BAC Information

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BAC

Clone NameB6Ng01-099D04
Chromosome5 (Build37)13 (Build37)
Map Location 17,894,139 - 17,894,54728,478,366 - 28,479,540
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D04.bB6Ng01-099D04.g
ACCDH909059DH909060
length1,0471,164
definitionDH909059|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D04, 5' end.DH909060|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,894,139 - 17,894,547)(28,478,366 - 28,479,540)
sequence
gaattctcgactgaggaagaccgaattgctcagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat
tccaccttacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtt
ggattgcaaacttgtacaaccactctggaagtcagtctggaggttcctca
gaaaattggacataatactactggaagatccagcaatacctctcctgggc
atatacccagaagaagttccaactggtaataagaacacatgattcactat
gttcatggaaggcttatttataatagccagaaactggaagaaacccagat
gcccctcaacagaagaatggatacagaaaatatggtacatttacaaaatg
gagtactactcagctattaaaaacaatgaatttatgaaattcttggacaa
atgtgtgtatctggaggatattatccttagtgaagtaatccaatcacaaa
agaagtcattagatatgcactcgctgataagtggatattagcccagaaac
atagaacacccaagatacaatttgcaaaacacaagaaaatcaagaagagg
gaagaccaataggtgtgttatttttcaagtctcctttcaaaaataaataa
ataaatctccgggcagtggtggcgcacgcctttaatcccagcgcttggga
agcagaggcaggcggatttccaagttcgaggccatcctggtctacagagt
tccaggacaaccagggctacacagagaaaccctgtctcaggggaaaaaaa
aatctcctcatgtggtattcaatttcttaccttgcatcgaaggcttcccc
agtgggcttcactgtttcaattaactatgtctttcctaaaactacacata
tgattacatgggagaagtgccttttctgtgtcctagtgaaatactgctgc
ttggcaagtttcagatgctctgatgcttctcttagccccgcttcttt
gaattcagttctgaaacctttggcgtagtgtttgatgaagttcagatatg
cacctttaaatacttatagttaaagacacttgtgttaaatgcattaaagt
cctgttaaaatcgttgtttgtaaagtagttatttaaatgatattcttgaa
tgaagcttacgcttaagactcagtttcccaaatagtcaaagaatctagaa
agaactagcaaaacccaagtaattatatttataaaacataaattcttctt
tcatcagctaatttttgcaaaacttgctaatagcagaacatttttaaaag
aaaatgtgttgccttggagacagagaatcacattctagccatgtattaaa
atttaaacttagaaaatactttagataatttacatttggaatcacctttc
ataaaaatttgaatctaataaaaatcattttaataaagcaaaatgcatca
ttctcatatctattcttgctatgacagcttaaatctcttcatactttctg
taatacaattgtacctggtaattagaattttaactgtaattatcttacca
tacacataagaaattcatctgaaactcctctgtacatttgagaagtatga
aagctccatctcttactcagataatatacttagattcttgacttttgggc
atttctgtgtctttttaagaaaatttacttctggttttctcatttgctcc
ctctttaaatatatcacagccaccatgtcattcctgaagttaaaaccttc
aggaattgaaattataaaaacaaagttaatatatgttaaatgaaagtggg
taaaaataatttatgctttttttaaaaactaagaaacactggtcttgcaa
taacatgaagtttgaggggatattttggttagcctgctttttacattcat
aacattccttcagcttaagtacaactgaggctccattttcttcttggtct
atagagaccattctgttgtcttctttactaatcatatgtctttatggaac
actttttgcttgttaaaatgtttctttttattcttagtgttgctgatagt
agatatctattcctaaatagcctaggaatacgtgagtgacctaaagtgct
gactttcagctcttagttacataattttgcttgatgagtgcaaactgaaa
cattagtctacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17894139_17894547
seq2: B6Ng01-099D04.b_302_711 (reverse)

seq1  CACCCATTGGTCTTCCCTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTGGTCTTCCCTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTA  50

