BAC Information

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BAC

Clone NameB6Ng01-098C02
Chromosome13 (Build37)
Map Location 56,646,523 - 56,867,772
singlet/doubletdoublet
Overlap geneLect2, Tgfbi, Smad5, EG627415
Upstream geneBC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21
Downstream geneTrpc7, LOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098C02.bB6Ng01-098C02.g
ACCDH908308DH908309
length8041,007
definitionDH908308|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C02, 5' end.DH908309|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,866,967 - 56,867,772)(56,646,523 - 56,647,533)
sequence
gaattccagccaccgaacctctgactcactattttttcccatgcccagac
ctgagtgagcacaggaagtggctccttggatcactttaatgatcacagag
aacagagccccggggtttcagctctgaaccaatcaatcacagaaaggcac
cagcaaagtggatcccttaacgccttccctatctacagagctaaattagc
tgtccccaagcccgggagccctctatcagagcgttactggtttctcagga
tcacatgcagacaagtgtgtcactgtctgtcaccagcagtatgaatagca
tgaatattctgtgctttagaaaaggccatgtatctcatggtagttctcct
ccagggatgcagatgaatttgatgttctgagacgcccgagatggtctgtc
tcggagcacagtgcagagccgcatgatctaacttggactgaggcttcagg
gagagggaggaaaggatggcgcttcccggaactgagcacaggttctcaga
gcggctcacaaacagctggcataaatgctgctgaccacacagtctgcctc
ctgcccaaaccaaggcgacttgtcctgaggttaaacaaaggcccacgcgg
ggaagggggatgcagggggaggggcacacttccggaggaaacaggaggag
cgcacagacatatgagaatcatatgtgaatcagatttttgttgctgtgac
agctgaccaaaactactcaaggaagatttgtttacttctggttgcagagg
gggctggtactccttgatattaggaaaggcgtgggctgactgcaaggagc
agga
gaattccactcttgcacaatggacagttttgttcacatattggatctcaa
tagaattcaaatgaacaaagccagtgcagaccctggggaccagccttacc
aaacagaggcattcagaaatagtttgcattcaactgctgcagaagttagt
gaattgtgggattctggtaaatggaggtgtgtgtgtctgttgtgaatatc
agttctgcccagacaatcttctaagcaaaaatacctgggccacagaaggg
gacagccaggtcagctgtggaggttggtgatctttttacatagacaggct
ttggggaaatatgaggcaccttctgttttgtgcttgggttgtcctgtatg
ttctagatcttactatcttggaagaaacatgaaacttctgtgtttggaac
ctgtattaaataactaagcctcagcacctggaccgtgtcccagattgata
ctcttacctcttccagacagtcgaatgccatcattgatggcatttttgtt
tctatagggtttctcctggcccactatcttcccagtgaatggtgcataca
ccacagatccatccgagcacaggacgtccacacctgggtgatgcctttgg
gttctagaatataaataagtgccatcagagggggtgtcccaggaaaaggc
attgccaggattgtgttcttggtgcacagctcccagccttgggcatcaaa
acttgaagcagccagaagatgttgcagtgcacgggatattttactctgtt
tagcccagttttagtctctctgtccacatgcactaatgatcatattataa
aagattgaattatttaaaaatcatattttgatttacaataagccttagat
agtaagaacaacacaacaataatgtttaaggtttataataatattatcat
taatatgtggtatttggaaacaacgtgtacaatatattttttgatctgga
ctcttcgaggcttttatttttcattgtaggagtcaaacccagggcctgct
tgggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56866967_56867772
seq2: B6Ng01-098C02.b_37_840 (reverse)

seq1  TCCTGCTCCTTGCCGTCAGCCCACGCCTTCCCTGCTATCATGGAGT-CCA  49
      ||||||||||||| ||||||||||||||| |||  ||||| ||||| |||
seq2  TCCTGCTCCTTGCAGTCAGCCCACGCCTTTCCTAATATCAAGGAGTACCA  50

seq1  GCCCCCTCTGCAACCAGAAGCTAAAACAAACTCTTCCTTGAGTAGTTTTG  99
      ||||||||||||||||||||   ||||||| |||||||||||||||||||
seq2  GCCCCCTCTGCAACCAGAAG--TAAACAAA-TCTTCCTTGAGTAGTTTTG  97

