BAC Information

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BAC

Clone NameB6Ng01-098D11
Chromosome13 (Build37)
Map Location 25,923,763 - 26,068,600
singlet/doubletdoublet
Overlap genenone
Upstream geneTtrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D11.bB6Ng01-098D11.g
ACCDH908369DH908370
length1,0971,145
definitionDH908369|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D11, 5' end.DH908370|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,923,763 - 25,924,868)(26,067,427 - 26,068,600)
sequence
gaattcatttatatccattctcacacatacacaaaatgggttcctaaatt
tacattgtacatttatcattgtttttattgttgctctctcatattcattc
cagaagaaaattattatgtttgaatctttattttagtttctgttgtatat
gacataatattttacaaatagagataattaaatgcgagaccagttaatga
aagaaacaaatatcacttctgacttcagtgtgtgtggagaatgtgatgag
accttttttcctctgttttgtgaaattccatttcttgatggtatcagtgt
tgagaaaaatctgattatcttacttggacataattatagactgtataaaa
caatagcaaaatctatcatggtgtttgaatagttatggttcctgtgcact
tacgtattgggaggcttgttccatacacagtagcactattaggagacgtg
gccttcttggaggaagcaagtcactgtgggtgtgggctttgaggttgcat
atatcaaactatacccagtgtggctgagagtctttctttgctgcttgtga
actcagatgtaaaactctcagcatctttccttgcaccatgtctgccctca
ttatcctcaccgtgaggataatggactaaacctctgaaactgtaagccag
ccccagtggaatgtttttctgtataagagttgtcacggtcatggtgtctc
ttcacagcaataaaaccctaattaagacacctattaatggatatttataa
aaatatgaaccaacatacttgtaccaaaaagaagttgtagcattcaaaat
tgctcttattaaaaatacagtgaagttttaggtgaatctatcagtctttt
aaacctttgttacttcttacatgggtttgtttttggttttgttttttatt
gtggagacaagttcaaccaatacatttattgatgttaaaaatacatttta
attaaaaataaactatatcacttttccttcactttcatccttccaccctt
ccaacccctctcattccacccttcttcaatgggaagattcttttttcttt
ggtatttttattgttaccacacaccacacacatcactcacccacact
gaattccagtctctaagagtctcctactcatgaatgagatgctaaagttt
ttatctagaaagagtaggaggcaggaaagagaaatcttgaacacaatgaa
taaatgaaaacacataaattaagagaaaaaacaaggagcaatttaaaaaa
gacttgagacctggctagatttactgttttgctatatccatgcattgctc
atgtaatgttaaatatatctatctctttacccatttattatcttgttgtg
gagatatctttcaaaatcctttgtcccagttctttcaaagaatatgatgc
attatcattttttctggcttgacactgtgcaataagaagcactttttttt
ttttaatgtgcaatttcactgtatttattagaccaatttctttgatgaaa
atatattgagaagttgtcaactaaatacttgcaaaccgaatccaggaacg
cactgaaaggaatattcatcccaaccaagtaggcttcatcatacataaat
cagtgaatgtaaaatgcaatacaaacaaacttaaggacagaaaccacaca
ataatctcaagtgaagctgaaaagacttttgacaaagtacaacatgcctc
catgagctatcttgaggggagatggtggatacctcagaatagtaaaggtg
aaaaacaacaaacgtttaggcaacatcacatcaaatggagacaaactgag
actctaaaaccaggaaggagacaaagatgtcctctctcctagctctcatt
tgatggagtgttcagtattagtagtcaggcaagagaaagacataaaaagt
atttaacaaaggaaagggaaaagctaaactatccatatttgtagatggta
ggattcttcccttaaagtacagaactgatctgctagaaaagtcttggacc
tagtaaataccatctgagttatactaatgtgataatttctttttttttct
cctttttttttatttttttccatttttattaggaattaactcatttacat
ttcatgcaataccaaagtccccattatccacccaccccactccctgccac
catcctcttttagccttgtgtccctgtctgggcataaagttgcagtcaat
gacttctttcagggatggccgcaggcatactttgatatatatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25923763_25924868
seq2: B6Ng01-098D11.b_47_1143

seq1  GAATTCATTTATATCCATTCTCACACATACACAAAATGGGTTCCTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATATCCATTCTCACACATACACAAAATGGGTTCCTAAATT  50

seq1  TACATTGTACATTTATCATTGTTTTTATTGTTGCTCTCTCATATTCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTACATTTATCATTGTTTTTATTGTTGCTCTCTCATATTCATTC  100

seq1  CAGAAGAAAATTATTATGTTTGAATCTTTATTTTAGTTTCTGTTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAATTATTATGTTTGAATCTTTATTTTAGTTTCTGTTGTATAT  150

seq1  GACATAATATTTTACAAATAGAGATAATTAAATGCGAGACCAGTTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATATTTTACAAATAGAGATAATTAAATGCGAGACCAGTTAATGA  200

