BAC Information

Click to search

BAC

Clone NameB6Ng01-102H19
Chromosome13 (Build37)
Map Location 80,624,608 - 80,775,896
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102H19.bB6Ng01-102H19.g
ACCDH911367DH911368
length1,1101,130
definitionDH911367|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H19, 5' end.DH911368|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,774,881 - 80,775,896)(80,624,608 - 80,625,733)
sequence
gaattcacccctccccctgcagaaatgataagcccttcaattatcattat
cttgccaccaacaaaggatttattaattaaggtaatagactttaaaagtg
attactcactcgtgaaataaatgatagttaatatatatgaactgtctaga
aataccacaaacttacttctgaccttgtatgaacactgtccaaggatctg
gtgaccctagagcctgctctttttattttttctggttctctgtggaatgg
cattgctgcacacgggttttgcatggttctatattagcatatgctaggat
ctcactggttaacctacttgttagcatggctgaaatctgctgttaagata
tttctttattttttatgctcctcccattcatggtgtggacaaatcagtca
agaaaccaagaacagaaaccccattacctttagagaaaaggttgtgtaac
atatacatttaatcaagtgcatgtttggcagagtgggacgtgccttgcta
aattgtgggacatgactattttgcttccttttaagcattacaaggcaagg
aatacttagaaaaacaatctaattattgggaatgggcacatttggcttat
gttggcttatgaaactaaaacgaaaattgcatttggaaagggaatgtagg
aaggaaatactggtcactttcatagtcatgatcaatgcccatgaacatag
tgaagcatgtgtccttcttaccagttggaacatcttctggatatatgccc
aggagaagtattgctggatcctcctgtagtactatgtccaattttctgag
gaaccacagactgatttccagagtggttgtacaatcttgcaatcccacca
tcaatggaggagtgttcctctttctccacatcctcatcagcatctgctgt
cacctgaatttttgatcttagccattctgactggtgtaagtggaatctca
ggttgctttgatttgaattttcctgatgattaaggatgctgaacattttt
cagtgcttctcacatttggtattctttagtgagattctttgttagctctg
gagaccggttttattggggttattgattttctaagagtccatcttttgag
tcttatatat
gaattcattttatacgtcataaactttttttcttgttttccctgtttgga
ctgtctttgtcatcactgttcttatgaaactattcttcaaaattataaat
gaagcaatattttatagaatattcacataggactttctttctagccatca
cttgaaatagaaaacttggaattaaagaaaaatagtttggttcattgagt
cagaatgtatgaaggaaaaaaaccaaaccaaaacaaaactccccaacccc
ccaaaatgttttttgtccattacaggacatctgttctcaaagttcagtgc
aattagctccaatgaggtatttcataatcagtttctaaaggataaaaaat
gttgttgctatatttatttttacttatgtggagtggaatttagaaattca
gtcattagattgattgaatttgttaatcaaatacacacatttcaataaaa
tataaatttggtatttgtcccagaaaagattctttttatttttgtagata
ttctttttagtgaacatatttcaagcctagtggtggcttatttgcagatg
cccaatgggtaatcattaccagagtattcagatagctacatatgacttaa
atatttcagcttacacttctcttccgtgtaagtatttttgagatatttaa
gtgtttaagtaactgccaccatgtttccagttagcatttaacaccaaatt
ataattatattgcgtatataactttagaagaggccactcatttttgtgca
tagaatatcatatataaatctactttctgtgtcatatagattctgtcccc
acaaaagggcttgattctttactagtggttctgttctaaagtttctactg
atgcacccccgtatgttcacaaaggaaccttggagctagacctgtaacaa
agccccagagtctgaattttcaggagctccttaaatctcaataatagaaa
acacgcttgggaatagatacaccttctcatcctagaggaaggtgaagcca
ctacttgattattcactgaaaagggaataggaagacgatgtgaccacagg
cctactttgcaacgggaacattttaacatcattataagaaaatatgtatt
acttcacttctctttacaaatacaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80774881_80775896
seq2: B6Ng01-102H19.b_150_1152 (reverse)

seq1  ATATATAAAGAACTCAAAAAGATGGACTC-TAGAAAATCAAATAACCCCA  49
      ||||||||   |||| ||||||||||||| ||||||||| ||||||||||
seq2  ATATATAA--GACTC-AAAAGATGGACTCTTAGAAAATC-AATAACCCCA  46

seq1  TTAAAAAACGGGTCT-CAGAGCTAAACAAAGAATTCTCACCTAAGGAATA  98
        | ||||| ||||| ||||||| ||||||||| ||||| |||| |||||
seq2  --ATAAAACCGGTCTCCAGAGCT-AACAAAGAA-TCTCA-CTAAAGAATA  91

