BAC Information

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BAC

Clone NameB6Ng01-100J20
Chromosome13 (Build37)
Map Location 35,427,905 - 35,473,245
singlet/doubletdoublet
Overlap genenone
Upstream gene3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100J20.bB6Ng01-100J20.g
ACCDH910057DH910058
length1,0661,181
definitionDH910057|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J20, 5' end.DH910058|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,472,176 - 35,473,245)(35,427,905 - 35,429,078)
sequence
gaattcaatggcaaggagataaatttaaaagatgatggttgagtagaatc
aggaacaatacagttttactaagaactacaggttttgctgcttccctctc
aatgtgtaaatatactctgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgt
aatgaagatggaaaccagggctttgcacattccagtctagcactccactg
aacaactagctgccaaacttggatatggaaatccctaccatggtatgatg
aactctggagataagatctttgggagagaactatgactagatgaggttat
gaggtgagggctttcatgagaagaaacatggcttcataaagacagaccaa
gaggttctctctctttactagttaggatgaggaggtgagccaggaagaga
acttcaccaggaatccaattggttaacaccatgagttgtgtagctgttcc
ctccattttaaatggaagctctttaagaaaccggatgctagaaagatgaa
acaacagggtgttataaggggtaatgaaacatcccactctgtagggatgc
acatttcgacacaggatgttctgaggggaactgaaacaatccaccttgaa
gagaagctcattaagctcaggaagaaaaacaaaaaacaaaaactctaggg
ctgtagaaagctcctgaaactgaccagattcactatgttcctccttcccc
aagtaaggactgctaagagagagaactcagaacagaaacagctaagcttc
ctgcaaaagctctgaccaattaaactacctggaaaggacacatttcaacc
tatttagctgcctgtggactcgaggtttccagctttttatgagctgtcac
ccatactggtgtgaactttggtgatgcagctgtcttgagtcattttctgt
gcctgaaagtaaccccaataaaacctaacttggcttacagtgtgaacttg
ggctggtgtccctactttgacctgttgtcagttcccaatctggggtggga
gacattgttcctccccctttatcccaggatattgtgctaacaccttggaa
tttccacttgatgaag
gaattcataagtttacttctaaaagctatcaatcatgtcaaagaggatat
taacaagcaggtggacgaagtaaggagatcaattcaagacccagagaaga
aagtcatcaacatataggagatgattggaaatgtggatgtggaagtcagc
accatggatgaagaaactaggaaagaaattgaggtaaaatttttaaaaat
tacaaaaatgctgagaatgaaaaaaaatgagttaaatgaaaatgcaaatg
gaaaagcatcatcaatagataaaaccaagtgggatgtcatcagcagacaa
gcataagaagccactgggtagaagtagcacctgttataaaaactgaagac
aaagaaaatctatttaatgaaaacataaaaaattccctcaatctggggaa
aagaaatatataacccaacacaagaggcatttataatcccaaccacttat
aaacagagaagactctctttgtgacacatcattttaatgctgtagtagaa
aaatgcccactcacaaaagcaaccacatcaaaacaaaacaaggcccctca
gcagaaatattaaaagccagaatgatatatcctaagctctgaaagcaaat
agctcaccaattaatgttgctatctccagaaaaattatcttttaaaatca
accaagagagaaccatttttgagacctgcacaaactaaagcaattcatgg
ccatcaacccagcactgaaaaggagatgtacagaaattttaaagggagac
caaagtctaaatcataagagtacaagaaagactaaatctcatgagaggac
tagactgacaatggagaattaagaatgaatccattatgttcagcacagca
aacacctaacatgaatataggataaagaaaaggaacaaacagtaatctaa
ccaagagtaggagaaatcaacaaatgtctctcaataataactttagaatg
tgcctggggacagtactattgggtaaagtgcttgctaaataagtatgagg
acctggagtttgatgccttagcactcaataaagaaagccattgatgggtg
tcacatgcctcataaatgccttgtgttggtgaaggtaagcaagtaatcct
gggactggtggcttgcagcctcacatatactcttaagctcagttccaggt
gggatttctgttcctaaacaataccaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_35472176_35473245
seq2: B6Ng01-100J20.b_45_1110 (reverse)

seq1  CTTCAACCAAGTTGAAATGTCCAAGGTGTTATGCAACATTATTCCTGGGG  50
      |||| | ||||| ||||| |||||||||||| || ||| || ||||||| 
seq2  CTTC-ATCAAGTGGAAAT-TCCAAGGTGTTA-GC-ACAATA-TCCTGGGA  45

seq1  ATAAGGGGGAGGAACAAATGTCTACACACCCCAGATTGGGAACTGACAAC  100
        ||||||||||||| ||||||| | ||||||||||||||||||||||||
seq2  TAAAGGGGGAGGAAC-AATGTCT-CCCACCCCAGATTGGGAACTGACAAC  93

seq1  AGGTCAAAGTATGGACACCAG-CCAAGTTCAACACTGTAAGCC-AGTTAA  148
      ||||||||||| ||||||||| |||||||| |||||||||||| ||||| 
seq2  AGGTCAAAGTAGGGACACCAGCCCAAGTTC-ACACTGTAAGCCAAGTTAG  142

