtctataaaggtgcataccgcagtaggacagtaggaagggag
acactgtggaaggtgaaaaacgctctctggaggaagcaggagcatcatgt
gcctgatcctgtgtggctgggaattccctaccaatgtcaggcgaagaaaa
gaggacagatgggctcatgggatagaagcatccactgcaggggtgccacg
gatgggccaaaaactctggctgaagacaggagtatacctgaggttttgtg
agtagctgcaaaataaagttgggactgattacagtgagatgtgaaaaaca
tacgagtgtacacacacaaacacacacacacacacacacagagacagaga
ggacagaaagcgggtgggggtagagatccacaaatacaaaaacattgtgg
ttcaatcacactgagaagaaaagtcaaggcttagatacaaagtaaaccct
agaaagatcaggtaaacacaggggacccccccccccacaggtcagagcct
tgcagaaactccacacatgggagactgaattcctgcctgatcagtattca
ggcctctctgctcatgcaggaaccctcagtgtctgagatcccaggcttgc
aggccagccatgaggatggtaactagacttcatttcttgagttaagaaac
aaaaggaagtagccatgctgactgctacggaagtactatgtaaaacaggt
ttggtggaggccaggcttttttttgccaaaagcaaactgagggcagagca
actggtgagccctaaggtaaagagaactgggagtcagcactgatagctac
caggacagtatgcagcagagatgcacccccactgtacttctcagtgttag
ctttactgcagagctaaactcaagctaagggtccagttcaccaatggtac
agtgagcaactcaataagataaaataataacggccgaatgatctcttggg
gccccatcaaagggactttttttagtccacagagtgcctgccagccactt
ggaagctgagatctcaggca
gaattcctcacaggggctctacattcctcgggctcagacatgattaaaca
ccgtacctttttaaatgttttactattccaagcagagggaatacataaat
aagcgctttccagttaccacgcctcagcctggaatttcagccaagtgttt
tctgtccttcgatctactttgaccagactctaaataagaggggggggggc
gacaaataagaagaaattttcctcactagataaccctagactcaggatgg
aagagtatgctgtaaggttgaggggccggagcactcaatcacatggaagc
catgtttctcccactggcctgttgtaagacaataaagttgtcactacctg
agaaactgaaagagtttggactctctgagctgtagaataaggttctacct
cttctcttcctgtagctgtattgagagagacagtgggcttttcctgaaca
aacaggaccaatgtgtagattacataattcactaatctagaagtagtctg
tacaaaggacagctgtatcaagctctgcctggcagaaaggactggtacct
gaattgcctactctagccctgacctgtcactctgttcttccactctcacc
ctgttcaggtgccagacagaagtgtcttcaagttgctcccagcacaaggg
tcctgcttaagtcacaaagaccctttcatctctgctttcccttctcacct
ctattccttctctttcttctacttctcattctaatattctgtgctttcaa
ctcacaattttaaggctcattctcgcctaagacaattccgtgtgaatcat
aggacagtagtttttaaacttcagtcttcaaaccatttgtctcagaacaa
agtgtaagtttttaaagctccaaacgagacacacaggacaagcatcctgc
cgtggtgaaaggctggaacttgcatttttgaaagtcccacagttgacttc
atgctcactggggctggataccctggagcagagactacaaactgggcaga
ggtgcttctttttagaatctcagcagtcccaccatgacttgtcacctccg
tctctcagctcatgaaagggcttaggccaacaaagttcactcagttctgg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102528610_102529735
seq2: B6Ng01-097P10.b_45_1164

seq1  GAATTCCAGTCTGACCTCAATGCCCAGGGGGGACAGGCACGGGGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCTGACCTCAATGCCCAGGGGGGACAGGCACGGGGAGAGAA  50

seq1  TGGTGGTAAGGGCTCCTGAGAAAGGAGAGGGCAGAGACTAGAGAGGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAAGGGCTCCTGAGAAAGGAGAGGGCAGAGACTAGAGAGGCAGC  100

seq1  AGCAGCAGGTCTATAAAGGTGCATACCGCAGTAGGACAGTAGGAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGGTCTATAAAGGTGCATACCGCAGTAGGACAGTAGGAAGGGAG  150

seq1  ACACTGTGGAAGGTGAAAAACGCTCTCTGGAGGAAGCAGGAGCATCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGGAAGGTGAAAAACGCTCTCTGGAGGAAGCAGGAGCATCATGT  200

seq1  GCCTGATCCTGTGTGGCTGGGAATTCCCTACCAATGTCAGGCGAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATCCTGTGTGGCTGGGAATTCCCTACCAATGTCAGGCGAAGAAAA  250

seq1  GAGGACAGATGGGCTCATGGGATAGAAGCATCCACTGCAGGGGTGCCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGATGGGCTCATGGGATAGAAGCATCCACTGCAGGGGTGCCACG  300

