BAC Information

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BAC

Clone NameB6Ng01-099N02
Chromosome13 (Build37)
Map Location 18,216,445 - 18,217,595
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N02.bB6Ng01-099N02.g
ACCDH909506DH909507
length1,2281,115
definitionDH909506|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N02, 5' end.DH909507|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccttgagtatttgaagcttttgggctaatatacacttatcag
tgagtgcataccgtgtgtgtgtgtgtgttttgctttgttttgttttgttt
ttgtaattgggttacctcacccaggatgatattttctagttccacccatt
tgcctaagaatctcatgaattcattgtttttagtagctgagtagcacgcc
attgtgtaaatgtaccacattttctgtatccattcctctgttgagggaca
actgggttctttccagcttctggctattataaataaagctgctatgaaca
tagtggagcatgtgcccttattacatgttggagcatcttttgggtatatg
cccaggagtggtattagtgagttctcaggtagttcaattttctgaggaac
caccaaacttatttccagagtggttgtaccagcttgcaatcccaccagca
atggaggagtgtttctcttttgtcacaaccttgtcagcatctgctgtcaa
ctgagtttttgatcttagccattctgacaggtataaagttgaatctgagg
gttgttttgatttgtatgtccctgatgtctaaggatgttgagcatttctt
taggtgcttctcagccattcactattcctcagttgagaattctttgttta
cctctgtaccccatttttaatagggttatttggttctctggagtctaact
tcttgagttctttgtatattttggatgttagctctctatcggatgtagga
ttggtaaagatcttttcacaatctgttcgtggccattttgttctacggac
agtgtcctttgccttacagaaactgtgcaattttatgaggtcccatttgt
cgatcttgatcttagagcataagccatttggtgtttctattcaggaaagt
ttcccctgcgccaatgtgttcagattttcccacttttctcttctattagt
ttcagtgtatctgggtttaatgtggaaggtccttgattcacttggaactt
gagctttgtacagaggtaagaatgggtccattttgcatattttttacatg
ctggccgcaattgacagcaacatttgttaaaatgtccttcctccccccga
tggttagttctatcaaatatcagtgaacattgtatgtggtcagtttagtc
ttctatctatcatattctcctggatttcttgtccatataatgcatgacac
acggcatttttaatgtttgggtttttgc
gaattcaccctgccaggcaatcaggcaggcaggcaggaggcccaccctgg
cagcggactcagtgtaagactgttctttctcaattctccccccagacaca
ccatcctgagaagccactttttcctaccacaggaagcccaagagaacact
atagctagcagtctgacagccaaactgaaccctggccttttgtatcctgc
caggtttgaaaagctggacatcacccctaaaagtgcccagaagatcaagc
cggtgcttgagcggtggatggctgaggctgaggcccgccatcgagcaggt
atgcagaatctcacggaatttattgggagtgagccatccaaaaagcgcaa
gcggcgcacctccttcacgccccaggcccttgagatcctcaatgcccact
ttgagaagaacacacacccctcagggcaggaaatgaccgagattgctgag
aagctaaactacgaccgggaagtagttagagtttggttctgcaataagag
acaagctctaaagaacacaatcaaacgcttaaagcaacacgagcccacct
cggcggcccccctggagcccttagcagattctccagaagaaaactgttag
acacacccattcatggtcggaaggaagcatcacagaaactgagcactacc
ctgaatctccacaaaaaaagaaaggaaggaaagaagaaagaagaaagaat
ttaaagacttgccccagtcatcatctcccttgtatgtaaaagactaaaaa
acaaaaaactaccaaatgggcagaatggtttatacgtgtccgttggtttt
ccaaaaggaaaaaaaaaaaaagaattttaatttttaaacaagaaaaatgc
cacatgaaaggagtatgtggtaggatcattcgctcccccacctgcctccc
taacgccggtttttttaagcaaaccaaataaccactattcttttctgtat
atgatgaaaatgggaacacctttttagggaaaggaaaaaaaactaaaccc
aaaaaattattattataataagacaaaccaaccaacacacacatcaaaac
cgcaccaactgtatctgtcagcgaatgcagtctgccactggaggagcctg
catccttcaggacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18216445_18217595
seq2: B6Ng01-099N02.g_68_1182 (reverse)

seq1  TAGTCCCTGAAGGGATGCAGTGCTCCTCCAGGTGGCAGACTTGCATTCGC  50
      |||| |||||| |||||||| ||||||||| ||||||||| |||||||||
seq2  TAGT-CCTGAA-GGATGCAG-GCTCCTCCA-GTGGCAGAC-TGCATTCGC  45

seq1  TTTGAACAGATACGAGTTTGTGTTGGCGGGTTTTTTTGTTTGTTTGTTTG  100
      |    |||||||| |||| |||      ||||||  ||| |||    |||
seq2  T---GACAGATAC-AGTTGGTG-----CGGTTTTGATGTGTGT---GTTG  83