seq1  GTTTTATTGGGGTTACTTTCAGGCACAG-AAATGACTCAAAGACAGCTGC  197
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  GTTTTATTGGGGTTACTTTCAGGCACAGAAAATGACTC-AAGACAGCTGC  191

seq1  ATCACCAAAGTTCACACCAGTATGGGTGACAGCTCAT-AAAAGCTGGAAA  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCACCAAAGTTCACACCAGTATGGGTGACAGCTCATAAAAAGCTGGAAA  241

seq1  CCTCGAGTCCACAGGCAGCTAAATAGGTTGAAATGTGTCCTTTCCAGGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGTCCACAGGCAGCTAAATAGGTTGAAATGTGTCCTTTCCAGGTA  291

seq1  GTTTAATTGGTCAGAGCTTTTGCAGGAAGCTTAGCTG-TTCTGTTCTGAG  345
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTTAATTGGTCAGAGCTTTTGCAGGAAGCTTAGCTGTTTCTGTTCTGAG  341

seq1  TTCTCTCTCTTAGCAGTCCTTACTTGGGGAAGGAGGAACATAGTGAATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTTAGCAGTCCTTACTTGGGGAAGGAGGAACATAGTGAATCT  391

seq1  GGTCAGTTTCAGGAGCTTTCTACAGCCCTAGAGTTTTTGTTTTTTGTTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTTCAGGAGCTTTCTACAGCCCTAGAGTTTTTGTTTTTTGTTTT  441

seq1  TCTTCCTGAGCTTAATGAGCTTCTCTTCAAGGTGGATTGTTTCAGTTCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAGCTTAATGAGCTTCTCTTCAAGGTGGATTGTTTCAGTTCCC  491

seq1  CTCAGAACATCCTGTGTCGAAATGTGCATCCCTACAGAGTGGGATGTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACATCCTGTGTCGAAATGTGCATCCCTACAGAGTGGGATGTTTC  541

seq1  ATTACCCCTTATAACACCCTGTTGTTTCATCTTTCTAGCATCCGGTTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCCTTATAACACCCTGTTGTTTCATCTTTCTAGCATCCGGTTTCT  591

seq1  TAAAGAGCTTCCATTTAAAATGGAGGGAACAGCTACACAACTCATGGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCTTCCATTTAAAATGGAGGGAACAGCTACACAACTCATGGTGT  641

seq1  TAACCAATTGGATTCCTGGTGAAGTTCTCTTCCTGGCTCACCTCCTCATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATTGGATTCCTGGTGAAGTTCTCTTCCTGGCTCACCTCCTCATC  691

seq1  CTAACTAGTAAAGAGAGAGAACCTCTTGGTCTGTCTTTATGAAGCCATGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAGTAAAGAGAGAGAACCTCTTGGTCTGTCTTTATGAAGCCATGT  741

seq1  TTCTTCTCATGAAAGCCCTCACCTCATAACCTCATCTAGTCATAGTTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCATGAAAGCCCTCACCTCATAACCTCATCTAGTCATAGTTCTC  791

seq1  TCCCAAAGATCTTATCTCCAGAGTTCATCATACCATGGTAGGGATTTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGATCTTATCTCCAGAGTTCATCATACCATGGTAGGGATTTCCA  841

seq1  TATCCAAGTTTGGCAGCTAGTTGTTCAGTGGAGTGCTAGACTGGAATGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGTTTGGCAGCTAGTTGTTCAGTGGAGTGCTAGACTGGAATGTG  891

seq1  CAAAGCCCTGGTTTCCATCTTCATTACACACACACACACACGCACACACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCTGGTTTCCATCTTCATTACACACACACACACACGCACACACA  941

seq1  CACACACAGAGTATATTTACACATTGAGAGGGAAGCAGCAAAACCTGTAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAGTATATTTACACATTGAGAGGGAAGCAGCAAAACCTGTAG  991

seq1  TTCTTAGTAAAACTGTATTGTTCCTGATTCTACTCAACCATCATCTTTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTAAAACTGTATTGTTCCTGATTCTACTCAACCATCATCTTTTA  1041

seq1  AATTTATCTCCTTGCCATTGAATTC  1070
      |||||||||||||||||||||||||
seq2  AATTTATCTCCTTGCCATTGAATTC  1066

seq1: chr13_35427905_35429078
seq2: B6Ng01-100J20.g_69_1249

seq1  GAATTCATAAGTTTACTTCTAAAAGCTATCAATCATGTCAAAGAGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGTTTACTTCTAAAAGCTATCAATCATGTCAAAGAGGATAT  50

seq1  TAACAAGCAGGTGGACGAAGTAAGGAGATCAATTCAAGACCCAGAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCAGGTGGACGAAGTAAGGAGATCAATTCAAGACCCAGAGAAGA  100

seq1  AAGTCATCAACATATAGGAGATGATTGGAAATGTGGATGTGGAAGTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCAACATATAGGAGATGATTGGAAATGTGGATGTGGAAGTCAGC  150

