BAC Information

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BAC

Clone NameB6Ng01-100H13
Chromosome13 (Build37)
Map Location 116,206,312 - 116,207,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H13.bB6Ng01-100H13.g
ACCDH909962DH909963
length6971,259
definitionDH909962|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H13, 5' end.DH909963|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggtttggggcagattgattgagattgagcagccatggagaa
actctaaagatgatattagtagacatttgaatatgttaatgaatctggag
gtttgaaacataagtgacaattatagaacgttctcaacggatagcacgac
tggatctgtccagagaagggggtgcagggtgggacaagaagcttgaaggg
gcatagaaaatctctaggagaggcagaaggaatctaaaaaagatgtcatc
ctagcaaccaactaagaaatttctttaagaaatgttaactgacaattgtt
ctgaagagatagtaggaaaagtaacataactgtgaagcagaggtgagctg
gaccctaggagggaaagttacaccccaggatgatttcaggtgtttgctgt
aagtggtaaatccaaacatccactgtgagctcagtaaatgtcctgaatga
tcatatgttgtcatgcgcttcttttttttttttttttttggcatgcatat
ttgtttcatttactagtaggaaaacacttttgagttgctactatgtcatt
tttgttgaaactgacacacaggagaggttagctaaaaccatggtgccatg
ttgtgatggtttgaaggagaaatgtgttccatggactaaggcttttgacc
agtggtggctctgtttggagaggttgggggccgtgggggggtggggc
gaattcaagaacacatcaaaacgatcattcaccatgatcaagtaggcttc
atcccagggatgcagggatggttcaatatgtggaaatccgtcaatgtaat
ccactacataaacaaactcaaaggaaaaaacaatgatcatttcattagat
gctgaaaaagcatttcacaaaattcagggtcccttcatgttaaaagcctt
agaaagattaggaattcaaggaccccacctaaacataataaaagtgatat
acatcaaaccagtagccaacatcaaaataaatgtagagaaacttgaacca
atcccactaaaatcagggactagaaaaggctgcccaccctctccctacat
attcagtagagtacttgaagttctagctagagcaatcagacaataatagg
aggtcaaatggatacaaattggagaggaagaaatcaaaatatcactattt
gcaaaggatatgatcatatacttaagtgaccccccaaaagtccaccagag
atctcctaaagctgataaataactttagcaaagtggctggatataaaatt
aactcaaacaaatcagtggccttctacttaaaagataaacaggctgaaaa
agaaatgagagaaacaatactcttcacaatagtcacaaataatataaaat
accttggtgtactctgactaagcaagtgaaagatctgtatgacaagaact
tcaagtctctgaagaaagaaattgaagatctcagaagatggaaagatatc
acatgttcatacattggcaggattaatatagtcaaaatggctaacttgcc
aaaagcaatctacatattcaaataatccacatcaaaatttcaaatcaatt
cttcatagagttagaaagagcaatttagaaattcatttggaacaacaaaa
aacctagaatagaaaaaaactattctcaacaataaaagacttctggtggg
aatcaccattcctaaactgaagctgtactacagagcatagtgattaaaac
aacaacaaaaacaaaacaaaacaaacaaaacaaaaacccaacagcacaca
acaagccctgcatgttatggtacagagaccaggcaggagaatcaatggat
aggattgacaccaagaatggaacctcccacaatggttacttgatcttgac
aaggacttaaacgatccaatggagagtgaccgcaatttaacaaatgagtc
tgtcaactgtggtacggaaagtgaaaaatgcaaataccacctctctactc
ctctgtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116206312_116207008
seq2: B6Ng01-100H13.b_44_740

seq1  GAATTCTCTGGTTTGGGGCAGATTGATTGAGATTGAGCAGCCATGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTTTGGGGCAGATTGATTGAGATTGAGCAGCCATGGAGAA  50

seq1  ACTCTAAAGATGATATTAGTAGACATTTGAATATGTTAATGAATCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAGATGATATTAGTAGACATTTGAATATGTTAATGAATCTGGAG  100

seq1  GTTTGAAACATAAGTGACAATTATAGAACGTTCTCAACGGATAGCACGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAACATAAGTGACAATTATAGAACGTTCTCAACGGATAGCACGAC  150

seq1  TGGATCTGTCCAGAGAAGGGGGTGCAGGGTGGGACAAGAAGCTTGAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGTCCAGAGAAGGGGGTGCAGGGTGGGACAAGAAGCTTGAAGGG  200

seq1  GCATAGAAAATCTCTAGGAGAGGCAGAAGGAATCTAAAAAAGATGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAAATCTCTAGGAGAGGCAGAAGGAATCTAAAAAAGATGTCATC  250

seq1  CTAGCAACCAACTAAGAAATTTCTTTAAGAAATGTTAACTGACAATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACCAACTAAGAAATTTCTTTAAGAAATGTTAACTGACAATTGTT  300

seq1  CTGAAGAGATAGTAGGAAAAGTAACATAACTGTGAAGCAGAGGTGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGATAGTAGGAAAAGTAACATAACTGTGAAGCAGAGGTGAGCTG  350

seq1  GACCCTAGGAGGGAAAGTTACACCCCAGGATGATTTCAGGTGTTTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAGGAGGGAAAGTTACACCCCAGGATGATTTCAGGTGTTTGCTGT  400

seq1  AAGTGGTAAATCCAAACATCCACTGTGAGCTCAGTAAATGTCCTGAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTAAATCCAAACATCCACTGTGAGCTCAGTAAATGTCCTGAATGA  450

seq1  TCATATGTTGTCATGCGCTTCTTTTTTTTTTTTTTTTTTGGCATGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTTGTCATGCGCTTCTTTTTTTTTTTTTTTTTTGGCATGCATAT  500

seq1  TTGTTTCATTTACTAGTAGGAAAACACTTTTGAGTTGCTACTATGTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTTACTAGTAGGAAAACACTTTTGAGTTGCTACTATGTCATT  550

seq1  TTTGTTGAAACTGACACACAGGAGAGGTTAGCTAAAACCATGGTGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAAACTGACACACAGGAGAGGTTAGCTAAAACCATGGTGCCATG  600

seq1  TTGTGATGGTTTGAAGGAGAAATGTGTTCCATGGACTAAGGCTTTTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGGTTTGAAGGAGAAATGTGTTCCATGGACTAAGGCTTTTGACC  650

seq1  AGTGGTGGCTCTGTTTGGAGAGGTTGGGGGCCGTGGGGGGGTGGGGC  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCTCTGTTTGGAGAGGTTGGGGGCCGTGGGGGGGTGGGGC  697