BAC Information

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BAC

Clone NameB6Ng01-100E22
Chromosome13 (Build37)
Map Location 107,160,978 - 107,262,435
singlet/doubletdoublet
Overlap geneLOC631097
Upstream geneHtr1a, EG668025, Olfr717-ps1
Downstream geneEG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100E22.bB6Ng01-100E22.g
ACCDH909842DH909843
length1,1591,147
definitionDH909842|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E22, 5' end.DH909843|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,160,978 - 107,162,152)(107,261,301 - 107,262,435)
sequence
gaattcaagacccttctgatatatagcagtgtgtaagagtcacctccaat
cacatcccatagatgtcaaaatgtctttccgcacaagaataatacccaac
agtatgacatctggctgctagtgtaagactgtcctctgtggcctcccagt
gtgaagcatgcaagtgtctgctcctaccttcgatctcatgttcattcctt
ctctacttactgcaccaaggtaacaagcaagcaccatgcacatcagcatt
actttttacattttctttttatttctacatgccctctggtagaatatcct
tcatcccgaaaatctttacttcatttcagatacctgctcatgggttttaa
tgtcccaaaagaatggtagcagcagtaactgcagcaatgacagaagcagg
ctagataaacattgtagcaagtcacaaagaggtttgatgatggcattggt
attacatgaacacaagcaaacaaaataaaataataattgatgataataat
taattaataataataataataataaatgttccttcagacctcctaaaacc
taaggcatactggaaggtgtcaccatattctgacgagtgttcccatttca
gataatttaattaagaaaatccctcacaggagaggtgagtccaaagggtt
gtctcttcagcaatttctacccaatcaagttgacaaacaagattaatcat
tgcagccccctagggaaatatgtggatggacagtattcaatgaaagataa
aggagatctatactgtcatggggagcaatgtccaagctgacacaaaatgc
caagtgaattttttccagggggttgatgaaaagtttcccacttagataga
aactcagatgtaagtaggtgtcagatggcaggatgagggaggagagagag
tcagggaagaactgtgaaaaagtgaaatggcaaatggattctataagaag
agtttggtaaagtgactagagaggtaaaataagctaagcagctcagaatc
tcagtgaacagctgcagtgtcagagcagtggtctaagcccttgggcaata
ccactatgggagagtaacaagtgtgatgttgcttgttccatcatttgtaa
tgaggtgtaaatgcctgtagctcatactatgctctctagaacttaaccag
ccgaactat
gaattctgtaaaagccatactccactgttggcatactactttctcttact
ttcttgaatattagggtctcatttctcatgtagtcatcacacacatgctt
ttttcttttgcttcataagaataccctccttatgccaattctttgagaca
gttaatacacagtctttcaagattcaacctagtgattaggttctcaaaat
gtcaaaattagaaatcttcctaaatcccattgattatgttaacatttctg
taacattcataagttattcaatgttgaagtttacttttgttgagcatata
ttatatgggtagaaagaccctttttcctttgcttaccccaatgtatctat
gcaaagcttacttggtgcctagaatgtggtagtactcaattcttgtattt
attctgtattgtcgtccaaagattataatataattattttttcctcttct
catacacagacatacagattcacacacagagagacaattctttctctttc
tttctctcatacactgacacagaaacacatgcagaaacacacacacacac
acacacacacacacagagagagagagagagagagagagagagagagagag
agagagagagagagagagagaggtactgtagtctaggatgaaattctttt
tctcttaccacagattgacttatacttctttcttaatacagattttgcaa
gagggctaagaataagttgatgcatctggaaatcctctcaaacacctgca
gatttttctttctgttggcaaggctacctcatgtttatattacattcatc
cttgactaaatatttttctccatttggaaacacatggaatcgttcagtgg
caagtcaattggtctagatagggtggtcgcatgttttctgcccttggggg
cagtatttattaatgcctcccatcctcccctctgtaaaatgccagcactt
atgtcatagccctgcagaagtgtaaaccttcagtgagggggtttgctgac
tctctggtagccgaaacgtcattttcaatttctctgctacatttttatga
agaaatatcttgtagaagtgactttttcatgcccagaggtgagaaggcaa
ggtggagggtttgagtggtggaattcaccttattagtagcaatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_107160978_107162152
seq2: B6Ng01-100E22.b_50_1208

seq1  GAATTCAAGACCCTTCTGATATATAGCAGTGTGTAAGAGTCACCTCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCCTTCTGATATATAGCAGTGTGTAAGAGTCACCTCCAAT  50

seq1  CACATCCCATAGATGTCAAAATGTCTTTCCGCACAAGAATAATACCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCATAGATGTCAAAATGTCTTTCCGCACAAGAATAATACCCAAC  100

seq1  AGTATGACATCTGGCTGCTAGTGTAAGACTGTCCTCTGTGGCCTCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACATCTGGCTGCTAGTGTAAGACTGTCCTCTGTGGCCTCCCAGT  150

seq1  GTGAAGCATGCAAGTGTCTGCTCCTACCTTCGATCTCATGTTCATTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCATGCAAGTGTCTGCTCCTACCTTCGATCTCATGTTCATTCCTT  200

