BAC Information

Click to search

BAC

Clone NameB6Ng01-102L08
Chromosome13 (Build37)
Map Location 27,949,182 - 27,950,302
singlet/doubletsinglet
Overlap geneOTTMUSG00000000651
Upstream geneLOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1
Downstream geneLOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102L08.bB6Ng01-102L08.g
ACCDH911521DH911522
length1,2601,102
definitionDH911521|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L08, 5' end.DH911522|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacataaaacgagagacattgaaatttatagaggagaaagtggg
gaaaatcctcaaagatatgggcacaggggggaaaatcctaaacagaacag
caatggcctgtgctcaaagatcaggaatcgacaaatgggacctcataaaa
ttgcaaagcttgtgtagggcaaaagatactgtcaataagacaaaaaggcc
accaacagattgggaaagaatttttaccaatcctaaatctgatagaggac
taatatccaatatatacaaagagctcaagaagctgaattccagaaattca
aataaccccattaaaatggggtacagagctaaacaaagaattttcaacta
aggaataccgaagggctgagaagcacttagaaaaatattcaacatcctta
atcttcagagaaatgcaaatcaaaacattgctgagattccacctcacacc
agtcagaatggccagtatcaaaaattcacatgagagcagatactggcgag
gatgtggagaaagaggaacactcctccattgctcgtgggattgcaagctg
gtacaaccactttggaaatcagtctggcggttcctcagaaaattgtacat
agcactactggtagatccagcaatacctctcctggacatatactcagaag
atgttccaactgggtataatgacacatgctccactatgttcatagcagcc
ctatttataataggcagaagctggaaagaactcagatgtccctcaacaca
ggaatggatatggaaaatgtggtacttttacacaatgtagttctactcag
ctattaaaaatgatgaatttaagaaattttttggcaaatggatgtatctg
gaggatatcacaaaagaagtcacttgatatgcgctcattgataagtggat
attagcccagaaaagtagaatacccaaggtacaacttctaaacacaataa
aatcaaggatgaccaatgtgtggatacttgattcctccctagaataggaa
ataaaatatccatggaaggagttgcagagacaaagtttggagctagcgaa
atgatggatcatccatggactgtctcacctgggcgtcatcccataatcag
ccacgaaccagaaactatgcttgcagcatcattcgctgagcttcctgaaa
tagctgtcttcttgtgagctatgcaaggcctggcaatacgaatgaatgtt
ctccacgtcatctaaggattgaccatggcctcagggggagagagctcaca
ggcaagatat
gaattcagatgactatgtttgaagaagattttaaagaaattaagacccat
tcaattattgtgttctgaggggttttaaacatttttaaatttttcaaata
tttggggattgtgcataataatcataatcatattggctttcagtactctg
caagttgtgtgatcagtagtgtctgtctttcattgtctttcattaattat
cacaaatacttcaacttttatcaccagtaaatttcctgaaaacaccagtt
cttttttgtttgtttgtttgtttcttttgttttgttttgttttgttttgt
tttgttttgagacagggtttctctgtagagccctggctatcctggaactc
actttgtagatcaggctggcctcaaactcagaattcaccttcctctgcct
cccaagtgctgggattaaaggtgtgtgccaccatcgcccagtgaaaacac
cagttcttgattcctacaaattgacaagtaataaaatgtctgaaggaatt
aattagttacaaaatgtgttggttgcacatctaacttcaactacttgtga
agtatttgattgaaacatgttggtggtatagataggtgttttatgaaagt
cacaattgaaattttgactaattccccattgagacttttatatttctgag
agccactttttatttttaaatgagtcaacaacaaattcaaaagatacaaa
tttaaaggatgctacatgatatttcagaagcagagcacatgaaagaagta
tcagcagttatctatttttaacatgtaacacttcagacgttgagataaat
atcaaccttcttaaagtcattgtctaggcagctgatcatgccatatgaag
aacgaatgcgagtatcttcattgtcagattgcaagagtggcagtctggac
caggcagggttcttcttttcttcatctccattctgagctaatcatcaaaa
atatatcactatcagtttattataatattttggtgcctaaatgctaataa
tttgtagaggtagattttcaaacagctagtgtatggatttcatgatgtgg
tgaggtagctaaaagagagattggtgcacttgtcttttttgtctgatcag
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27949182_27950302
seq2: B6Ng01-102L08.g_69_1170 (reverse)

