BAC Information

Click to search

BAC

Clone NameB6Ng01-101P03
Chromosome13 (Build37)
Map Location 64,259,503 - 64,423,800
singlet/doubletdoublet
Overlap geneHabp4, Cdc14b, 1110018J18Rik
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367
Downstream geneCtsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P03.bB6Ng01-101P03.g
ACCDH910977DH910978
length1,2351,085
definitionDH910977|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P03, 5' end.DH910978|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,422,572 - 64,423,800)(64,259,503 - 64,260,593)
sequence
gaattcacacaggagaggaaactgttcaaatgtcatgaccgcggaaaaaa
atttgcaccgacatcaaccctcagggtacaccaaagaatgcacactggaa
agaaaccattttcgtataatcaacatggagaaacatttgtacgacaggaa
atccttagtggccacgagagaattcatacggggagaaatccttccaatgt
aatgaatgtgggaaaactcttagccaattagctgaagacttagaatctta
gtcaaaccttagaatacatcagagaattcattatgggaagaaatcttatg
aactcagtgaatatatttatttattattatacataagtacactatagctg
tcttcagacacaccagaagagggtgtcagatttcattataggtagttgtg
agccaccatgtggttgctgagatttgaactcaggacctctggaagagcag
tcagtgctcttacccgctgagccatctcaccagccccggtaaggtcagtt
ctaaagctataccagagaattcagagagaggatatctgaggataaatctt
tcttacaaaagagtcatccattcgacccatgaagactttgacaggaaaaa
gctcttccaagtctgtaagaaaacagttcttggtgtcagtacatgtacag
aaaaaaacaggattcagcaggagaaaccatattactgactatgaatattt
gaaaagctttgttctaaggctacctgcagaatatatcaaaagaattcaca
gatgcttctggctctatgaaaactccttttatatgaaaccgtatcttgtt
agataaggctcacaaatcacagcctggtattctgttcgtaagtcataatt
tcatttttcctccaagcaatagcaactccagaatttccagtctccagtta
tgtaagcctcacttttgtggctgactgctagaatcgggttgcctacgatt
aatgacataatccaggcctgacaaatacaagattcccctgagataatgaa
cagggcccttcagaatagaacaagtatgagcaccccagggaggcgtatct
tgataaaaagacttgcaacagaatcctaatagcttggagtagaatctcag
aaaccaccgtaagtaggagggatttgggtggcaaggatcgtgtcatccca
gccattctactgttgtgagaatgggagctggattaaggtaattagctcaa
agggtcactcactggtgatcatgacaggggaagaa
gaattctacatttacaataggagacttggaggctgaagggttgacttagt
ggtaaagagcacatgtcacccttgctgaggaccctagtttggtacccaac
acccacataatgactcacactagccatgactctagttccaaaggatccta
caccctcttcttactccatgggcaccaagcactcacatggtatacataca
tacatatgcaggcaaaaactcatacacaaaaaatttaaatctaaaaaaaa
aattaaacaggagacttttgtaatatagaaattataccaccccttagaaa
ccactaatttactttctgtctgtatgaactttataattgatatttcccac
aaatgtactcattgccttttggtatattgtatctgggctccttttattta
gtatgatgttacagaaatgcagctggataaatagctctataataagagta
cttactgttcttggtaaaaacaaaaacaaaaacaaaaacaaaaaacaaaa
aaacaaacaaaaatctcccagagttttatttcccatacccacaagcaggt
gactcacaacagcctgtaacttcaggcccaaaggatccaaaaccctcttc
tggcttttgcaagcacacagatgcacgcgcacacacataaatctttaaaa
gttctacccatcacttgctaagtgttagcttccaaatttgggctataatt
aataatgccactgtctcatgcctataggttgttatttacatatgaagtac
aggtgcatatgttttcacttttgactccctttctccatgattctattgaa
ttttgaaatctaaattcagcctccaacatgtctacatgaagcagaaggcc
atatggaagctatgaagtttaatttgggggtgggtggaattgtactgctt
tttttttcctagtcctcacaccactttattttcccaccaatgatctatgc
tggtcccgtcccagaactctttcacatccttactaatatatgcttaaata
atattccttcaaaaaaaatggacgtcatccaggatcctctaccagctgta
taggagactagcattattggcgagtctagttgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64422572_64423800
seq2: B6Ng01-101P03.b_50_1284 (reverse)

seq1  TTCTTCCCCTGGTCATGTACTCAGGGTAGCTGACCCTTTTAGCTGATTTC  50
      |||||||||| ||||||  | |  |  || ||||||||| |||| | || 
seq2  TTCTTCCCCT-GTCATGATCACCAGTGAG-TGACCCTTTGAGCT-AATTA  47

seq1  CCTTTATCCAGCTCCCA-TCTCACACACAGTAGGAATGCTGGGATGACA-  98
      |||| |||||||||||| ||||||| ||||||| |  |||||||||||| 
seq2  CCTTAATCCAGCTCCCATTCTCACA-ACAGTAGAATGGCTGGGATGACAC  96