seq1  CTCTACTTACTGCACCAAGGTAACAAGCAAGCACCATGCACATCAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTACTGCACCAAGGTAACAAGCAAGCACCATGCACATCAGCATT  250

seq1  ACTTTTTACATTTTCTTTTTATTTCTACATGCCCTCTGGTAGAATATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACATTTTCTTTTTATTTCTACATGCCCTCTGGTAGAATATCCT  300

seq1  TCATCCCGAAAATCTTTACTTCATTTCAGATACCTGCTCATGGGTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCGAAAATCTTTACTTCATTTCAGATACCTGCTCATGGGTTTTAA  350

seq1  TGTCCCAAAAGAATGGTAGCAGCAGTAACTGCAGCAATGACAGAAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAAAGAATGGTAGCAGCAGTAACTGCAGCAATGACAGAAGCAGG  400

seq1  CTAGATAAACATTGTAGCAAGTCACAAAGAGGTTTGATGATGGCATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAACATTGTAGCAAGTCACAAAGAGGTTTGATGATGGCATTGGT  450

seq1  ATTACATGAACACAAGCAAACAAAATAAAATAATAATTGATGATAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGAACACAAGCAAACAAAATAAAATAATAATTGATGATAATAAT  500

seq1  TAATTAATAATAATAATAATAATAAATGTTCCTTCAGACCTCCTAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATAATAATAATAATAATAAATGTTCCTTCAGACCTCCTAAAACC  550

seq1  TAAGGCATACTGGAAGGTGTCACCATATTCTGACGAGTGTTCCCATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATACTGGAAGGTGTCACCATATTCTGACGAGTGTTCCCATTTCA  600

seq1  GATAATTTAATTAAGAAAATCCCTCACAGGAGAGGTGAGTCCAAAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAATTAAGAAAATCCCTCACAGGAGAGGTGAGTCCAAAGGGTT  650

seq1  GTCTCTTCAGCAATTTCTACCCAATCAAGTTGACAAACAAGATTAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCAGCAATTTCTACCCAATCAAGTTGACAAACAAGATTAATCAT  700

seq1  TGCAGCCCCCTAGGGAAATATGTGGATGGACAGTATTCAATGAAAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCCCTAGGGAAATATGTGGATGGACAGTATTCAATGAAAGATAA  750

seq1  AGGAGATCTATACTGTCATGGGGAGCAATGTCCAAGCTGACACAAAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCTATACTGTCATGGGGAGCAATGTCCAAGCTGACACAAAATGC  800

seq1  CAAGTGAATTTTTTCCAGGGGGTTGATGAAAAGTTTCCCACTTAGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATTTTTTCCAGGGGGTTGATGAAAAGTTTCCCACTTAGATAGA  850

seq1  AACTCAAGATGTAAGTAGGTGTCAGATGGCAGGATGAGGGAGGAGAGAGA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTC-AGATGTAAGTAGGTGTCAGATGGCAGGATGAGGGAGGAGAGAGA  899

seq1  GTCAGGGAAGAACTGTGAAAAAGTGAAATGGCAAATGGATTCTATAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAAGAACTGTGAAAAAGTGAAATGGCAAATGGATTCTATAAGAA  949

seq1  GAGTTTGGTAAAGTGACTAGAGAGGTAAAATAAGCTAAGCAGCCCAG-AT  999
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  GAGTTTGGTAAAGTGACTAGAGAGGTAAAATAAGCTAAGCAGCTCAGAAT  999

seq1  CTCAGTGAACCAGCTGCAGTGTCATGAAGCAGTTGGTCTAAGCCCTTTGG  1049
      ||||||||| ||||||||||||||   ||||| |||||||||||| ||||
seq2  CTCAGTGAA-CAGCTGCAGTGTCA--GAGCAG-TGGTCTAAGCCC-TTGG  1044

seq1  GCAATACCACTATGGAAGATGTAAC-AGTGTGATGGTTGCTTTGGTTTCT  1098
      ||||||||||||||| ||| ||||| |||||||| |||||||    ||| 
seq2  GCAATACCACTATGGGAGA-GTAACAAGTGTGAT-GTTGCTT---GTTCC  1089

seq1  ATCATTTGTATTTGAGGTGTAAAATGGCTGTATAGCTTCATACTATGCTC  1148
      ||||||||||  |||||||| ||||| |||  |||| |||||||||||||
seq2  ATCATTTGTA-ATGAGGTGT-AAATGCCTG--TAGC-TCATACTATGCTC  1134

seq1  TCCTAGAACTCTAACAAGCCAAACTAT  1175
      | |||||||| |||| |||| ||||||
seq2  T-CTAGAACT-TAACCAGCCGAACTAT  1159

seq1: chr13_107261301_107262435
seq2: B6Ng01-100E22.g_69_1215 (reverse)

seq1  AAATATTTGCTACTAATAAGTTGCATTCCACCACTCAAGCACTCCA-CTT  49
      ||||| |||||||||||||| || |||||||||||||| | ||||| |||
seq2  AAATA-TTGCTACTAATAAGGTGAATTCCACCACTCAAACCCTCCACCTT  49

