BAC Information

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BAC

Clone NameB6Ng01-101P18
Chromosome5 (Build37)13 (Build37)
Map Location 77,731,293 - 77,731,4837,206,813 - 7,207,559
singlet/doubletsingletsinglet
Overlap gene2610024G14Rik
Upstream geneClock, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest
Downstream genePolr2b, Igfbp7, Pea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P18.bB6Ng01-101P18.g
ACCDH911005DH911006
length940746
definitionDH911005|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P18, 5' end.DH911006|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,731,293 - 77,731,483)(7,206,813 - 7,207,559)
sequence
gaattcttcatccaaacaagtcctcctctactttcatgccttgttatttg
cctcactgagtttgactagggttctagcccaagtatgtgtgggaagttat
tcactggagcagtagcaattaatcagtggctatattcctgaggaaaatcg
caccttacctaacaatcattaattgttaacaatctctcagggagagttgc
aagttgtagaataactctctaagaactgttaaccagggaggctctagagc
cttgcaaaacaatacaggatatttctgttgttcaatggtaagaccctatt
gctgaagacactacagtatttacttaaaggacatgggtaaatcataatgg
agcataactaaaggcttcctctgctgtatctaaccttcccagatctagca
gatgaaatgtagactactgagggagaaaagatcttaaaagttgtgcgggc
tagtattacattaacctgacacaaggttgagtcttctttttttttcccat
tttttattaggtatttggctcatttacatttccaatgctataccaaaagt
cccctatacccacccaccctcactcccctacccacccacttccccttttt
ggccctggcgttcccctgtactggggcatatgaagtttgcatgtccaatg
ggcctctctttccagtgatggccgactaggccatcttttgatacatatgc
agctagagtcaagagttccggggtactggttagttcataatgttgttcca
cctatagggttgcagatccctttagctccttggtaatttctctagctcct
ccattggggagccctgtgatccatccattagctgactgtgagcatccact
tctgtgtttgctacgccccggcattgtctcacaaggggaccactacatct
gggtcctttcgataaaatcttgctagtgtatgcatggtgt
gaattcactgctgtaaattatctaattttcatttatttggagactagtat
tagcagaagtaatttaacattttttgctttttttttcttttgagaacata
gaaagaagcttgaagcatggctcacaaggcagctatgatactagcctggg
gtgcaggggaaaagtcctggaagttaaaccccaggtatttaacagtcaca
gatatatggattatatttgtaaaataaatgggtatacagtacgtttttca
gatgtattgcttttttcttaaaaaaggaaaaaaacccacaatttttctac
ttcacagaaagtgacaaacactataataatttaattattaatataaagcc
gaccaatccagagaactttggctcttaccaccaccaccaccaccgccacc
accaaaaaacaacagggagacactttctagggcgaggagagagctaaagc
atgacaggggtgaaaagaaaaaagaaaacttgaggcatgcctggggggtg
gggagagggcgaaaccatctcagaggaaaagggaaggagaaatgggatga
ggaactgtgtgtagggggagtggtggtaacatctggaatggtatctgtaa
aataatttataaactgatccccaatgaaagtgtcttctggcaggaagatg
ctgctttgtaccatgtgtagaccaggaggctgatgagatattctttctcc
ccacaaaacgggatcttgacgggaaactgtgctctggataccattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77731293_77731483
seq2: B6Ng01-101P18.b_534_724 (reverse)

seq1  AGTCGGCCATCACTGGAAAGAGAGGCCCATAGGACTTGCAAACTTTATAT  50
      |||||||||||||||||||||||||||||| |||| ||||||||| ||||
seq2  AGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTCATAT  50

seq1  GCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAG  100
      |||||||||||||||||  ||||||||||||||||| |||||||||| ||
seq2  GCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGAAGTGGGTGGGTAG  100

seq1  GGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAAT  150
      ||||||| |||||||||| ||| |||||||||||||||||||||||||||
seq2  GGGAGTGAGGGTGGGTGGGTATAGGGGACTTTTGGTATAGCATTGGAAAT  150

