BAC Information

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BAC

Clone NameB6Ng01-101E11
Chromosome13 (Build37)
Map Location 18,227,720 - 18,228,792
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101E11.bB6Ng01-101E11.g
ACCDH910517DH910518
length1,2681,056
definitionDH910517|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E11, 5' end.DH910518|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggtcaatagcacagaacagatcctcaaaagatcatagagaag
aacttctttaaatccagatacaggaagcgaacagaacaataaatagacaa
gaaaagaaactgcccaaggcagatcacagttaaaacattaaacacagaac
agaaagaatactgaatgttgcaagagaaaaagcataagtccatacagtgg
aaagcatatcaaaatgcagctaatttctcaaaggaaactttgaaagccag
aagagccctgagcaatgcatttccaagtcttaaaataccatgagtccagc
aaaacttcttccataaatgatggagaaaaagaatgtttcatgataaaagc
aaccttaaaataagtattgaacagaccaattatgaagaaaatagaggaag
caatattttagcccgaagagaacaagaataatgaagaaactgtaaaaaga
aaacaaatgaagctataattatggaaatgcaaagtactattgacaatgaa
agacaccaaaaataagcaatacactgactataatcagcatatacatttca
ataataactttcaaaattaatgatccccgactctccagctgaaagacaca
gagcaagaaccaaactcatctgttatgtataagaaacacatcttagcttt
aaagacagcaccaccttagagtaaaaggatgggcaaaagtgctccaatca
gatgggacaaggaagcaaataggtatcactatcccatggtctgccaaaat
gaacttcaaagctaattagaagagataaatggggaggggacatttcataa
taatcaaggaagcagttaacctagaagacaactattgtaaacatatacgc
accaaattctggtgtatccaatcttataaaagtgtatcagaggattaaag
acattaattgacatcaacctatttaatataaataatttcaacaccccact
ttctctaatacacaggttacctgagcacaagcagagaaagaataaatgac
attgtacatcagatgacttacagtatataaaatattcctcacaaatatca
aagatatgtatcccagcacacatagagactgcctctaaatatcttatatc
acgagacacaaaatattacaattcagaacatggaacaggtcaacttatga
atccaactcatgaatacaggtcatactgaatataatgaactcagaactga
ggattcttctgaactgagaattaagacatccagaaccctctgggacaggt
cgcgatagggtggtctca
gaattcctataattacctgagactctataaagctttgggagctatgctct
ggacacaaagaccaagaatatatttcttatatgacaatatcacacaaact
ttgatcagaatcttagttagtgaatcttccacatcacagtcagaaggtcc
tatccaatgttccatgggctaaaaattagtattaaaatattttgctcact
ccaagccaaaggatgcccagataatcccttgacaacgatcaaatgacctt
catctgtgatgaactccacatgtgagctcagagtagccaagtaagcatcc
ttgtcaaagccttgtagcctgatgcccttcccttgtgctacactgtgctc
agtctgctcagacactgcttctattagctgatctttttttcatgtgtatg
catatgtggtatgtgcatgtgttttcacttgtatatagatgcgtgtgtgt
gtgtgtgtgtgtgtgtgtgtacaggtgcatgggcacatgtgagtgtgtaa
gttgatgtccaagaccttccttgatagatcttctaccttagtaagtggga
tcctcagtcagagccagaactcaaagctatggctagtctcagtggctggc
ttgctctgggaagcccatctctgcctatctttacattctaaggctagagt
tgcaggcagcacaccattcccttgtagtatttacatgggctctgaggatc
ctcatgcttaagccagagcttaaacctatggagcctaaaaacctaaaaga
aaaatcatgaatatcttttaaaacttccagcttggtttgaatttacattg
tactagtttaaataggtatattttgaggttttaactgctggggagggggc
tgttgcttgcattactgttcttcacatactagttaaacaaaacaagacaa
aacaaaaagctcctgacttgtagttgacccttagccaaagaccgtagtag
gcacttctcaaacttaagctgaccttaagatggggagagcttatactgga
gaaatggtatgcagccagtgacatctcatgaggccgggcctcttccaatc
ccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18227720_18228792
seq2: B6Ng01-101E11.g_68_1123 (reverse)

seq1  AAATGTGGATTGGAAGAGGCCCGCGCCTCATGGAGATGTCACTGGGCTGC  50
      ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||
seq2  AAATG-GGATTGGAAGAGGCCCG-GCCTCAT-GAGATGTCACT-GGCTGC  46

seq1  ATACAATTTCTCCACGTAATAAGCTCTCCCCATCTTTAAGGTTCAGCTTA  100
      |||| ||||||||| || |||||||||||||||| |||||| ||||||||
seq2  ATACCATTTCTCCA-GT-ATAAGCTCTCCCCATC-TTAAGG-TCAGCTTA  92

