BAC Information

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BAC

Clone NameB6Ng01-101J09
Chromosome19 (Build37)13 (Build37)
Map Location 12,033,688 - 12,033,99915,752,980 - 15,754,103
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMs4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
Downstream geneOsbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101J09.bB6Ng01-101J09.g
ACCDH910722DH910723
length8781,113
definitionDH910722|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J09, 5' end.DH910723|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,033,688 - 12,033,999)(15,752,980 - 15,754,103)
sequence
gaattcactatttatagtgtgtcagatacattgaagcctttaactaaaca
aatgactcatcacaatgaacatttgcaagatgtatggacaaaagggtgta
ctgtgtgacacatggtgatacttcagcgtccatgcccagatgttctttat
gttttattttgtcttgtttttgttgttgttttgttctgtttcttggtttt
agttttcttttgtgcaggaaataacaatggcagatatgaagggactggga
ggtgagtaggattggaatacatgatggaaaactcacaaagaatcaaaaag
acattggaagacaggaaggcaagaaggcgggaaggcgggaaggcaggcag
gcaggaaggcaggcaggcaggaaggcaggcaggcaggcaggaaggaagga
aggaaggaaggaaggaaggaaggcaggcaggaaggcaggcagacatggaa
aaagagaattaaaaagcagtaagcattcattagttctctgccttggactt
ctaacaccttgacttctatgctataccttgaactgtgagtcacaattaac
cctttgtcccttcagttgcttttgtcaaagtgttttatcatagcaacaga
agagaacaaagttagttcttttctttctttcttttttttttttttttttt
gtattttttgggtttgtttgtttcgttgttgtcaagatgaacaatacctt
tgtagataaagtctttagtagacatcctacatacagtgcctgattgagct
catttacataatacatttgcaccaatcatatcacattgtttcttaagtgc
agcagaccaaaggcttttaataaattcagactgtagtacaaatggttcat
tatttgggttcaggacatcaaagaattg
gaattcatttctctagttcaaaaccaaatacttgcagtgaaggatgttat
gtggggatatgtgttcttcataggtgagatggcttagaagtttgagccat
cgtagtccagagagtgtttggttagactcgtctgtttctgttcatagatg
tgatgaggcttcttatcactgacctcgaccctaagttcctgagcttctgg
cctcatgcttcagctcagcagtttatgatgtccccttcattgattatgtt
ctccacttttcttattttgctactttgtacttgttcaaaaagctcagaga
atcagaagagactcaagtcccgccaaatagattcaggacggaattgctga
tcacttaaatccgcctcttctaaagaacatgtagggtatgcccagattgc
cgtttcttatgcgcttgagcctggcatggcaggtttgatcagtgctgttt
ccctcaagtcagagcttagtgagagtcttcaggtccatgcagtcagaact
ttgttatcatctgtatggttcaacccagtccttactgaaggaaggcaatg
ggtccctccatgagaattttgaagactgaatgaggttatgataaggaggg
agttctgaaataatcctcgtcatagcgtgctggagaacaaacaatgttgc
tgcttacaccatggtgtattcatgaacagtttatcatgttagcctacagc
agggctcagatctgtctgtgtagctagtgcctagaatcctggagagtgtt
tgcattgcatttacttaagaagctgttgctgacgactaggaaagtctgtc
cagagcatcgggtgttctttcccacggcctcaaccatgagttagacaagc
atttccctgagacctgatattaaccaagaaggtgtgtgatccctaacaga
aaagtctacaaagtacttctcacatcaaggggagagaactaaaagtattg
tcagtggcattcgctgcattatagaataacaattaataaggcgatcgagg
acaatcaaaacaccggacagatagggacaggtttggataggatgtaaata
tgctactctatgggttttgttgttagattttgcctgagattttaatgtat
ttgtgttgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_12033688_12033999
seq2: B6Ng01-101J09.b_209_692 (reverse)

seq1  CAAAAAAAAAAAAAAAAAAAAAGAAAGAAAG-AAAGAAAGAA--------  41
         |||||||||||||||||||||||||||| ||||||  ||        
seq2  --CAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAGAACTAACTTTGTTC  48

seq1  ------------AGAAAAGAAAACTTTAACCTGA-CAA--GTAGGGA-AC  75
                  |  | | || ||||| ||   | |||  | ||||| | 
seq2  TCTTCTGTTGCTATGATAAAACACTTTGACAAAAGCAACTGAAGGGACAA  98

seq1  ATGTTTA--TATAA---AAACTT----GTAT-GCTCAGAAG--AA-----  108
      | | |||  | | |   | | ||    |||| ||  |||||  ||     
seq2  AGGGTTAATTGTGACTCACAGTTCAAGGTATAGCATAGAAGTCAAGGTGT  148

seq1  -AGAA----AAG---AAGAACTA--GAAAGC--AATGGGAT---ATGC--  141
       ||||    |||    |||||||  ||| ||  | ||   |   || |  
seq2  TAGAAGTCCAAGGCAGAGAACTAATGAATGCTTACTGCTTTTTAATTCTC  198

seq1  --ATTACAGGAAAG------------------------------------  153
         || || |   |                                    
seq2  TTTTTCCATGTCTGCCTGCCTTCCTGCCTGCCTTCCTTCCTTCCTTCCTT  248

seq1  -----------------CAGCATGGGAGGCTATTGGGAGG----------  176
                       | || ||   | ||    |   |          
seq2  CCTTCCTTCCTTCCTGCCTGCCTGCCTGCCTTCCTGCCTGCCTGCCTTCC  298

seq1  -GGAGGAAGG--GTCCAGCC-ACAGGAGAGGAGGGAGTACT-AAGAACAA  221
       |   |   |   ||| |||  |  |       |   | ||      |||
seq2  TGCCTGCCTGCCTTCCCGCCTTCCCGCCTTCTTGCCTTCCTGTCTTCCAA  348

seq1  AGTATTT----------------------GCATGAA----AATTCTA---  242
       || |||                       |||| |    ||| |||   
seq2  TGTCTTTTTGATTCTTTGTGAGTTTTCCATCATGTATTCCAATCCTACTC  398

seq1  ---TAACAGGGACTGAAGGGATAATCAGCAAAGGGTTTTGCTTTGAGAGA  289
         |  |||   ||  |      ||| || |  | | || | |  | | |
seq2  ACCTCCCAGTCCCTTCA-----TATCTGCCATTGTTATTTCCTGCACAAA  443

seq1  ACAAAAC----------------AAC--AACAACAACAAAA  312
      | |||||                |||  |||||||||||||
seq2  AGAAAACTAAAACCAAGAAACAGAACAAAACAACAACAAAA  484

seq1: chr13_15752980_15754103
seq2: B6Ng01-101J09.g_70_1182

seq1  GAATTCATTTCTCTAGTTCAAAACCAAATACTTGCAGTGAAGGATGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTCTAGTTCAAAACCAAATACTTGCAGTGAAGGATGTTAT  50

seq1  GTGGGGATATGTGTTCTTCATAGGTGAGATGGCTTAGAAGTTTGAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGATATGTGTTCTTCATAGGTGAGATGGCTTAGAAGTTTGAGCCAT  100

seq1  CGTAGTCCAGAGAGTGTTTGGTTAGACTCGTCTGTTTCTGTTCATAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTCCAGAGAGTGTTTGGTTAGACTCGTCTGTTTCTGTTCATAGATG  150

seq1  TGATGAGGCTTCTTATCACTGACCTCGACCCTAAGTTCCTGAGCTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGCTTCTTATCACTGACCTCGACCCTAAGTTCCTGAGCTTCTGG  200

seq1  CCTCATGCTTCAGCTCAGCAGTTTATGATGTCCCCTTCATTGATTATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTTCAGCTCAGCAGTTTATGATGTCCCCTTCATTGATTATGTT  250

seq1  CTCCACTTTTCTTATTTTGCTACTTTGTACTTGTTCAAAAAGCTCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTTCTTATTTTGCTACTTTGTACTTGTTCAAAAAGCTCAGAGA  300

seq1  ATCAGAAGAGACTCAAGTCCCGCCAAATAGATTCAGGACGGAATTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGAGACTCAAGTCCCGCCAAATAGATTCAGGACGGAATTGCTGA  350