seq1  CCAAATGGTTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCA  148
      |||||||  ||||||||| ||| |||||||||||||||||||||||||||
seq2  CCAAATG--TGAGAAGCA-CTG-AAAAATGTTCAGCATCCTTAATCATCA  137

seq1  GGAAAATTCAAATCAAAGCAACCCTGAGATTCCACCTTACACCAGTCAGA  198
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GGAAAATTCAAATCAAAGCAA-CCTGAGATTCCA-CTTACACCAGTCAGA  185

seq1  ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGATGAGGATGTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGATGAGGATGTGG  235

seq1  AGAAAGAGGAACACTCCTCCATTGATGGTGGGATTGCAAGATTGTACAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAACACTCCTCCATTGATGGTGGGATTGCAAGATTGTACAAC  285

seq1  CACTCTGGAAATCAGTCTGTGGTTCCTCAGAAAATTGGACATAGTACTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGAAATCAGTCTGTGGTTCCTCAGAAAATTGGACATAGTACTAC  335

seq1  AGGAGGATCCAGCAATACTTCTCCTGGGCATATATCCAGAAGATGTTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATCCAGCAATACTTCTCCTGGGCATATATCCAGAAGATGTTCCA  385

seq1  ACTGGTAAGAAGGACACATGCTTCACTATGTTCATGGGCATTGATCATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAGAAGGACACATGCTTCACTATGTTCATGGGCATTGATCATGA  435

seq1  CTATGAAAGTGACCAGTATTTCCTTCCTACATTCCCTTTCCAAATGCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAGTGACCAGTATTTCCTTCCTACATTCCCTTTCCAAATGCAAT  485

seq1  TTTCGTTTTAGTTTCATAAGCCAACATAAGCCAAATGTGCCCATTCCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTTTAGTTTCATAAGCCAACATAAGCCAAATGTGCCCATTCCCAA  535

seq1  TAATTAGATTGTTTTTCTAAGTATTCCTTGCCTTGTAATGCTTAAAAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGATTGTTTTTCTAAGTATTCCTTGCCTTGTAATGCTTAAAAGGA  585

seq1  AGCAAAATAGTCATGTCCCACAATTTAGCAAGGCACGTCCCACTCTGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATAGTCATGTCCCACAATTTAGCAAGGCACGTCCCACTCTGCCA  635

seq1  AACATGCACTTGATTAAATGTATATGTTACACAACCTTTTCTCTAAAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCACTTGATTAAATGTATATGTTACACAACCTTTTCTCTAAAGGT  685

seq1  AATGGGGTTTCTGTTCTTGGTTTCTTGACTGATTTGTCCACACCATGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTTTCTGTTCTTGGTTTCTTGACTGATTTGTCCACACCATGAAT  735

seq1  GGGAGGAGCATAAAAAATAAAGAAATATCTTAACAGCAGATTTCAGCCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCATAAAAAATAAAGAAATATCTTAACAGCAGATTTCAGCCAT  785

seq1  GCTAACAAGTAGGTTAACCAGTGAGATCCTAGCATATGCTAATATAGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAAGTAGGTTAACCAGTGAGATCCTAGCATATGCTAATATAGAAC  835

seq1  CATGCAAAACCCGTGTGCAGCAATGCCATTCCACAGAGAACCAGAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAACCCGTGTGCAGCAATGCCATTCCACAGAGAACCAGAAAAAA  885

seq1  TAAAAAGAGCAGGCTCTAGGGTCACCAGATCCTTGGACAGTGTTCATACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGCAGGCTCTAGGGTCACCAGATCCTTGGACAGTGTTCATACA  935

seq1  AGGTCAGAAGTAAGTTTGTGGTATTTCTAGACAGTTCATATATATTAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAAGTAAGTTTGTGGTATTTCTAGACAGTTCATATATATTAACT  985

seq1  ATCATTTATTTCACGAGT  1016
      ||||||||||||||||||
seq2  ATCATTTATTTCACGAGT  1003

seq1: chr13_80624608_80625733
seq2: B6Ng01-102H19.g_67_1196

seq1  GAATTCATTTTATACGTCATAAACTTTTTTTCTTGTTTTCCCTGTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATACGTCATAAACTTTTTTTCTTGTTTTCCCTGTTTGGA  50

seq1  CTGTCTTTGTCATCACTGTTCTTATGAAACTATTCTTCAAAATTATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGTCATCACTGTTCTTATGAAACTATTCTTCAAAATTATAAAT  100