seq1  GTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAAA  191
      |||||||||  |||||||||||||||||||| |||||||||
seq2  GTAAATGAGCCAAATACCTAATAAAAAATGGGAAAAAAAAA  191

seq1: chr13_7206813_7207559
seq2: B6Ng01-101P18.g_71_816

seq1  GAATTCACTGCTGTAAATTATCTAATTTTCATTTATTTGGAGACTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGTAAATTATCTAATTTTCATTTATTTGGAGACTAGTAT  50

seq1  TAGCAGAAGTAATTTAACATTTTTTGCTTTTTTTTTCTTTTGAGAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGTAATTTAACATTTTTTGCTTTTTTTTTCTTTTGAGAACATA  100

seq1  GAAAGAAGCTTGAAGCATGGCTCACAAGGCAGCTATGATACTAGCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCTTGAAGCATGGCTCACAAGGCAGCTATGATACTAGCCTGGG  150

seq1  GTGCAGGGGAAAAGTCCTGGAAGTTAAACCCCAGGTATTTAACAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGGAAAAGTCCTGGAAGTTAAACCCCAGGTATTTAACAGTCACA  200

seq1  GATATATGGATTATATTTGTAAAATAAATGGGTATACAGTACGTTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGGATTATATTTGTAAAATAAATGGGTATACAGTACGTTTTTCA  250

seq1  GATGTATTGCTTTTTTCTTAAAAAAGGAAAAAAACCCACAATTTTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTGCTTTTTTCTTAAAAAAGGAAAAAAACCCACAATTTTTCTAC  300

seq1  TTCACAGAAAGTGACAAACACTATAATAATTTAATTATTAATATAAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAAAGTGACAAACACTATAATAATTTAATTATTAATATAAAGCC  350

seq1  GACCAATCCAGAGAACTTTGGCTCTTACCACCACCACCACCACCGCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATCCAGAGAACTTTGGCTCTTACCACCACCACCACCACCGCCACC  400

seq1  ACCAAAAAACAACAGGGAGACACTTTCTAGGGCGAGGAGAGAGCTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAACAACAGGGAGACACTTTCTAGGGCGAGGAGAGAGCTAAAGC  450

seq1  ATGACAGGGGTGAAAAGAAAAAAGAAAACTTGAGGCATGCCTGGGGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGGGTGAAAAGAAAAAAGAAAACTTGAGGCATGCCTGGGGGGTG  500

seq1  GGGAGAGGGCGAAACCATCTCAGAGGAAAAGGGAAGGAGAAATGGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGCGAAACCATCTCAGAGGAAAAGGGAAGGAGAAATGGGATGA  550

seq1  GGAACTGTGTGTAGGGGGAGTGGTGGTAACATCTGGAATGTAAATAAATA  600
      ||||||||||||||||||||||||||||||||||||||||   ||   ||
seq2  GGAACTGTGTGTAGGGGGAGTGGTGGTAACATCTGGAATG-GTATCTGTA  599

seq1  AAATAATTTAAAAAAAGATCCCCAATGAAAGTGTCTCAAGGCAGGAGGAT  650
      |||||||||| |||  ||||||||||||||||||||   ||||||| |||
seq2  AAATAATTTATAAACTGATCCCCAATGAAAGTGTCTTCTGGCAGGAAGAT  649

seq1  GCTGCTCTGTAGTATGTGTAGCCCAGGAGGCTGATGAAAAATTCCTTCTC  700
      |||||| ||||  |||||||| ||||||||||||||| | |||| |||||
seq2  GCTGCTTTGTACCATGTGTAGACCAGGAGGCTGATGAGATATTCTTTCTC  699

seq1  CCCACAATACCTGATCTTGAGGGGAAACTGTGCTCTGGATACCATTG  747
      ||||||| ||  |||||||| ||||||||||||||||||||||||||
seq2  CCCACAAAACGGGATCTTGACGGGAAACTGTGCTCTGGATACCATTG  746