BAC Information

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BAC

Clone NameB6Ng01-102F03
Chromosome13 (Build37)
Map Location 90,419,278 - 90,600,000
singlet/doubletdoublet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F03.bB6Ng01-102F03.g
ACCDH911246DH911247
length1,2521,126
definitionDH911246|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F03, 5' end.DH911247|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,598,733 - 90,600,000)(90,419,278 - 90,420,421)
sequence
gaattctacaaaaaaagcatgaaaatcaattgagttgggatgtatgaaat
gaagcttcgatgatctccagaccatagatttgattaaagctgtttgtata
cgtcatttcctgaggaagactagattcaaatatagaaattatcttggctt
tatagcatttcaaaattatatatttatttcacacaaatcttgtgccattt
tgtcatttttaaattttgtgcccacaaatttgaacattttagacagaatc
agtgattaagtaatgaacaaaaccccaaaaatagaacaggagcttaagag
aacacaaagtacattttccatattcaccataatcaagattcattagatgg
tgttttccaggaataacagtttttgtgtgatttcttactcatatttttga
tgactttatatttttgatacaataaactagatgaatggtattctttttta
atcaatcaattaattaattaattaattaattaattaattttacactcccc
ctgccccgtttaccatcctactgctccacatcccatcttcctccccacct
ccctgtctctactccttaccccacctgacctctaaactccttggagtctc
cagtctcttgaaggttaggtgcatcatctctgaatgaacacagcagtcct
ttgctgtatgtgtgttcggggcctcatattagctggtgtatgctgtctgt
ttggtggtccagtgtttgagaaatctcaggggtccagattaattgagact
gttggtcctcctacaggatcaccttctcctcagcttttttctaccttccc
taattcaacgaacctattaaaacacgcatttattgatgtcatctttgtgt
tgcaggaaatattacaaaagaaacagcaagtttccatgctatacccagct
accctccaccccagcgggctgggtgagcatgcactggcagataatggccg
gcctgttcatatctctttctgactcagagctccaaaatctccctacttaa
cccctcaaatttccactggcaggtcgataccgtggataggcccaaactac
aaactctcatggccttttgtggtgcaaatctggcaaccccatgctttgca
cggtactttctctttggaacccagtcaaccacaccactattaaaaccaat
aacttagttcagaaatcatgtactcaattgctggtgcacacacgaaatct
taatctggtagccaatatctgttaatctctggtgggtattcttggcgggt
cc
gaattcaggctagatctcaacaagcataggaaaatgtgggaaccctggac
ttcatcagtgataattttgagagaaacacttccttcaactcaggaaaggg
tggatctgtgtatatagttatcagttgatgctcatgtgccctctccaggc
tgatgtgacttaagaaacacagggcacacatagaccaaccatcccagctg
ctacactttctgattgaagtcaccgactggtgcatgagggatgaaggcca
agcaatctctcccgccaacacaggctgctttgagccacactctgcagtgc
tcttgtcctttcagtgagcaattccaattccagtgtctgtggtagaataa
gagttagggaacatgaatagaaatctaacactttcccataccacacaggc
cattctggtctgtaggctggcatatgcatggtgtctttatgagaaaggca
gctgcagggggtttctctgggcatcgaatctcatgctttctgccatgtga
ccctgacctggccacagctaataagaccagggactgatttttgatacaaa
ggcagcctgtttagacatggctacagcagcttttcagtaagtatggtgac
aagctgaactaatcagattctctcttttgatgaatctaaatgccaggcat
ccagaggtttggcacagtggagtagtagagaataaggaagatgaaggaaa
aaaggggtaccagtgagaagtcttgtgctgaattataggcagctctgaag
caaaaaggataataatactggaggcagctagtcagaaacatgcggactct
cagaaacaaggcagagttcagtggagttaggtcatgcacgtatacataac
gttaaatagccaagcatggtgatacacacctttatctatggtgcttggga
agcagaggcagtggagatttgtagttttagaccatccaactctatataat
agttgcagctcagcagggctatatataagacactgacccaaatataataa
ttataatatatgtatatataatacataatactactatgtaaaatttacat
tgtttttctgcattatttagtagtatctatatttagtagcatgctatttc
tgtcaagagtttcatgatgcccgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90598733_90600000
seq2: B6Ng01-102F03.b_44_1295 (reverse)