seq1  GAAGCAATATTTTATAGAATATTCACATAGGACTTTCTTTCTAGCCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATATTTTATAGAATATTCACATAGGACTTTCTTTCTAGCCATCA  150

seq1  CTTGAAATAGAAAACTTGGAATTAAAGAAAAATAGTTTGGTTCATTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATAGAAAACTTGGAATTAAAGAAAAATAGTTTGGTTCATTGAGT  200

seq1  CAGAATGTATGAAGGAAAAAAACCAAACCAAAACAAAACTCCCCAACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTATGAAGGAAAAAAACCAAACCAAAACAAAACTCCCCAACCCC  250

seq1  CCAAAATGTTTTTTGTCCATTACAGGACATCTGTTCTCAAAGTTCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTTTTTTGTCCATTACAGGACATCTGTTCTCAAAGTTCAGTGC  300

seq1  AATTAGCTCCAATGAGGTATTTCATAATCAGTTTCTAAAGGATAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTCCAATGAGGTATTTCATAATCAGTTTCTAAAGGATAAAAAAT  350

seq1  GTTGTTGCTATATTTATTTTTACTTATGTGGAGTGGAATTTAGAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTATATTTATTTTTACTTATGTGGAGTGGAATTTAGAAATTCA  400

seq1  GTCATTAGATTGATTGAATTTGTTAATCAAATACACACATTTCAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGATTGATTGAATTTGTTAATCAAATACACACATTTCAATAAAA  450

seq1  TATAAATTTGGTATTTGTCCCAGAAAAGATTCTTTTTATTTTTGTAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTGGTATTTGTCCCAGAAAAGATTCTTTTTATTTTTGTAGATA  500

seq1  TTCTTTTTAGTGAACATATTTCAAGCCTAGTGGTGGCTTATTTGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTAGTGAACATATTTCAAGCCTAGTGGTGGCTTATTTGCAGATG  550

seq1  CCCAATGGGTAATCATTACCAGAGTATTCAGATAGCTACATATGACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGGTAATCATTACCAGAGTATTCAGATAGCTACATATGACTTAA  600

seq1  ATATTTCAGCTTACACTTCTCTTCCGTGTAAGTATTTTTGAGATATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGCTTACACTTCTCTTCCGTGTAAGTATTTTTGAGATATTTAA  650

seq1  GTGTTTAAGTAACTGCCACCATGTTTCCAGTTAGCATTTAACACCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAGTAACTGCCACCATGTTTCCAGTTAGCATTTAACACCAAATT  700

seq1  ATAATTATATTGCGTATATAACTTTAGAAGAGGCCACTCATTTTTGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATATTGCGTATATAACTTTAGAAGAGGCCACTCATTTTTGTGCA  750

seq1  TAGAATATCATATATAAATCTACTTTCTGTGTCATATAGATTCTGTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCATATATAAATCTACTTTCTGTGTCATATAGATTCTGTCCCC  800

seq1  ACAAAAGGGCTTGATTCTTTACTAGTGGTTCTGTTCTAAAGTTTCTACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGGCTTGATTCTTTACTAGTGGTTCTGTTCTAAAGTTTCTACTG  850

seq1  ATGCACCCCCGTATGTTCACAAAGGAACCTTGGAGCTAGACCTGTAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCCCGTATGTTCACAAAGGAACCTTGGAGCTAGACCTGTAACAA  900

seq1  AGCCCCAGAGTCTGAATTTTCAGGAGCTCCTTAAATCTCAATAATAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGAGTCTGAATTTTCAGGAGCTCCTTAAATCTCAATAATAGAAA  950

seq1  ACAACGCTTGGGAATAGATACACCTTCTCCATCCTAGGAGGAAGGTGAAG  1000
      || ||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AC-ACGCTTGGGAATAGATACACCTTCT-CATCCTA-GAGGAAGGTGAAG  997

seq1  CCACTACTTGAATTATTCACTGAAAAGGGAATAGGAAGACGATGTGACCA  1050
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTTG-ATTATTCACTGAAAAGGGAATAGGAAGACGATGTGACCA  1046

seq1  CA-GCCTACCTTTGCAAC-TGAACATTTTAACATCATTAT-AGAAAATAT  1097
      || ||||| |||||||||  |||||||||||||||||||| |||||||||
seq2  CAGGCCTA-CTTTGCAACGGGAACATTTTAACATCATTATAAGAAAATAT  1095

seq1  GTATTACT---CATCTC-TTAC-AATACA-GAGGG  1126
      ||||||||   | |||| |||| |||||| |||||
seq2  GTATTACTTCACTTCTCTTTACAAATACAGGAGGG  1130