seq1  GTCATGCTGTCACAGCAACAAAAATCCTGATTCACATATGATTCTCATAT  149
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCA-GCTGTCACAGCAACAAAAAT-CTGATTCACATATGATTCTCATAT  145

seq1  GTCTGTGCGCTCCTCCTGTTTCCTCCGGAAGTGTGCCCCTCCCCCTGCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCGCTCCTCCTGTTTCCTCCGGAAGTGTGCCCCTCCCCCTGCAT  195

seq1  -CCCCTTCCCCGCGTGGGCCTTTGTTTAACCTCAGGACAAGTCGCCTTGG  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCCCGCGTGGGCCTTTGTTTAACCTCAGGACAAGTCGCCTTGG  245

seq1  TTTGGGCAGGAGGCAGACTGTGTGGTCAGCAGCATTTATGCCAGCTGTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCAGGAGGCAGACTGTGTGGTCAGCAGCATTTATGCCAGCTGTTT  295

seq1  GTGAGCCGCTCTGAGAACCTGTGCTCAGTTCCGGGAAGCGCCATCCTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCGCTCTGAGAACCTGTGCTCAGTTCCGGGAAGCGCCATCCTTTC  345

seq1  CTCCCTCTCCCTGAAGCCTCAGTCCAAGTTAGATCATGCGGCTCTGCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCCCTGAAGCCTCAGTCCAAGTTAGATCATGCGGCTCTGCACT  395

seq1  GTGCTCCGAGACAGACCATCTCGGGCGTCTCAGAACATCAAATTCATCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCGAGACAGACCATCTCGGGCGTCTCAGAACATCAAATTCATCTG  445

seq1  CATCCCTGGAGGAGAACTACCATGAGATACATGGCCTTTTCTAAAGCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGAGGAGAACTACCATGAGATACATGGCCTTTTCTAAAGCACA  495

seq1  GAATATTCATGCTATTCATACTGCTGGTGACAGACAGTGACACACTTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCATGCTATTCATACTGCTGGTGACAGACAGTGACACACTTGTC  545

seq1  TGCATGTGATCCTGAGAAACCAGTAACGCTCTGATAGAGGGCTCCCGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGATCCTGAGAAACCAGTAACGCTCTGATAGAGGGCTCCCGGGC  595

seq1  TTGGGGACAGCTAATTTAGCTCTGTAGATAGGGAAGGCGTTAAGGGATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACAGCTAATTTAGCTCTGTAGATAGGGAAGGCGTTAAGGGATCC  645

seq1  ACTTTGCTGGTGCCTTTCTGTGATTGATTGGTTCAGAGCTGAAACCCCGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGGTGCCTTTCTGTGATTGATTGGTTCAGAGCTGAAACCCCGG  695

seq1  GGCTCTGTTCTCTGTGATCATTAAAGTGATCCAAGGAGCCACTTCCTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTTCTCTGTGATCATTAAAGTGATCCAAGGAGCCACTTCCTGTG  745

seq1  CTCACTCAGGTCTGGGCATGGG-AAAATTAGTGAGTCAGAGGTTCGGTGG  797
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CTCACTCAGGTCTGGGCATGGGAAAAAATAGTGAGTCAGAGGTTCGGTGG  795

seq1  CTGGAATTC  806
      |||||||||
seq2  CTGGAATTC  804

seq1: chr13_56646523_56647533
seq2: B6Ng01-098C02.g_65_1071

seq1  GAATTCCACTCTTGCACAATGGACAGTTTTGTTCACATATTGGATCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTTGCACAATGGACAGTTTTGTTCACATATTGGATCTCAA  50

seq1  TAGAATTCAAATGAACAAAGCCAGTGCAGACCCTGGGGACCAGCCTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCAAATGAACAAAGCCAGTGCAGACCCTGGGGACCAGCCTTACC  100

seq1  AAACAGAGGCATTCAGAAATAGTTTGCATTCAACTGCTGCAGAAGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGCATTCAGAAATAGTTTGCATTCAACTGCTGCAGAAGTTAGT  150