seq1  TTTGTTTTGTTTTGTTTTTGTTCTTTTATTTATTTATTTATTATTTTTTT  150
       ||| ||||| || |                 | || | || ||||||| 
seq2  GTTGGTTTGTCTTAT-----------------TATAATAATAATTTTTTG  116

seq1  GGTTTAGTTTTTTTTTCTTTTTCCTTAAAAGGTGTTCACATTTTCATCAT  200
      ||||||| ||||||||| ||| ||| ||||||||||| ||||||||||||
seq2  GGTTTAG-TTTTTTTTCCTTTCCCTAAAAAGGTGTTCCCATTTTCATCAT  165

seq1  ATACAGAAAAGAATAAGTGGTTATTTGGTTTGCTTTAAAAAAACCGGCGT  250
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  ATACAGAAAAGAAT-AGTGGTTATTTGGTTTGC-TTAAAAAAACCGGCGT  213

seq1  TAGGGAGGCAGGTGGGGGAGCGAATGATCCTACCACATACTCC-TTCATG  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGGGAGGCAGGTGGGGGAGCGAATGATCCTACCACATACTCCTTTCATG  263

seq1  TGGCATTTTTCTTGTTTAAAAATTTAAAATTC-TTTTTTTTTTTTCCTTT  348
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  TGGCATTTTTCTTGTTTAAAAA-TTAAAATTCTTTTTTTTTTTTTCCTTT  312

seq1  TGGAAAACCAACGGACACGTATAAACCATTCTGCCCATTTGGTAGTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACCAACGGACACGTATAAACCATTCTGCCCATTTGGTAGTTTTT  362

seq1  TGTTTTTTAGTCTTTTACATACAAGGGAGATGATGACTGGGGCAAGTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTAGTCTTTTACATACAAGGGAGATGATGACTGGGGCAAGTCTT  412

seq1  TAAATTCTTTCTTCTTTCTTCTTTCCTTCCTTTCTTTTTTTGTGGAGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTTCTTCTTTCTTCTTTCCTTCCTTTCTTTTTTTGTGGAGATT  462

seq1  CAGGGTAGTGCTCAGTTTCTGTGATGCTTCCTTCCGACCATGAATGGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGTGCTCAGTTTCTGTGATGCTTCCTTCCGACCATGAATGGGTG  512

seq1  TGTCTAACAGTTTTCTTCTGGAGAATCTGCTAAGGGCTCCAGGGGGGCCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACAGTTTTCTTCTGGAGAATCTGCTAAGGGCTCCAGGGGGGCCG  562

seq1  CCGAGGTGGGCTCGTGTTGCTTTAAGCGTTTGATTGTGTTCTTTAGAGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGTGGGCTCGTGTTGCTTTAAGCGTTTGATTGTGTTCTTTAGAGCT  612

seq1  TGTCTCTTATTGCAGAACCAAACTCTAACTACTTCCCGGTCGTAGTTTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTATTGCAGAACCAAACTCTAACTACTTCCCGGTCGTAGTTTAG  662

seq1  CTTCTCAGCAATCTCGGTCATTTCCTGCCCTGAGGGGTGTGTGTTCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCAATCTCGGTCATTTCCTGCCCTGAGGGGTGTGTGTTCTTCT  712

seq1  CAAAGTGGGCATTGAGGATCTCAAGGGCCTGGGGCGTGAAGGAGGTGCGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGGCATTGAGGATCTCAAGGGCCTGGGGCGTGAAGGAGGTGCGC  762

seq1  CGCTTGCGCTTTTTGGATGGCTCACTCCCAATAAATTCCGTGAGATTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGCGCTTTTTGGATGGCTCACTCCCAATAAATTCCGTGAGATTCTG  812

seq1  CATACCTGCTCGATGGCGGGCCTCAGCCTCAGCCATCCACCGCTCAAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGCTCGATGGCGGGCCTCAGCCTCAGCCATCCACCGCTCAAGCA  862

seq1  CCGGCTTGATCTTCTGGGCACTTTTAGGGGTGATGTCCAGCTTTTCAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTGATCTTCTGGGCACTTTTAGGGGTGATGTCCAGCTTTTCAAAC  912

seq1  CTGGCAGGATACAAAAGGCCAGGGTTCAGTTTGGCTGTCAGACTGCTAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGATACAAAAGGCCAGGGTTCAGTTTGGCTGTCAGACTGCTAGC  962

seq1  TATAGTGTTCTCTTGGGCTTCCTGTGGTAGGAAAAAGTGGCTTCTCAGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTTCTCTTGGGCTTCCTGTGGTAGGAAAAAGTGGCTTCTCAGGA  1012

seq1  TGGTGTGTCTGGGGGGAGAATTGAGAAAGAACAGTCTTACACTGAGTCCG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCTGGGGGGAGAATTGAGAAAGAACAGTCTTACACTGAGTCCG  1062

seq1  CTGCCAGGGTGGGCCTCCTGCCTGCCTGCCTGATTGCCTGGCAGGGTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGGTGGGCCTCCTGCCTGCCTGCCTGATTGCCTGGCAGGGTGAA  1112

seq1  TTC  1151
      |||
seq2  TTC  1115