BAC Information

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BAC

Clone NameB6Ng01-100E15
Chromosome13 (Build37)
Map Location 100,150,537 - 100,331,563
singlet/doubletdoublet
Overlap geneMrps27, Mtap1b
Upstream geneLOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100E15.bB6Ng01-100E15.g
ACCDH909830DH909831
length1,037138
definitionDH909830|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E15, 5' end.DH909831|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,150,537 - 100,151,583)(100,331,426 - 100,331,563)
sequence
gaattctgatggaatatatatcacagaaaactcacagctttaaagtacat
cccaactttgtgcaataactacctgaacctaaaatatttccatcactcca
aaggaaacattttatcactcctttgcccgtgaagcagctagtcctagtca
cgtctcagccatttggtggacaccatgtgaagccgttgtttttcaccacc
tctccccagcccctggcagccttggctctaccttctgtttctgtgaattt
atttattcttttcttatctgttattacatatgttgtatacattaatatgc
tgttttgtttttgttgttgatctataaaaataatttttatattctgcata
ctagacccttaccaaatacataatttgcagatgtttccaattaagattta
ctgtgtaggtttttccccattttataatgataatgtcttttaatatataa
aagttttaaatttgcttaaattctaattaatctgtttttctctcattatc
atatctaagactccattgctaagcacatgctgagaagacttcccctgtct
ttcctctgaaggcttgtgatgaggtcactgacacctttggaattgttggt
agtactgtgcgtattactagatgttgagtcctcgaactgagaagtccccc
acctcagtaatatgctctgttaaaatttactttgtaaatgtaagaggaag
ccgtaggagacagtcaggtagatgcttcctagaggagtctgcctttcagc
acatggaagggttcatccaaacacagggctgactatagctcagagtcctc
aggcttttcaagagcaggaagtagttgatggttactcctaagccagcagt
tgtacttccatcttagaaccctgctctgcactgtattcagtactcagtac
tcatacagccaccagaactagcagtggcctaaggtcagttgctctactgt
ctcagctgcagaaacagtggattagtgggcagctgacggacagcaaggaa
gtgatggatgagggatcagttcttgttctccttacgg
aagactctcaaagccccacagtggggtccaactcttcagaggcggactga
agagttccagcaaacgagctaaccaggtttgctgtaagatgcgcctttag
gagctgggcgtttgcagccaccgggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100150537_100151583
seq2: B6Ng01-100E15.b_41_1077

seq1  GAATTCTGATGGAATATATATCACAGAAAACTCACAGCTTTAAAGTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGGAATATATATCACAGAAAACTCACAGCTTTAAAGTACAT  50

seq1  CCCAACTTTGTGCAATAACTACCTGAACCTAAAATATTTCCATCACTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTTGTGCAATAACTACCTGAACCTAAAATATTTCCATCACTCCA  100

seq1  AAGGAAACATTTTATCACTCCTTTGCCCGTGAAGCAGCTAGTCCTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACATTTTATCACTCCTTTGCCCGTGAAGCAGCTAGTCCTAGTCA  150

seq1  CGTCTCAGCCATTTGGTGGACACCATGTGAAGCCGTTGTTTTTCACCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCAGCCATTTGGTGGACACCATGTGAAGCCGTTGTTTTTCACCACC  200

seq1  TCTCCCCAGCCCCTGGCAGCCTTGGCTCTACCTTCTGTTTCTGTGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGCCCCTGGCAGCCTTGGCTCTACCTTCTGTTTCTGTGAATTT  250

seq1  ATTTATTCTTTTCTTATCTGTTATTACATATGTTGTATACATTAATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTTTTCTTATCTGTTATTACATATGTTGTATACATTAATATGC  300

seq1  TGTTTTGTTTTTGTTGTTGATCTATAAAAATAATTTTTATATTCTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTGTTGTTGATCTATAAAAATAATTTTTATATTCTGCATA  350

seq1  CTAGACCCTTACCAAATACATAATTTGCAGATGTTTCCAATTAAGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCCTTACCAAATACATAATTTGCAGATGTTTCCAATTAAGATTTA  400