seq1  GGACCCGCCAGGATTCACCACCAGAGGATTTAGATTTAATATGGCTTACA  50
      |||||||||| || |  |||||||| |||| | |    |||| |  ||| 
seq2  GGACCCGCCAAGAATACCCACCAGA-GATTAACA---GATATTGGCTACC  46

seq1  GGATTAGGATTCTAGTTGTTGCACCCAGCAATTGAGTTACCATTGATTCT  100
       ||||| |||| | ||   |||| |||||||||||||   |||   ||||
seq2  AGATTAAGATT-TCGTGTGTGCA-CCAGCAATTGAGT--ACATGATTTCT  92

seq1  GAACTAAGTTTATGTGGTGTTTTCCTTTGTGTGGTG-GTTTGACTGGGTT  149
      ||||||||||  ||    |||||  |    |||||| | |||||||||||
seq2  GAACTAAGTTATTG----GTTTTAAT---AGTGGTGTGGTTGACTGGGTT  135

seq1  CCAGAGAGAAAGATACAGTGGCAAAGCATGGGGTTGCCAGATGTGCACCA  199
      ||| |||||||| ||| || |||||||||||||||||||||| |||||||
seq2  CCAAAGAGAAAG-TACCGT-GCAAAGCATGGGGTTGCCAGATTTGCACCA  183

seq1  CAAAAGGCCATGAGAGTTTTGTAGTTTGGGCCTAT-CACGGTATCGACCT  248
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  CAAAAGGCCATGAGAG-TTTGTAGTTTGGGCCTATCCACGGTATCGACCT  232

seq1  GCCAGTGGAAATTTGAGGGGTTAAGTAGGGAGATTTTGGAGCTCTGAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGAAATTTGAGGGGTTAAGTAGGGAGATTTTGGAGCTCTGAGTC  282

seq1  AGAAAGAGATATGAACAGGCCGGCCATTATCTGCCAGTGCATGCTCACCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGATATGAACAGGCCGGCCATTATCTGCCAGTGCATGCTCACCC  332

seq1  AGCCCGCTGGGGTGGAGGGTAGCTGGGTATAGCATGGAAACTTGCTGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGCTGGGGTGGAGGGTAGCTGGGTATAGCATGGAAACTTGCTGTTT  382

seq1  CTTTTGTAATATTTCCTGCAACACAAAGATGACATCAATAAATGCGTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAATATTTCCTGCAACACAAAGATGACATCAATAAATGCGTGTT  432

seq1  TTAATAGGTTCGTTGAATTAGGGAAGGTAGAAAAAAGCTGAGGAGAAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGTTCGTTGAATTAGGGAAGGTAGAAAAAAGCTGAGGAGAAGGT  482

seq1  GATCCTGTAGGAGGACCAACAGTCTCAATTAATCTGGACCCCTGAGATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTAGGAGGACCAACAGTCTCAATTAATCTGGACCCCTGAGATTT  532

seq1  CTCAAACACTGGACCACCAAACAGACAGCATACACCAGCTAATATGAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACTGGACCACCAAACAGACAGCATACACCAGCTAATATGAGGC  582

seq1  CCCGAACACACATACAGCAAAGGACTGCTGTGTTCATTCAGAGATGATGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAACACACATACAGCAAAGGACTGCTGTGTTCATTCAGAGATGATGC  632

seq1  ACCTAACCTTCAAGAGACTGGAGACTCCAAGGAGTTTAGAGGTCAGGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCTTCAAGAGACTGGAGACTCCAAGGAGTTTAGAGGTCAGGTGG  682