seq1  TCACTTAAATCCGCCTCTTCTAAAGAACATGTAGGGTATGCCCAGATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAATCCGCCTCTTCTAAAGAACATGTAGGGTATGCCCAGATTGC  400

seq1  CGTTTCTTATGCGCTTGAGCCTGGCATGGCAGGTTTGATCAGTGCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTTATGCGCTTGAGCCTGGCATGGCAGGTTTGATCAGTGCTGTTT  450

seq1  CCCTCAAGTCAGAGCTTAGTGAGAGTCTTCAGGTCCATGCAGTCAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGTCAGAGCTTAGTGAGAGTCTTCAGGTCCATGCAGTCAGAACT  500

seq1  TTGTTATCATCTGTATGGTTCAACCCAGTCCTTACTGAAGGAAGGCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCATCTGTATGGTTCAACCCAGTCCTTACTGAAGGAAGGCAATG  550

seq1  GGTCCCTCCATGAGAATTTTGAAGACTGAATGAGGTTATGATAAGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCCATGAGAATTTTGAAGACTGAATGAGGTTATGATAAGGAGGG  600

seq1  AGTTCTGAAATAATCCTCGTCATAGCGTGCTGGAGAACAAACAATGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAAATAATCCTCGTCATAGCGTGCTGGAGAACAAACAATGTTGC  650

seq1  TGCTTACACCATGGTGTATTCATGAACAGTTTATCATGTTAGCCTACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACACCATGGTGTATTCATGAACAGTTTATCATGTTAGCCTACAGC  700

seq1  AGGGCTCAGATCTGTCTGTGTAGCTAGTGCCTAGAATCCTGGAGAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGATCTGTCTGTGTAGCTAGTGCCTAGAATCCTGGAGAGTGTT  750

seq1  TGCATTGCATTTAC-TAAGAAGCTGTTGCTGACGACTAGGAAAGTCTGTC  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCATTGCATTTACTTAAGAAGCTGTTGCTGACGACTAGGAAAGTCTGTC  800

seq1  CAGAGCATCGGGTGTTCTTT-CCACGGCCTCAACCATGAGTCAGACAAGC  848
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CAGAGCATCGGGTGTTCTTTCCCACGGCCTCAACCATGAGTTAGACAAGC  850

seq1  ATTTCCCTGAAGACCTGATATTAAACCAAGAAGGTGTGTGATCCCTAACA  898
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  ATTTCCCTG-AGACCTGATATT-AACCAAGAAGGTGTGTGATCCCTAACA  898

seq1  GAAAAGTCTACAAAGTACCTCTCACATC-AGGGGAGAGAACTAAAAGTA-  946
      |||||||||||||||||| ||||||||| |||||||||||||||||||| 
seq2  GAAAAGTCTACAAAGTACTTCTCACATCAAGGGGAGAGAACTAAAAGTAT  948

seq1  TGTCAGTGCCATTCGCCTGCATTATAAGATATAACAATAAATAAAGCGAT  996
      |||||||| |||||| ||||||||| ||| |||||||| ||||| |||||
seq2  TGTCAGTGGCATTCG-CTGCATTAT-AGA-ATAACAATTAATAAGGCGAT  995

seq1  CGAAGACAATCAAAACAACCGAACAAGATAGGGACAGTTTGGAATAGGAT  1046
      ||| |||||||||||| |||| || |||||||||||| || | |||||||
seq2  CGAGGACAATCAAAAC-ACCGGAC-AGATAGGGACAGGTTTGGATAGGAT  1043

seq1  GTAAAATATGCTACTCTTATGGGTTTTGTTGTTATTTAATTTTTGCCTTG  1096
      || ||||||||||||| ||||||||||||||    |||  ||||||||  
seq2  GT-AAATATGCTACTC-TATGGGTTTTGTTG----TTAGATTTTGCCT--  1085

seq1  GATTTTTTTATTTGTTTATTTTGTTGTT  1124
      ||  |||| || | ||| | ||||||||
seq2  GAGATTTTAATGTATTTGTGTTGTTGTT  1113