seq1  GATGGGCCAAAAACTCTGGCTGAAGACAGGAGTATACCTGAGGTTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCCAAAAACTCTGGCTGAAGACAGGAGTATACCTGAGGTTTTGTG  350

seq1  AGTAGCTGCAAAATAAAGTTGGGACTGATTACAGTGAGATGTGAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGCAAAATAAAGTTGGGACTGATTACAGTGAGATGTGAAAAACA  400

seq1  TACGAGTGTACACACACAAACACACACACACACACACACAGAGACAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGTGTACACACACAAACACACACACACACACACACAGAGACAGAGA  450

seq1  GGACAGAAAGCGGGTGGGGGTAGAGATCCACAAATACAAAAACATTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAAGCGGGTGGGGGTAGAGATCCACAAATACAAAAACATTGTGG  500

seq1  TTCAATCACACTGAGAAGAAAAGTCAAGGCTTAGATACAAAGTAAACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCACACTGAGAAGAAAAGTCAAGGCTTAGATACAAAGTAAACCCT  550

seq1  AGAAAGATCAGGTAAACACAGGGGACCCCCCCCCCCACAGGTCAGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATCAGGTAAACACAGGGGACCCCCCCCCCCACAGGTCAGAGCCT  600

seq1  TGCAGAAACTCCACACATGGGAGACTGAATTCCTGCCTGATCAGTATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACTCCACACATGGGAGACTGAATTCCTGCCTGATCAGTATTCA  650

seq1  GGCCTCTCTGCTCATGCAGGAACCCTCAGTGTCTGAGATCCCAGGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTGCTCATGCAGGAACCCTCAGTGTCTGAGATCCCAGGCTTGC  700

seq1  AGGCCAGCCATGAGGATGGTAACTAGACTTCATTTCTTGAGTTAAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCATGAGGATGGTAACTAGACTTCATTTCTTGAGTTAAGAAAC  750

seq1  AAAAGGAAGTAGCCATGCTGACTGCTACGGAAGTACTATGTAAAACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGTAGCCATGCTGACTGCTACGGAAGTACTATGTAAAACAGGT  800

seq1  TTGGTGGAGGCCAGGCTTTTATTTGCC-AAAGCAAACTGAGGGCAGAGCA  849
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TTGGTGGAGGCCAGGCTTTTTTTTGCCAAAAGCAAACTGAGGGCAGAGCA  850

seq1  ACTGGTGAGCC--AAAGTTAAGAGAACTGGGAGTCAGCACTGATAGCTAC  897
      |||||||||||  || || |||||||||||||||||||||||||||||||
seq2  ACTGGTGAGCCCTAAGGTAAAGAGAACTGGGAGTCAGCACTGATAGCTAC  900

seq1  CAGGACAGTATGCAGCAGAGATGCA-CCCCACTGTACTTCTCAGTGTTAG  946
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGGACAGTATGCAGCAGAGATGCACCCCCACTGTACTTCTCAGTGTTAG  950

seq1  CTTTACTGCAGAGGCTAAACTCAAGCTAAAGGTTCCAGTTCACCAATGGT  996
      |||||||||||| |||||||||||||| |||| |||||||||||||||||
seq2  CTTTACTGCAGA-GCTAAACTCAAGCT-AAGGGTCCAGTTCACCAATGGT  998

seq1  ACAGTGAAGCAACTCAAAAAAAAAAAAAAAAAAAAAAAAACAGCCGAGTG  1046
      |||||| ||||||||       || || | |||| || ||| ||||| ||
seq2  ACAGTG-AGCAACTC-------AATAAGATAAAATAATAACGGCCGAATG  1040

seq1  ATCTCTTGGTGCCCCATCAAAGGGACTTTTCTAAGTCCACAGAGTGCATG  1096
      ||||||||| |||||||||||||||||||| | |||||||||||||| ||
seq2  ATCTCTTGGGGCCCCATCAAAGGGACTTTTTTTAGTCCACAGAGTGCCTG  1090

seq1  -CAG-CACTTGGGAGGCTGAGTTCTCCAGGCA  1126
       ||| ||||| ||| |||||| ||| ||||||
seq2  CCAGCCACTT-GGAAGCTGAGATCT-CAGGCA  1120

seq1: chr13_102706578_102707685
seq2: B6Ng01-097P10.g_70_1170 (reverse)

seq1  ACCAGAACACTGAGGTGAACTTGGTATTGGCCCAAAGCCCTTTCATGGAG  50
      ||||||  ||||| ||||||||  | |||| || |||||||||||| |||
seq2  ACCAGA--ACTGA-GTGAACTT--TGTTGG-CCTAAGCCCTTTCAT-GAG  43

seq1  CTGAGAG-CGGAGGTGAC-AGTCATGGTGGGACTGCCTGAGATTCTGAAA  98
      ||||||| |||||||||| |||||||||||||||| |||||||||| |||
seq2  CTGAGAGACGGAGGTGACAAGTCATGGTGGGACTG-CTGAGATTCTAAAA  92