seq1  GATCCTTGCCA-CCATATCCTTC--ATCTAC-GTGGTTTCTGGAGA-TCT  143
      ||||||||||| ||| |||| ||  |  ||| ||||||||| |||| |||
seq2  GATCCTTGCCACCCAAATCCCTCCTACTTACGGTGGTTTCT-GAGATTCT  145

seq1  AACTCAAGCTATTAGGCTTCTGTGGCAAGTTCTTTTTATC-AGATACGCC  192
      |   |||||||||||| |||||| ||||| |||||||||| |||||||||
seq2  ACTCCAAGCTATTAGGATTCTGTTGCAAG-TCTTTTTATCAAGATACGCC  194

seq1  TTCCCTGGGGTGCTCATACTTGTTCTATTCTGAAGGGCCCTG-TCA-TAT  240
       ||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  -TCCCTGGGGTGCTCATACTTGTTCTATTCTGAAGGGCCCTGTTCATTAT  243

seq1  CTCAGGGGAATCTTGTATTTGTCAGGCCTGG-TTATGTCATAAATCGTAG  289
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  CTCAGGGGAATCTTGTATTTGTCAGGCCTGGATTATGTCATTAATCGTAG  293

seq1  GC-ACCCGGTTCTAGCAGTCAGTCAC-AGAGTGAGGCTTACATAAACTGG  337
      || ||||| ||||||||||||| ||| | |||||||||||||| ||||||
seq2  GCAACCCGATTCTAGCAGTCAGCCACAAAAGTGAGGCTTACAT-AACTGG  342

seq1  AGACTGGAAATTCTGGAGTTGCTATTGCTTGGAGGAAAAATGAAATTATG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAAATTCTGGAGTTGCTATTGCTTGGAGGAAAAATGAAATTATG  392

seq1  ACTTACGAACAGAATACCAGGCTGTGATTTGTGAGCCTTATCTAACAAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACGAACAGAATACCAGGCTGTGATTTGTGAGCCTTATCTAACAAGA  442

seq1  TACGGTTTCATATAAAAGGAGTTTTCATAGAGCCAGAAGCATCTGTGAAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTTTCATATAAAAGGAGTTTTCATAGAGCCAGAAGCATCTGTGAAT  492

seq1  TCTTTTGATATATTCTGCAGGTAGCCTTAGAACAAAGCTTTTCAAATATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGATATATTCTGCAGGTAGCCTTAGAACAAAGCTTTTCAAATATT  542

seq1  CATAGTCAGTAATATGGTTTCTCCTGCTGAATCCTG-TTTTTTCTGTACA  586
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATAGTCAGTAATATGGTTTCTCCTGCTGAATCCTGTTTTTTTCTGTACA  592

seq1  TGTACTGACACCAAGAACTGTTTTCTTACAGACTTGGAAGAGCTTTTTCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGACACCAAGAACTGTTTTCTTACAGACTTGGAAGAGCTTTTTCC  642

seq1  TGTCAAAGTCTTCATGGGTCGAATGGATGACTCTTTTGTAAGAAAGATTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGTCTTCATGGGTCGAATGGATGACTCTTTTGTAAGAAAGATTT  692

seq1  ATCCTCAGATATCCTCTCTCTGAATTCTCTGGTATAGCTTTAGAACTGAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGATATCCTCTCTCTGAATTCTCTGGTATAGCTTTAGAACTGAC  742

seq1  CTTACCGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCT  792

seq1  TCCAGAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACT  842

seq1  ACCTATAATGAAATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCTAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATGAAATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCTAT  892

seq1  AGTGTACTTATGTATAATAATAAATAAATATATTCACTGAGTTCATAAGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTATGTATAATAATAAATAAATATATTCACTGAGTTCATAAGA  942

seq1  TTTCTTCCCATAATGAATTCTCTGATGTATTCTAAGGTTTGACTAAGATT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCATAATGAATTCTCTGATGTATTCTAAGGTTTGACTAAGATT  992

seq1  CTAAGTCTTCAGCTAATTGGCTAAGAGTTTTCCCACATTCATTACATTGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTTCAGCTAATTGGCTAAGAGTTTTCCCACATTCATTACATTGG  1042

seq1  AAGGATTTCTCCCCGTATGAATTCTCTCGTGGCCACTAAGGATTTCCTGT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTCTCCCCGTATGAATTCTCTCGTGGCCACTAAGGATTTCCTGT  1092

seq1  CGTACAAATGTTTCTCCATGTTGATTATACGAAAATGGTTTCTTTCCAGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAAATGTTTCTCCATGTTGATTATACGAAAATGGTTTCTTTCCAGT  1142

seq1  GTGCATTCTTTGGTGTACCCTGAGGGTTGATGTCGGTGCAAATTTTTTTC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTCTTTGGTGTACCCTGAGGGTTGATGTCGGTGCAAATTTTTTTC  1192

seq1  CGCGGTCATGACATTTGAACAGTTTCCTCTCCTGTGTGAATTC  1229
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTCATGACATTTGAACAGTTTCCTCTCCTGTGTGAATTC  1235