seq1  GAATTGTGGGATTCTGGTAAATGGAGGTGTGTGTGTCTGTTGTGAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGGGATTCTGGTAAATGGAGGTGTGTGTGTCTGTTGTGAATATC  200

seq1  AGTTCTGCCCAGACAATCTTCTAAGCAAAAATACCTGGGCCACAGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCCCAGACAATCTTCTAAGCAAAAATACCTGGGCCACAGAAGGG  250

seq1  GACAGCCAGGTCAGCTGTGGAGGTTGGTGATCTTTTTACATAGACAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGTCAGCTGTGGAGGTTGGTGATCTTTTTACATAGACAGGCT  300

seq1  TTGGGGAAATATGAGGCACCTTCTGTTTTGTGCTTGGGTTGTCCTGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAATATGAGGCACCTTCTGTTTTGTGCTTGGGTTGTCCTGTATG  350

seq1  TTCTAGATCTTACTATCTTGGAAGAAACATGAAACTTCTGTGTTTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATCTTACTATCTTGGAAGAAACATGAAACTTCTGTGTTTGGAAC  400

seq1  CTGTATTAAATAACTAAGCCTCAGCACCTGGACCGTGTCCCAGATTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTAAATAACTAAGCCTCAGCACCTGGACCGTGTCCCAGATTGATA  450

seq1  CTCTTACCTCTTCCAGACAGTCGAATGCCATCATTGATGGCATTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCTCTTCCAGACAGTCGAATGCCATCATTGATGGCATTTTTGTT  500

seq1  TCTATAGGGTTTCTCCTGGCCCACTATCTTCCCAGTGAATGGTGCATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGTTTCTCCTGGCCCACTATCTTCCCAGTGAATGGTGCATACA  550

seq1  CCACAGATCCATCCGAGCACAGGACGTCCACACCTGGGTGATGCCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATCCATCCGAGCACAGGACGTCCACACCTGGGTGATGCCTTTGG  600

seq1  GTTCTAGAATATAAATAAGTGCCATCAGAGGGGGTGTCCCAGGAAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGAATATAAATAAGTGCCATCAGAGGGGGTGTCCCAGGAAAAGGC  650

seq1  ATTGCCAGGATTGTGTTCTTGGTGCACAGCTCCCAGCCTTGGGCATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGGATTGTGTTCTTGGTGCACAGCTCCCAGCCTTGGGCATCAAA  700

seq1  ACTTGAAGCAGCCAGAAGATGTTGCAGTGCACGGGATATTTTACTCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGCAGCCAGAAGATGTTGCAGTGCACGGGATATTTTACTCTGTT  750

seq1  TAGCCCAGTTTTAGTCTCTCTGTCCACATGCACTAATGATCATATTAT-A  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGCCCAGTTTTAGTCTCTCTGTCCACATGCACTAATGATCATATTATAA  800

seq1  AAGATTGAATTATTTAAAAATCATA-TTTGATTTACAATAAGCCTTAGAT  848
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGATTGAATTATTTAAAAATCATATTTTGATTTACAATAAGCCTTAGAT  850

seq1  AGTAAGAACAACAACAACAATAATGTTTAAGGTTTATAATAATATTATCA  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAACAAC-ACAACAATAATGTTTAAGGTTTATAATAATATTATCA  899

seq1  TTATTATGTGGTATTTGGAAAACAACGTGTACAAATATATTTTTTGAATC  948
      ||| |||||||||||||| ||||||||||||| ||||||||||||| |||
seq2  TTAATATGTGGTATTTGG-AAACAACGTGTAC-AATATATTTTTTG-ATC  946

seq1  TTGACTCCTTCGAGGCCTTTTATTTTTCATTGTTGGGAGTCAAACCCAGG  998
      | |||| |||||||| |||||||||||||||| | |||||||||||||||
seq2  TGGACT-CTTCGAGG-CTTTTATTTTTCATTG-TAGGAGTCAAACCCAGG  993

seq1  GCCTGC-TGGGTAC  1011
      |||||| |||||||
seq2  GCCTGCTTGGGTAC  1007