seq1  ACCATGGATGAAGAAACTAGGAAAGAAATTGAGGTAAAATTTTTAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGATGAAGAAACTAGGAAAGAAATTGAGGTAAAATTTTTAAAAAT  200

seq1  TACAAAAATGCTGAGAATGAAAAAAAATGAGTTAAATGAAAATGCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATGCTGAGAATGAAAAAAAATGAGTTAAATGAAAATGCAAATG  250

seq1  GAAAAGCATCATCAATAGATAAAACCAAGTGGGATGTCATCAGCAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCATCATCAATAGATAAAACCAAGTGGGATGTCATCAGCAGACAA  300

seq1  GCATAAGAAGCCACTGGGTAGAAGTAGCACCTGTTATAAAAACTGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAAGCCACTGGGTAGAAGTAGCACCTGTTATAAAAACTGAAGAC  350

seq1  AAAGAAAATCTATTTAATGAAAACATAAAAAATTCCCTCAATCTGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATCTATTTAATGAAAACATAAAAAATTCCCTCAATCTGGGGAA  400

seq1  AAGAAATATATAACCCAACACAAGAGGCATTTATAATCCCAACCACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATATAACCCAACACAAGAGGCATTTATAATCCCAACCACTTAT  450

seq1  AAACAGAGAAGACTCTCTTTGTGACACATCATTTTAATGCTGTAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAAGACTCTCTTTGTGACACATCATTTTAATGCTGTAGTAGAA  500

seq1  AAATGCCCACTCACAAAAGCAACCACATCAAAACAAAACAAGGCCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCACTCACAAAAGCAACCACATCAAAACAAAACAAGGCCCCTCA  550

seq1  GCAGAAATATTAAAAGCCAGAATGATATATCCTAAGCTCTGAAAGCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATATTAAAAGCCAGAATGATATATCCTAAGCTCTGAAAGCAAAT  600

seq1  AGCTCACCAATTAATGTTGCTATCTCCAGAAAAATTATCTTTTAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCAATTAATGTTGCTATCTCCAGAAAAATTATCTTTTAAAATCA  650

seq1  ACCAAGAGAGAACCATTTTTGAGACCTGCACAAACTAAAGCAATTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGAGAACCATTTTTGAGACCTGCACAAACTAAAGCAATTCATGG  700

seq1  CCATCAACCCAGCACTGAAAAGGAGATGTACAGAAATTTTAAAGGGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACCCAGCACTGAAAAGGAGATGTACAGAAATTTTAAAGGGAGAC  750

seq1  CAAAGTCTAAATCATAAGAGTACAAGAAAGACTAAATCTCATGAGAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTAAATCATAAGAGTACAAGAAAGACTAAATCTCATGAGAGGAC  800

seq1  TAGACTGACAATGGAGAATTAAGAATGAATCCATTATGTTCAGCACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGACAATGGAGAATTAAGAATGAATCCATTATGTTCAGCACAGCA  850

seq1  AACACCTAACATGAATATAGGATAAAG-AAAGGAACAAACAGTAATCTAA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACACCTAACATGAATATAGGATAAAGAAAAGGAACAAACAGTAATCTAA  900

seq1  CCAAGAGTAGGAGAAATCAACAAATGTCTCTCAATAATAACTTTAG-ATG  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAAGAGTAGGAGAAATCAACAAATGTCTCTCAATAATAACTTTAGAATG  950

seq1  TGCCT-GGGACAGTAACTATT-GGTAAAGTGCTTGCTACATAAGTATGAG  996
      ||||| |||||||| |||||| |||||||||||||||| |||||||||||
seq2  TGCCTGGGGACAGT-ACTATTGGGTAAAGTGCTTGCTAAATAAGTATGAG  999

seq1  GACCT-GAGTTTGATGCC-TAGCAC-CCACAAAGAAAGCCA-TGAT-GGT  1041
      ||||| |||||||||||| |||||| | | ||||||||||| |||| |||
seq2  GACCTGGAGTTTGATGCCTTAGCACTCAATAAAGAAAGCCATTGATGGGT  1049

seq1  GTCACATG-CTCAT-AATGCC-TGTGTTGGTG-AGGTAAGCAGGTGAATC  1087
      |||||||| ||||| |||||| |||||||||| ||||||||| || ||||
seq2  GTCACATGCCTCATAAATGCCTTGTGTTGGTGAAGGTAAGCAAGT-AATC  1098

seq1  TCTGGGACTGAGTGGCTTGCCAGCCTACCATA-ACTCTTAAGGCTCAGTT  1136
       ||||||||| |||||||| ||||||  |||| |||||||| ||||||||
seq2  -CTGGGACTG-GTGGCTTG-CAGCCTCACATATACTCTTAA-GCTCAGTT  1144

seq1  CACAGTGGGATATCCTGTCTCAAAACAATACCATGAAT  1174
      |   ||||||| | ||||  | ||||||||||| ||||
seq2  CCAGGTGGGAT-TTCTGTTCCTAAACAATACCAGGAAT  1181