seq1: chr13_64259503_64260593
seq2: B6Ng01-101P03.g_69_1153

seq1  GAATTCTACATTTACAATAGGAGACTTGGAGGCTGAAGGGTTGACTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTACAATAGGAGACTTGGAGGCTGAAGGGTTGACTTAGT  50

seq1  GGTAAAGAGCACATGTCACCCTTGCTGAGGACCCTAGTTTGGTACCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGAGCACATGTCACCCTTGCTGAGGACCCTAGTTTGGTACCCAAC  100

seq1  ACCCACATAATGACTCACACTAGCCATGACTCTAGTTCCAAAGGATCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAATGACTCACACTAGCCATGACTCTAGTTCCAAAGGATCCTA  150

seq1  CACCCTCTTCTTACTCCATGGGCACCAAGCACTCACATGGTATACATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTCTTACTCCATGGGCACCAAGCACTCACATGGTATACATACA  200

seq1  TACATATGCAGGCAAAAACTCATACACAAAAAATTTAAATCTAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGCAGGCAAAAACTCATACACAAAAAATTTAAATCTAAAAAAAA  250

seq1  AATTAAACAGGAGACTTTTGTAATATAGAAATTATACCACCCCTTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAGGAGACTTTTGTAATATAGAAATTATACCACCCCTTAGAAA  300

seq1  CCACTAATTTACTTTCTGTCTGTATGAACTTTATAATTGATATTTCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATTTACTTTCTGTCTGTATGAACTTTATAATTGATATTTCCCAC  350

seq1  AAATGTACTCATTGCCTTTTGGTATATTGTATCTGGGCTCCTTTTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTCATTGCCTTTTGGTATATTGTATCTGGGCTCCTTTTATTTA  400

seq1  GTATGATGTTACAGAAATGCAGCTGGATAAATAGCTCTATAATAAGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGTTACAGAAATGCAGCTGGATAAATAGCTCTATAATAAGAGTA  450

seq1  CTTACTGTTCTTGGTAAAAACAAAAACAAAAACAAAAACAAAAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTTCTTGGTAAAAACAAAAACAAAAACAAAAACAAAAAACAAAA  500

seq1  AAACAAACAAAAATCTCCCAGAGTTTTATTTCCCATACCCACAAGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAATCTCCCAGAGTTTTATTTCCCATACCCACAAGCAGGT  550

seq1  GACTCACAACAGCCTGTAACTTCAGGCCCAAAGGATCCAAAACCCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACAACAGCCTGTAACTTCAGGCCCAAAGGATCCAAAACCCTCTTC  600

seq1  TGGCTTTTGCAAGCACACAGATGCACGCGCACACACATAAATCTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGCAAGCACACAGATGCACGCGCACACACATAAATCTTTAAAA  650

seq1  GTTCTACCCATCACTTGCTAAGTGTTAGCTTCCAAATTTGGGCTATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACCCATCACTTGCTAAGTGTTAGCTTCCAAATTTGGGCTATAATT  700

seq1  AATAATGCCACTGTCTCATGCCTATAGGTTGTTATTTACATATGAAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCCACTGTCTCATGCCTATAGGTTGTTATTTACATATGAAGTAC  750

seq1  AGGTGCATATGTTTTCACTTTTGACTCCCTTTCTCCATGATTCTATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATATGTTTTCACTTTTGACTCCCTTTCTCCATGATTCTATTGAA  800

seq1  TTTTGAAATCTAAATTCAGCCTCCAACATGTCTACATGAAGCAGAAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATCTAAATTCAGCCTCCAACATGTCTACATGAAGCAGAAGGCC  850

seq1  ATATGGAAGCTATGAAGTTTAATTTGGGGGTGGGTGGAATTGTACTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAGCTATGAAGTTTAATTTGGGGGTGGGTGGAATTGTACTGCTT  900

seq1  TTTTTTTCCTAGTCCTCACACCACTTTA-TATCCCACCAATGATCTATGC  949
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  TTTTTTTCCTAGTCCTCACACCACTTTATTTTCCCACCAATGATCTATGC  950

seq1  TGGTCCCGTCCCAG-ACTC-TTCACATCCTTACTAATATATGCTTTATAT  997
      |||||||||||||| |||| ||||||||||||||||||||||||| |   
seq2  TGGTCCCGTCCCAGAACTCTTTCACATCCTTACTAATATATGCTTAAATA  1000

seq1  ATA-TCCTTCAAAAAAAAAATGACCGTCATCCCAGGGATCCTCTAACCAA  1046
      ||| ||||||  ||||||||||  ||||||||   ||||||||||  | |
seq2  ATATTCCTTC--AAAAAAAATGGACGTCATCC--AGGATCCTCTA--CCA  1044

seq1  GCTGTATAGGGAGACTAGCAATATTGGCGAGTTCTAGGTTTGAGT  1091
      |||||||| ||||||||||| |||||||||| |||||  ||||||
seq2  GCTGTATA-GGAGACTAGCATTATTGGCGAG-TCTAG--TTGAGT  1085