seq1  CTGTGTAGGTTTTTCCCCATTTTATAATGATAATGTCTTTTAATATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGGTTTTTCCCCATTTTATAATGATAATGTCTTTTAATATATAA  450

seq1  AAGTTTTAAATTTGCTTAAATTCTAATTAATCTGTTTTTCTCTCATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAATTTGCTTAAATTCTAATTAATCTGTTTTTCTCTCATTATC  500

seq1  ATATCTAAGACTCCATTGCTAAGCACATGCTGAGAAGACTTCCCCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAGACTCCATTGCTAAGCACATGCTGAGAAGACTTCCCCTGTCT  550

seq1  TTCCTCTGAAGGCTTGTGATGAGGTCACTGACACCTTTGGAATTGTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGAAGGCTTGTGATGAGGTCACTGACACCTTTGGAATTGTTGGT  600

seq1  AGTACTGTGCGTATTACTAGATGTTGAGTCCTCGAACTGAGAAGTCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTGCGTATTACTAGATGTTGAGTCCTCGAACTGAGAAGTCCCCC  650

seq1  ACCTCAGTAATATGCTCTGTTAAAATTTACTTTGTAAATGTAAGAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTAATATGCTCTGTTAAAATTTACTTTGTAAATGTAAGAGGAAG  700

seq1  CCGTAGGAGACAGTCAGGTAGATGCTTCCTAGAGGAGTCTGCCTTTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGGAGACAGTCAGGTAGATGCTTCCTAGAGGAGTCTGCCTTTCAGC  750

seq1  ACATGGAAGGGTTCATCCAAACACAGGGCTGACTATAGCTCAGAGTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAGGGTTCATCCAAACACAGGGCTGACTATAGCTCAGAGTCCTC  800

seq1  AGGC-TTTCAAGAGCAGGAAGTAGTTGATGGTTACTCCTAAGCCAGCAGT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTCAAGAGCAGGAAGTAGTTGATGGTTACTCCTAAGCCAGCAGT  850

seq1  TGTACTTCCATCTTAGAACCCTGCTCTGCACTGTATTCAGTACTCAGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCCATCTTAGAACCCTGCTCTGCACTGTATTCAGTACTCAGTAC  900

seq1  TCAGTACAGCCACCAGAACTAGCAGTGGCCTAAGGTACAGTTTGCTCTAC  949
      ||| |||||||||||||||||||||||||||||||| ||| |||||||||
seq2  TCA-TACAGCCACCAGAACTAGCAGTGGCCTAAGGT-CAG-TTGCTCTAC  947

seq1  TTGTCTTCAGGCTGCAGCAGACAGTGGATTAGTGGGCAGCTGACGGGACA  999
       |||| ||| ||||||| | |||||||||||||||||||||||| |||||
seq2  -TGTC-TCA-GCTGCAG-AAACAGTGGATTAGTGGGCAGCTGAC-GGACA  992

seq1  GCAAGGAAGTGATGGATGAGGGTATCCAGTTCTTGTTCGCCTTCACGG  1047
      |||||||||||||||||||||| || |||||||||||| |||| ||||
seq2  GCAAGGAAGTGATGGATGAGGG-AT-CAGTTCTTGTTCTCCTT-ACGG  1037

seq1: chr13_100331426_100331563
seq2: B6Ng01-100E15.g_73_210 (reverse)

seq1  CCCCCCCCCCCCCCCCGGTGGCTGCAAACGCCCAGCTCCTAAAGGCGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCGGTGGCTGCAAACGCCCAGCTCCTAAAGGCGCAT  50

seq1  CTTACAGCAAACCTGGTTAGCTCGTTTGCTGGAACTCTTCAGTCCGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCAAACCTGGTTAGCTCGTTTGCTGGAACTCTTCAGTCCGCCTC  100

seq1  TGAAGAGTTGGACCCCACTGTGGGGCTTTGAGAGTCTT  138
      ||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTTGGACCCCACTGTGGGGCTTTGAGAGTCTT  138