seq1  TCTTGGGTGTTCTATGTTTCTGGGCTAATATCCACTTATCAGTGAGTACA  100
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TCTTGGGTGTTCTATGTTTCTGGGCTAATATCCACTTATCAGCGAGTGCA  100

seq1  TATCTAATGACTTCTTTTGTGATTGGGTTACCTCACTAAGGATGATATCC  150
      |||||||||||||||||||||||||| |||| ||||||||||| ||||||
seq2  TATCTAATGACTTCTTTTGTGATTGGATTACTTCACTAAGGATAATATCC  150

seq1  TCCATATACATCCATTTGCCTAAGAATTTCATAAATCCATTGTTTTTAAT  200
      |||| |||||  |||||| | ||||||||||||||| |||||||||||||
seq2  TCCAGATACACACATTTGTCCAAGAATTTCATAAATTCATTGTTTTTAAT  200

seq1  AGCCGAGTAGTACT-CATTGTGTAAATGTACCACATTTTCTGTATCTATT  249
      ||| |||||||||| |||| ||||||||||||| |||||||||||| |||
seq2  AGCTGAGTAGTACTCCATTTTGTAAATGTACCATATTTTCTGTATCCATT  250

seq1  CTTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAAT  299
      ||||||||||||| ||||||||||  |||||| |||||||||||||||||
seq2  CTTCTGTTGAGGGGCATCTGGGTTTCTTCCAGTTTCTGGCTATTATAAAT  300

seq1  AAGGCTTCTATGATCATAGTGGAGCATGTGTTCTTATTACCAGTTGGAAC  349
      ||| |||| |||| ||||||| | ||||||||||||||||||||||||||
seq2  AAGCCTTCCATGAACATAGTGAATCATGTGTTCTTATTACCAGTTGGAAC  350

seq1  TTCTTCTGGGTATATGCCCAAGAGAGGTATTGCTGGATCTTCCAGTAGTA  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTTCTGGGTATATGCCCAGGAGAGGTATTGCTGGATCTTCCAGTAGTA  400

seq1  TTATGTCCAA  409
      ||||||||||
seq2  TTATGTCCAA  410

seq1: chr13_28478366_28479540
seq2: B6Ng01-099D04.g_67_1230

seq1  GAATTCAGTTCTGAAACCTTTGGCGTAGTGTTTGATGAAGTTCAGATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTGAAACCTTTGGCGTAGTGTTTGATGAAGTTCAGATATG  50

seq1  CACCTTTAAATACTTATAGTTAAAGACACTTGTGTTAAATGCATTAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAAATACTTATAGTTAAAGACACTTGTGTTAAATGCATTAAAGT  100

seq1  CCTGTTAAAATCGTTGTTTGTAAAGTAGTTATTTAAATGATATTCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAAAATCGTTGTTTGTAAAGTAGTTATTTAAATGATATTCTTGAA  150

seq1  TGAAGCTTACGCTTAAGACTCAGTTTCCCAAATAGTCAAAGAATCTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTACGCTTAAGACTCAGTTTCCCAAATAGTCAAAGAATCTAGAA  200

seq1  AGAACTAGCAAAACCCAAGTAATTATATTTATAAAACATAAATTCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGCAAAACCCAAGTAATTATATTTATAAAACATAAATTCTTCTT  250

seq1  TCATCAGCTAATTTTTGCAAAACTTGCTAATAGCAGAACATTTTTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCTAATTTTTGCAAAACTTGCTAATAGCAGAACATTTTTAAAAG  300

seq1  AAAATGTGTTGCCTTGGAGACAGAGAATCACATTCTAGCCATGTATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTTGCCTTGGAGACAGAGAATCACATTCTAGCCATGTATTAAA  350

seq1  ATTTAAACTTAGAAAATACTTTAGATAATTTACATTTGGAATCACCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACTTAGAAAATACTTTAGATAATTTACATTTGGAATCACCTTTC  400