seq1  AAGAAACAAATATCACTTCTGACTTCAGTGTGTGTGGAGAATGTGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAATATCACTTCTGACTTCAGTGTGTGTGGAGAATGTGATGAG  250

seq1  ACCTTTTTTCCTCTGTTTTGTGAAATTCCATTTCTTGATGGTATCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTCCTCTGTTTTGTGAAATTCCATTTCTTGATGGTATCAGTGT  300

seq1  TGAGAAAAATCTGATTATCTTACTTGGACATAATTATAGACTGTATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATCTGATTATCTTACTTGGACATAATTATAGACTGTATAAAA  350

seq1  CAATAGCAAAATCTATCATGGTGTTTGAATAGTTATGGTTCCTGTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAAAATCTATCATGGTGTTTGAATAGTTATGGTTCCTGTGCACT  400

seq1  TACGTATTGGGAGGCTTGTTCCATACACAGTAGCACTATTAGGAGACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTGGGAGGCTTGTTCCATACACAGTAGCACTATTAGGAGACGTG  450

seq1  GCCTTCTTGGAGGAAGCAAGTCACTGTGGGTGTGGGCTTTGAGGTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTGGAGGAAGCAAGTCACTGTGGGTGTGGGCTTTGAGGTTGCAT  500

seq1  ATATCAAACTATACCCAGTGTGGCTGAGAGTCTTTCTTTGCTGCTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTATACCCAGTGTGGCTGAGAGTCTTTCTTTGCTGCTTGTGA  550

seq1  ACTCAGATGTAAAACTCTCAGCATCTTTCCTTGCACCATGTCTGCCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATGTAAAACTCTCAGCATCTTTCCTTGCACCATGTCTGCCCTCA  600

seq1  TTATCCTCACCGTGAGGATAATGGACTAAACCTCTGAAACTGTAAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCACCGTGAGGATAATGGACTAAACCTCTGAAACTGTAAGCCAG  650

seq1  CCCCAGTGGAATGTTTTTCTGTATAAGAGTTGTCACGGTCATGGTGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGGAATGTTTTTCTGTATAAGAGTTGTCACGGTCATGGTGTCTC  700

seq1  TTCACAGCAATAAAACCCTAATTAAGACACCTATTAATGGATATTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCAATAAAACCCTAATTAAGACACCTATTAATGGATATTTATAA  750

seq1  AAATATGAACCAACATACTTGTACCAAAAAGAAGTTGTAGCATTCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAACCAACATACTTGTACCAAAAAGAAGTTGTAGCATTCAAAAT  800

seq1  TGCTCTTATTAAAAATACAGTGAAGTTTTAGGTGAATCTATCAGTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTATTAAAAATACAGTGAAGTTTTAGGTGAATCTATCAGTCTTTT  850

seq1  AAACCTTTGTTACTTCTTACATGGGTTTGTTTTTGGTTTTGTTTTTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTGTTACTTCTTACATGGGTTTGTTTTTGGTTTTGTTTTTTATT  900

seq1  GTGGAGACAAGTTCAACCAATACATTTATTGATGTTAAAAATACATTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACAAGTTCAACCAATACATTTATTGATGTTAAAAATACATTTTA  950

seq1  ATTAAAATAAAACTATATCACTTTTTCCTTCACTTTCATCCTTCCACCCT  1000
      |||||||  |||||||||||| ||||||||||||||||||||||||||||
seq2  ATTAAAAATAAACTATATCAC-TTTTCCTTCACTTTCATCCTTCCACCCT  999

seq1  TCCAACCCCTCTCATTCCACCC-TCTCAAATGGAAAGATTCTTTTTTCCT  1049
      |||||||||||||||||||||| |||  ||||| |||||||||||||| |
seq2  TCCAACCCCTCTCATTCCACCCTTCTTCAATGGGAAGATTCTTTTTTCTT  1049

seq1  TTG-ATTTTTATTGTTACACACACACACACACACACACACACACACTCAC  1098
      | | ||||||||||||||       ||||||| ||||||||  |||||||
seq2  TGGTATTTTTATTGTTAC-------CACACAC-CACACACA-TCACTCAC  1090

seq1  CACACACT  1106
      | ||||||
seq2  C-CACACT  1097

seq1: chr13_26067427_26068600
seq2: B6Ng01-098D11.g_68_1212 (reverse)

seq1  TGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGC  50
      |||||||||||||||  || ||||   |||||||| || |||||| ||  
seq2  TGCATATATATCAAAGTAT-GCCT--GCGGCCATCCCT-GAAAGA-AG--  43

seq1  CCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGC  100
       |||| ||| ||| ||||||||    ||||| ||||||  |||| |||  
seq2  TCATT-GAC-TGC-AACTTTAT---GCCCAG-ACAGGG--ACACAAGG--  82