seq1  GGTAAGGAGTAGAGACAGGGAGGTGGGGAGGAAGATGGGATGTGGAGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGAGTAGAGACAGGGAGGTGGGGAGGAAGATGGGATGTGGAGCAG  732

seq1  TAGGATGGTAAACGGGGCAGGGGGAGTGTAAAATTAATTAATTAATTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGTAAACGGGGCAGGGGGAGTGTAAAATTAATTAATTAATTAAT  782

seq1  TAATTAATTAATTGATTGATTAAAAAAGAATACCATTCATCTAGTTTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTAATTGATTGATTAAAAAAGAATACCATTCATCTAGTTTATT  832

seq1  GTATCAAAAATATAAAGTCATCAAAAATATGAGTAAGAAATCACACAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAAATATAAAGTCATCAAAAATATGAGTAAGAAATCACACAAAA  882

seq1  ACTGTTATTCCTGGAAAACACCATCTAATGAATCTTGATTATGGTGAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTCCTGGAAAACACCATCTAATGAATCTTGATTATGGTGAATA  932

seq1  TGGAAAATGTACTTTGTGTTCTCTTAAGCTCCTGTTCTATTTTTGGGGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGTACTTTGTGTTCTCTTAAGCTCCTGTTCTATTTTTGGGGTT  982

seq1  TTGTTCATTACTTAATCACTGATTCTGTCTAAAATGTTCAAATTTGTGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTACTTAATCACTGATTCTGTCTAAAATGTTCAAATTTGTGGG  1032

seq1  CACAAAATTTAAAAATGACAAAATGGCACAAGATTTGTGTGAAATAAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTTAAAAATGACAAAATGGCACAAGATTTGTGTGAAATAAATA  1082

seq1  TATAATTTTGAAATGCTATAAAGCCAAGATAATTTCTATATTTGAATCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTGAAATGCTATAAAGCCAAGATAATTTCTATATTTGAATCTA  1132

seq1  GTCTTCCTCAGGAAATGACGTATACAAACAGCTTTAATCAAATCTATGGT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTCAGGAAATGACGTATACAAACAGCTTTAATCAAATCTATGGT  1182

seq1  CTGGAGATCATCGAAGCTTCATTTCATACATCCCAACTCAATTGATTTTC  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATCATCGAAGCTTCATTTCATACATCCCAACTCAATTGATTTTC  1232

seq1  ATGCTTTTTTTGTAGAATTC  1268
      ||||||||||||||||||||
seq2  ATGCTTTTTTTGTAGAATTC  1252

seq1: chr13_90419278_90420421
seq2: B6Ng01-102F03.g_68_1193

seq1  GAATTCAGGCTAGATCTCAACAAGCATAGGAAAATGTGGGAACCCTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTAGATCTCAACAAGCATAGGAAAATGTGGGAACCCTGGAC  50

seq1  TTCATCAGTGATAATTTTGAGAGAAACACTTCCTTCAACTCAGGAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGTGATAATTTTGAGAGAAACACTTCCTTCAACTCAGGAAAGGG  100

seq1  TGGATCTGTGTATATAGTTATCAGTTGATGCTCATGTGCCCTCTCCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGTGTATATAGTTATCAGTTGATGCTCATGTGCCCTCTCCAGGC  150

seq1  TGATGTGACTTAAGAAACACAGGGCACACATAGACCAACCATCCCAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGACTTAAGAAACACAGGGCACACATAGACCAACCATCCCAGCTG  200

seq1  CTACACTTTCTGATTGAAGTCACCGACTGGTGCATGAGGGATGAAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTTCTGATTGAAGTCACCGACTGGTGCATGAGGGATGAAGGCCA  250

seq1  AGCAATCTCTCCCGCCAACACAGGCTGCTTTGAGCCACACTCTGCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTCTCCCGCCAACACAGGCTGCTTTGAGCCACACTCTGCAGTGC  300

seq1  TCTTGTCCTTTCAGTGAGCAATTCCAATTCCAGTGTCTGTGGTAGAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTTTCAGTGAGCAATTCCAATTCCAGTGTCTGTGGTAGAATAA  350