seq1  ATAAAAATTTGAATCTAATAAAAATCATTTTAATAAAGCAAAATGCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTGAATCTAATAAAAATCATTTTAATAAAGCAAAATGCATCA  450

seq1  TTCTCATATCTATTCTTGCTATGACAGCTTAAATCTCTTCATACTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATATCTATTCTTGCTATGACAGCTTAAATCTCTTCATACTTTCTG  500

seq1  TAATACAATTGTACCTGGTAATTAGAATTTTAACTGTAATTATCTTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAATTGTACCTGGTAATTAGAATTTTAACTGTAATTATCTTACCA  550

seq1  TACACATAAGAAATTCATCTGAAACTCCTCTGTACATTTGAGAAGTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAGAAATTCATCTGAAACTCCTCTGTACATTTGAGAAGTATGA  600

seq1  AAGCTCCATCTCTTACTCAGATAATATACTTAGATTCTTGACTTTTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCATCTCTTACTCAGATAATATACTTAGATTCTTGACTTTTGGGC  650

seq1  ATTTCTGTGTCTTTTTAAGAAAATTTACTTCTGGTTTTCTCATTTGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGTCTTTTTAAGAAAATTTACTTCTGGTTTTCTCATTTGCTCC  700

seq1  CTCTTTAAATATATCACAGCCACCATGTCATTCCTGAAGTTAAAACCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAATATATCACAGCCACCATGTCATTCCTGAAGTTAAAACCTTC  750

seq1  AGGAATTGAAATTATAAAAACAAAGTTAATATATGTTAAATGAAAGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGAAATTATAAAAACAAAGTTAATATATGTTAAATGAAAGTGGG  800

seq1  TAAAAATAATTTATGCTTTTTTTAAAAACTAAGAAACACTGGTCTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATTTATGCTTTTTTTAAAAACTAAGAAACACTGGTCTTGCAA  850

seq1  TAACATGAAGTTTGAGGGGATATTTTGGTTAGCCTGCTTTTTACATTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAAGTTTGAGGGGATATTTTGGTTAGCCTGCTTTTTACATTCAT  900

seq1  AACATTCCTTCAGCTTAAGTACAACTGAGGCTCCATTTTC-TCTTGGTCT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACATTCCTTCAGCTTAAGTACAACTGAGGCTCCATTTTCTTCTTGGTCT  950

seq1  ATAGAGACCATTCTG-TGTCTTCTTTACTAAATCATATGTCTTAATGGAA  998
      ||||||||||||||| ||||||||||||| ||||||||||||| ||||||
seq2  ATAGAGACCATTCTGTTGTCTTCTTTACT-AATCATATGTCTTTATGGAA  999

seq1  CACTTTTTGCTTGTTAAAAATGTTTCTTTTTATTCTTAGGTTGTTGCTGA  1048
      ||||||||||||||| |||||||||||||||||||||||  |||||||||
seq2  CACTTTTTGCTTGTT-AAAATGTTTCTTTTTATTCTTAG--TGTTGCTGA  1046

seq1  TAGTTAGATATCTATTCTTAAATAG-CTAGGAATACGTGAGTTGACCTAA  1097
      ||| ||||||||||||| ||||||| ||||||||||||||| ||||||||
seq2  TAG-TAGATATCTATTCCTAAATAGCCTAGGAATACGTGAG-TGACCTAA  1094

seq1  AGTGCTGACTTTCAAGCTCTAAGTTTTAACAATAATTTTGCCTGTATGA-  1146
      ||||||||||||| |||||| ||||   || |||||||||| || |||| 
seq2  AGTGCTGACTTTC-AGCTCTTAGTT---AC-ATAATTTTGCTTG-ATGAG  1138

seq1  TGCAAACTGAAAACAATTATGTCTACATT  1175
      ||||||||||||   |||| |||||||||
seq2  TGCAAACTGAAA--CATTA-GTCTACATT  1164