seq1  AGAAGCCACCTCTGCCCAGTTTGTAGTTCTCTGCTCCAGGGTATCCAGCC  148
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAAG-CACCTCTGCCCAGTTTGTAG-TCTCTGCTCCAGGGTATCCAGCC  140

seq1  CCAGTGAGCACTGAAGTCACCTGTGGGACTTTCAAAAATGCAAGTTCCAG  198
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  CCAGTGAGCA-TGAAGTCAACTGTGGGACTTTCAAAAATGCAAGTTCCAG  189

seq1  CCTTTCACCACGGCAGGATGCTTGTCCTGTGTGTCTCGTTTGGAGCTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCACGGCAGGATGCTTGTCCTGTGTGTCTCGTTTGGAGCTTTA  239

seq1  AAAACTTACACTTTGTTCTGAGACAAATGGTTTGAAGACTGAAGTTTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTACACTTTGTTCTGAGACAAATGGTTTGAAGACTGAAGTTTAAA  289

seq1  AACTACTGTCCTATGATTCACACGGAATTGTCTTAGGCGAGAATGAGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGTCCTATGATTCACACGGAATTGTCTTAGGCGAGAATGAGCCT  339

seq1  T-AAATTGTGAGTTGAAAGCACAGAATATTAGAATGAGAAGTAGAAG-AA  396
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAAATTGTGAGTTGAAAGCACAGAATATTAGAATGAGAAGTAGAAGAAA  389

seq1  GAGAAGGAATAGAGGTGAGAAGGGAAAGCAGAGATGAAAGGGTCTTTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAATAGAGGTGAGAAGGGAAAGCAGAGATGAAAGGGTCTTTGTG  439

seq1  ACTTAAGCAGGACCCTTGTGCTGGGAGCAACTTGAAGACACTTCTGTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGCAGGACCCTTGTGCTGGGAGCAACTTGAAGACACTTCTGTCTG  489

seq1  GCACCTGAACAGGGTGAGAGTGGAAGAACAGAGTGACAGGTCAGGGCTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGAACAGGGTGAGAGTGGAAGAACAGAGTGACAGGTCAGGGCTAG  539

seq1  AGTAGGCAATTCAGGTACCAGTCCTTTCTGCCAGGCAGAGCTTGATACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCAATTCAGGTACCAGTCCTTTCTGCCAGGCAGAGCTTGATACAG  589

seq1  CTGTCCTTTGTACAGACTACTTCTAGATTAGTGAATTATGTAATCTACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTGTACAGACTACTTCTAGATTAGTGAATTATGTAATCTACAC  639

seq1  ATTGGTCCTGTTTGTTCAGGAAAAGCCCACTGTCTCTCTCAATACAGCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCCTGTTTGTTCAGGAAAAGCCCACTGTCTCTCTCAATACAGCTA  689

seq1  CAGGAAGAGAAGAGGTAGAACCTTATTCTACAGCTCAGAGAGTCCAAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAGAAGAGGTAGAACCTTATTCTACAGCTCAGAGAGTCCAAACT  739

seq1  CTTTCAGTTTCTCAGGTAGTGACAACTTTATTGTCTTACAACAGGCCAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTTTCTCAGGTAGTGACAACTTTATTGTCTTACAACAGGCCAGT  789

seq1  GGGAGAAACATGGCTTCCATGTGATTGAGTGCTCCGGCCCCTCAACCTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAACATGGCTTCCATGTGATTGAGTGCTCCGGCCCCTCAACCTTA  839

seq1  CAGCATACTCTTCCATCCTGAGTCTAGGGTTATCTAGTGAGGAAAATTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACTCTTCCATCCTGAGTCTAGGGTTATCTAGTGAGGAAAATTTC  889

seq1  TTCTTATTTGTCGCCCCCCCCCCTCTTATTTAGAGTCTGGTCAAAGTAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTGTCGCCCCCCCCCCTCTTATTTAGAGTCTGGTCAAAGTAGA  939

seq1  TCGAAGGACAGAAAACACTTGGCTGAAATTCCAGGCTGAGGCGTGGTAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGGACAGAAAACACTTGGCTGAAATTCCAGGCTGAGGCGTGGTAAC  989

seq1  TGGAAAGCGCTTATTTATGTATTCCCTCTGCTTGGAATAGTAAAACATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCGCTTATTTATGTATTCCCTCTGCTTGGAATAGTAAAACATTT  1039

seq1  AAAAAGGTACGGTGTTTAATCATGTCTGAGCCCGAGGAATGTAGAGCCCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTACGGTGTTTAATCATGTCTGAGCCCGAGGAATGTAGAGCCCC  1089

seq1  TGTGAGGAATTC  1108
      ||||||||||||
seq2  TGTGAGGAATTC  1101