seq1  CAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGG  150
      | ||||| ||   |||   |||| |||||| ||||||||||||||  |||
seq2  CTAAAAGAGG--ATGG--TGGCA-GGGAGT-GGGGTGGGTGGATAATGGG  126

seq1  GACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAA  200
      ||| |||||||| ||||  |||||||||||||||| ||| |||||| |||
seq2  GAC-TTTGGTATTGCAT--GAAATGTAAATGAGTT-AATTCCTAAT-AAA  171

seq1  AATGGAAAAAAATAAAAAAAAAGGAGAAAAAAAAAGAAATTATCACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAAAATAAAAAAAAAGGAGAAAAAAAAAGAAATTATCACATTA  221

seq1  GTATAACTCAGATGGTATTTACTAGGTCCAAGACTTTTCTAGCAGATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACTCAGATGGTATTTACTAGGTCCAAGACTTTTCTAGCAGATCAG  271

seq1  TTCTGTACTTTAAGGGAAGAATCCTACCATCTACAAATATGGATAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTTTAAGGGAAGAATCCTACCATCTACAAATATGGATAGTTTA  321

seq1  GCTTGTTCCTTTCCTTTGTTAAATACTTTTTATGTCTTTCTCTTGCCTGA  400
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCTTTCCTTTGTTAAATACTTTTTATGTCTTTCTCTTGCCTGA  371

seq1  CTACTAATACTGAACACTCCATCAAATGAGAGCTAGGAGAGAGGACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATACTGAACACTCCATCAAATGAGAGCTAGGAGAGAGGACATCT  421

seq1  TTGTCTCCTTCCTGGTTTTAGAGTCTCAGTTTGTCTCCATTTGATGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCTTCCTGGTTTTAGAGTCTCAGTTTGTCTCCATTTGATGTGAT  471

seq1  GTTGCCTAAACGTTTGTTGTTTTTCACCTTTACTATTCTGAGGTATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTAAACGTTTGTTGTTTTTCACCTTTACTATTCTGAGGTATCCAC  521

seq1  CATCTCCCCTCAAGATAGCTCATGGAGGCATGTTGTACTTTGTCAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCCTCAAGATAGCTCATGGAGGCATGTTGTACTTTGTCAAAAGT  571

seq1  CTTTTCAGCTTCACTTGAGATTATTGTGTGGTTTCTGTCCTTAAGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGCTTCACTTGAGATTATTGTGTGGTTTCTGTCCTTAAGTTTGT  621

seq1  TTGTATTGCATTTTACATTCACTGATTTATGTATGATGAAGCCTACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGCATTTTACATTCACTGATTTATGTATGATGAAGCCTACTTGG  671

seq1  TTGGGATGAATATTCCTTTCAGTGCGTTCCTGGATTCGGTTTGCAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGAATATTCCTTTCAGTGCGTTCCTGGATTCGGTTTGCAAGTAT  721

seq1  TTAGTTGACAACTTCTCAATATATTTTCATCAAAGAAATTGGTCTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGACAACTTCTCAATATATTTTCATCAAAGAAATTGGTCTAATAA  771

seq1  ATACAGTGAAATTGCACATTAAAAAAAAAAAAGTGCTTCTTATTGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGAAATTGCACATTAAAAAAAAAAAAGTGCTTCTTATTGCACAG  821

seq1  TGTCAAGCCAGAAAAAATGATAATGCATCATATTCTTTGAAAGAACTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCCAGAAAAAATGATAATGCATCATATTCTTTGAAAGAACTGGG  871

seq1  ACAAAGGATTTTGAAAGATATCTCCACAACAAGATAATAAATGGGTAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATTTTGAAAGATATCTCCACAACAAGATAATAAATGGGTAAAG  921

seq1  AGATAGATATATTTAACATTACATGAGCAATGCATGGATATAGCAAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATATATTTAACATTACATGAGCAATGCATGGATATAGCAAAACA  971

seq1  GTAAATCTAGCCAGGTCTCAAGTCTTTTTTAAATTGCTCCTTGTTTTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTAGCCAGGTCTCAAGTCTTTTTTAAATTGCTCCTTGTTTTTTC  1021

seq1  TCTTAATTTATGTGTTTTCATTTATTCATTGTGTTCAAGATTTCTCTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTATGTGTTTTCATTTATTCATTGTGTTCAAGATTTCTCTTTC  1071

seq1  CTGCCTCCTACTCTTTCTAGATAAAAACTTTAGCATCTCATTCATGAGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTACTCTTTCTAGATAAAAACTTTAGCATCTCATTCATGAGTA  1121

seq1  GGAGACTCTTAGAGACTGGAATTC  1174
      ||||||||||||||||||||||||
seq2  GGAGACTCTTAGAGACTGGAATTC  1145