seq1  GCCTTCTCACCTCTGTGC-TG-AAAAGTCACTTCTAC-AGATA-TTCTTC  95
      ||||||||||||||| || || ||||||||||||||| ||||| ||||||
seq2  GCCTTCTCACCTCTGGGCATGAAAAAGTCACTTCTACAAGATATTTCTTC  99

seq1  AT-AAAATGTAGCAG-GGAATTG-AAATGACGTTTC-GCTACCAGTGAGT  141
      || |||||||||||| | ||||| |||||||||||| |||||||| ||||
seq2  ATAAAAATGTAGCAGAGAAATTGAAAATGACGTTTCGGCTACCAGAGAGT  149

seq1  CAGCAAACCCCCTCACTGAAGGTTTACAC-TCTGCAGGGCTATGACATAA  190
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGCAAACCCCCTCACTGAAGGTTTACACTTCTGCAGGGCTATGACATAA  199

seq1  GTGCTGGCA-TTTACAGAGGGGAGGATGGGAGGCATTAATAAATACTGCC  239
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCATTTTACAGAGGGGAGGATGGGAGGCATTAATAAATACTGCC  249

seq1  CCCAAGGGCAGGAAACATGCGA-CACCCTATCTAGACCAATTGACTTGCC  288
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  CCCAAGGGCAGAAAACATGCGACCACCCTATCTAGACCAATTGACTTGCC  299

seq1  ACTGAACGATTCCATGTGTTTCCAAATGGAGAAAAATA-TTAGTCAAGGA  337
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTGAACGATTCCATGTGTTTCCAAATGGAGAAAAATATTTAGTCAAGGA  349

seq1  TGAATGTAATATAAACATGAGGTAGCCTTGCCAACAGAAAGAAAAATCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAATATAAACATGAGGTAGCCTTGCCAACAGAAAGAAAAATCTG  399

seq1  CAGGTGTTTGAGAGGATTTCCAGATGCATCAACTTATTCTTAGCCCTCTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTTGAGAGGATTTCCAGATGCATCAACTTATTCTTAGCCCTCTT  449

seq1  GCAAAATCTGTATTAAGAAAGAAGTATAAGTCAATCTGTGGTAAGAGAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTGTATTAAGAAAGAAGTATAAGTCAATCTGTGGTAAGAGAAA  499

seq1  AAGAATTTCATCCTAGACTACAGTACCTCTCTCTCTCTCTCTCTCTCTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTCATCCTAGACTACAGTACCTCTCTCTCTCTCTCTCTCTCTCT  549

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGT  599

seq1  GTGTGTGTGTGTTTCTGCATGTGTTTCTGTGTCAGTGTATGAGAGAAAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTCTGCATGTGTTTCTGTGTCAGTGTATGAGAGAAAGA  649

seq1  AAGAGAAAGAATTGTCTCTCTGTGTGTGAATCTGTATGTCTGTGTATGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGAATTGTCTCTCTGTGTGTGAATCTGTATGTCTGTGTATGAG  699

seq1  AAGAGGAAAAAATAATTATATTATAATCTTTGGACGACAATACAGAATAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAAAATAATTATATTATAATCTTTGGACGACAATACAGAATAA  749

seq1  ATACAAGAATTGAGTACTACCACATTCTAGGCACCAAGTAAGCTTTGCAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAATTGAGTACTACCACATTCTAGGCACCAAGTAAGCTTTGCAT  799

seq1  AGATACATTGGGGTAAGCAAAGGAAAAAGGGTCTTTCTACCCATATAATA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATTGGGGTAAGCAAAGGAAAAAGGGTCTTTCTACCCATATAATA  849

seq1  TATGCTCAACAAAAGTAAACTTCAACATTGAATAACTTATGAATGTTACA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCAACAAAAGTAAACTTCAACATTGAATAACTTATGAATGTTACA  899

seq1  GAAATGTTAACATAATCAATGGGATTTAGGAAGATTTCTAATTTTGACAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTAACATAATCAATGGGATTTAGGAAGATTTCTAATTTTGACAT  949

seq1  TTTGAGAACCTAATCACTAGGTTGAATCTTGAAAGACTGTGTATTAACTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAACCTAATCACTAGGTTGAATCTTGAAAGACTGTGTATTAACTG  999

seq1  TCTCAAAGAATTGGCATAAGGAGGGTATTCTTATGAAGCAAAAGAAAAAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGAATTGGCATAAGGAGGGTATTCTTATGAAGCAAAAGAAAAAA  1049

seq1  GCATGTGTGTGATGACTACATGAGAAATGAGACCCTAATATTCAAGAAAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTGTGATGACTACATGAGAAATGAGACCCTAATATTCAAGAAAG  1099

seq1  TAAGAGAAAGTAGTATGCCAACAGTGGAGTATGGCTTTTACAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAGTAGTATGCCAACAGTGGAGTATGGCTTTTACAGAATTC  1147