seq1  GAGTTAGGGAACATGAATAGAAATCTAACACTTTCCCATACCACACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGGAACATGAATAGAAATCTAACACTTTCCCATACCACACAGGC  400

seq1  CATTCTGGTCTGTAGGCTGGCATATGCATGGTGTCTTTATGAGAAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGTCTGTAGGCTGGCATATGCATGGTGTCTTTATGAGAAAGGCA  450

seq1  GCTGCAGGGGGTTTCTCTGGGCATCGAATCTCATGCTTTCTGCCATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGGGGTTTCTCTGGGCATCGAATCTCATGCTTTCTGCCATGTGA  500

seq1  CCCTGACCTGGCCACAGCTAATAAGACCAGGGACTGATTTTTGATACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCTGGCCACAGCTAATAAGACCAGGGACTGATTTTTGATACAAA  550

seq1  GGCAGCCTGTTTAGACATGGCTACAGCAGCTTTTCAGTAAGTATGGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTGTTTAGACATGGCTACAGCAGCTTTTCAGTAAGTATGGTGAC  600

seq1  AAGCTGAACTAATCAGATTCTCTCTTTTGATGAATCTAAATGCCAGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAACTAATCAGATTCTCTCTTTTGATGAATCTAAATGCCAGGCAT  650

seq1  CCAGAGGTTTGGCACAGTGGAGTAGTAGAGAATAAGGAAGATGAAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTTGGCACAGTGGAGTAGTAGAGAATAAGGAAGATGAAGGAAA  700

seq1  AAAGGGGTACCAGTGAGAAGTCTTGTGCTGAATTATAGGCAGCTCTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTACCAGTGAGAAGTCTTGTGCTGAATTATAGGCAGCTCTGAAG  750

seq1  CAAAAAGGATAATAATACTGGAGGCAGCTAGTCAGAAACATGCGGACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGATAATAATACTGGAGGCAGCTAGTCAGAAACATGCGGACTCT  800

seq1  CAGAAACAAGGCAGAGTTCAGTGGAGTTAGGTCATGCACGTATACATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAGGCAGAGTTCAGTGGAGTTAGGTCATGCACGTATACATAAC  850

seq1  GTTAAATAGCCAAGCATGGTGATACACACCTTTATCTATGGTGCTTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAGCCAAGCATGGTGATACACACCTTTATCTATGGTGCTTGGGA  900

seq1  AGCAGAGGCAGGTGGAGATTTGTAGTTTTAAGACCATCCAACTCTATATA  950
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AGCAGAGGCA-GTGGAGATTTGTAGTTTT-AGACCATCCAACTCTATATA  948

seq1  ATAAGTTGCAGCTCAGCCAGGGCTATATAATAAGACACTGACCCAAAATA  1000
      || ||||||||||||| ||||||||||| ||||||||||||||| |||||
seq2  AT-AGTTGCAGCTCAG-CAGGGCTATAT-ATAAGACACTGACCC-AAATA  994

seq1  TAATAATTTATAATATATGTATATATAATACATAATACCTACTAATGTAA  1050
      |||||| |||||||||||||||||||||||||||||| ||||| ||||||
seq2  TAATAA-TTATAATATATGTATATATAATACATAATA-CTACT-ATGTAA  1041

seq1  AATTTACATTG-TTTTCTGCCATTTTAATTCTAGTAAGTATCCTTATATT  1099
      ||||||||||| ||||||| ||||   ||| |||| ||||||  ||||||
seq2  AATTTACATTGTTTTTCTG-CATT---ATT-TAGT-AGTATC--TATATT  1083

seq1  TAAGTAGCATGCTATTTCTGTTCAAGAGTTTCATGATGCACGACT  1144
      | |||||||||||||||||| |||||||||||||||||| |||||
seq2  T-AGTAGCATGCTATTTCTG-TCAAGAGTTTCATGATGCCCGACT  1126