seq1  AGTTTTGAGGCAGTGACTACTATCGGTCTTTTGCTAAGGGTCAAACTTAC  150
      || ||||| | |||| |||||| |||||||| ||||||||||||   |||
seq2  AG-TTTGA-GAAGTGCCTACTA-CGGTCTTTGGCTAAGGGTCAA--CTAC  137

seq1  AAGTCAGGAGCTTTTTGTTTTGTCTTGTTTTGTTTTAAACTAGTATGTGA  200
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  AAGTCAGGAGCTTTTTGTTTTGTCTTGTTTTGTTT--AACTAGTATGTGA  185

seq1  AGAACAGTAATGCAAGCAACAGCCCCCTCCCCAGCAGTTAAAACCTC-AA  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAACAGTAATGCAAGCAACAGCCCCCTCCCCAGCAGTTAAAACCTCAAA  235

seq1  ATATACCTATTTAAAACTAGTACAATGTAAATTTCAAACCAAGCTGGAAG  299
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  ATATACCTATTT-AAACTAGTACAATGTAAA-TTCAAACCAAGCTGGAAG  283

seq1  TTTTAAAAGATATTCATTGATTTTTCTTTTAGGTTTTTAGGCTCCATAGG  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGATATTCA-TGATTTTTCTTTTAGGTTTTTAGGCTCCATAGG  332

seq1  TTTAAGCTCTGGCTTAAGCATGAGGATCCTCAGAGCCCATGTAAATACTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTCTGGCTTAAGCATGAGGATCCTCAGAGCCCATGTAAATACTA  382

seq1  CAAGGGAATGGTGTGCTGCCTGCAACTCTAGCCTTAGAATGTAAAGATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAATGGTGTGCTGCCTGCAACTCTAGCCTTAGAATGTAAAGATAG  432

seq1  GCAGAGATGGGCTTCCCAGAGCAAGCCAGCCACTGAGACTAGCCATAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATGGGCTTCCCAGAGCAAGCCAGCCACTGAGACTAGCCATAGCT  482

seq1  TTGAGTTCTGGCTCTGACTGAGGATCCCACTTACTAAGGTAGAAGATCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTGGCTCTGACTGAGGATCCCACTTACTAAGGTAGAAGATCTA  532

seq1  TCAAGGAAGGTCTTGGACATCAACTTACACACTCACATGTGCCCATGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAGGTCTTGGACATCAACTTACACACTCACATGTGCCCATGCAC  582

seq1  CTGTACACACACACACACACACACACACACACGCATCTATATACAAGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACACACACACACACACACACACACACGCATCTATATACAAGTGA  632

seq1  AAACACATGCACATACCACATATGCATACACATGAAAAAAAGATCAGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGCACATACCACATATGCATACACATGAAAAAAAGATCAGCTA  682

seq1  ATAGAAGCAGTGTCTGAGCAGACTGAGCACAGTGTAGCACAAGGGAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAGTGTCTGAGCAGACTGAGCACAGTGTAGCACAAGGGAAGGG  732

seq1  CATCAGGCTACAAGGCTTTGACAAGGATGCTTACTTGGCTACTCTGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCTACAAGGCTTTGACAAGGATGCTTACTTGGCTACTCTGAGCT  782

seq1  CACATGTGGAGTTCATCACAGATGAAGGTCATTTGATCGTTGTCAAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGGAGTTCATCACAGATGAAGGTCATTTGATCGTTGTCAAGGGA  832

seq1  TTATCTGGGCATCCTTTGGCTTGGAGTGAGCAAAATATTTTAATACTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGGCATCCTTTGGCTTGGAGTGAGCAAAATATTTTAATACTAAT  882

seq1  TTTTAGCCCATGGAACATTGGATAGGACCTTCTGACTGTGATGTGGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCCATGGAACATTGGATAGGACCTTCTGACTGTGATGTGGAAGA  932

seq1  TTCACTAACTAAGATTCTGATCAAAGTTTGTGTGATATTGTCATATAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAACTAAGATTCTGATCAAAGTTTGTGTGATATTGTCATATAAGA  982

seq1  AATATATTCTTGGTCTTTGTGTCCAGAGCATAGCTCCCAAAGCTTTATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTCTTGGTCTTTGTGTCCAGAGCATAGCTCCCAAAGCTTTATAG  1032

seq1  AGTCTCAGGTAATTATAGGAATTC  1073
      ||||||||||||||||||||||||
seq2  AGTCTCAGGTAATTATAGGAATTC  1056