seq1  GACTGATCAGACAAAAAAGACAAGTGCAACAAATCCTTCTCTTTTAGCTA  50
      ||||||||||||||||||||||||||| || ||||  |||||||||||||
seq2  GACTGATCAGACAAAAAAGACAAGTGC-ACCAATC--TCTCTTTTAGCTA  47

seq1  CCCTCACCAACATCATGGAAATCCATACACTTAGCTTGTTTTGAAAATTC  100
       ||||||| ||||||| ||||||||||||| |||||   |||||||| ||
seq2  -CCTCACC-ACATCAT-GAAATCCATACAC-TAGCT--GTTTGAAAA-TC  90

seq1  TAACCTCTTACAAATTTATTTAGCATTTAGGCACCAAAATATTATAATAA  150
      | ||||| ||||||||   ||||||||||||||||||||||||||||| |
seq2  T-ACCTC-TACAAATT--ATTAGCATTTAGGCACCAAAATATTATAAT-A  135

seq1  AACTGATAGTTGAATATATTTTTGATGATTAGCTTCAGAATGGAGATGAA  200
      ||||||||||   |||||||||||||||||||| ||||||||||||||||
seq2  AACTGATAGT--GATATATTTTTGATGATTAGC-TCAGAATGGAGATGAA  182

seq1  GAAAAGAAGAACCCTGCCTGGTCCAGACTGCCACTCTTGCAATCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGAACCCTGCCTGGTCCAGACTGCCACTCTTGCAATCTGACAA  232

seq1  TGAAGATACTCGCATTCGTTCTTCATATGGCATGATCAGCTGCCTAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATACTCGCATTCGTTCTTCATATGGCATGATCAGCTGCCTAGACA  282

seq1  ATGACTTTAAGAAGGTTGATATTTATCTCAACGTCCTGAAGTGTTACATG  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGACTTTAAGAAGGTTGATATTTATCTCAACGT-CTGAAGTGTTACATG  331

seq1  TTAAAAATAGATAACTGCTGATACTTCTTTCATGTGCTCTGCTTCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAGATAACTGCTGATACTTCTTTCATGTGCTCTGCTTCTGAAA  381

seq1  TATCATGTAGCATCCTTTAAATTTGTATCTTTTGAATTTGTTGTTGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTAGCATCCTTTAAATTTGTATCTTTTGAATTTGTTGTTGACTC  431

seq1  ATTTAAAAATAAAAAGTGGCTCTCAGAAATATAAAAGTCTCAATGGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATAAAAAGTGGCTCTCAGAAATATAAAAGTCTCAATGGGGAA  481

seq1  TTAGTCAAAATTTCAATTGTGACTTTCATAAAACACCTATCTATACCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAAAATTTCAATTGTGACTTTCATAAAACACCTATCTATACCACC  531

seq1  AACATGTTTCAATCAAATACTTCACAAGTAGTTGAAGTTAGATGTGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTCAATCAAATACTTCACAAGTAGTTGAAGTTAGATGTGCAAC  581

seq1  CAACACATTTTGTAACTAATTAATTCCTTCAGACATTTTATTACTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATTTTGTAACTAATTAATTCCTTCAGACATTTTATTACTTGTCA  631

seq1  ATTTGTAGGAATCAAGAACTGGTGTTTTCACTGGGCGATGGTGGCACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGGAATCAAGAACTGGTGTTTTCACTGGGCGATGGTGGCACACA  681

seq1  CCTTTAATCCCAGCACTTGGGAGGCAGAGGAAGGTGAATTCTGAGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTTGGGAGGCAGAGGAAGGTGAATTCTGAGTTTGA  731

seq1  GGCCAGCCTGATCTACAAAGTGAGTTCCAGGATAGCCAGGGCTCTACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGATCTACAAAGTGAGTTCCAGGATAGCCAGGGCTCTACAGA  781

seq1  GAAACCCTGTCTCAAAACAAAACAAAACAAAACAAAACAAAACAAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCAAAACAAAACAAAACAAAACAAAACAAAACAAAAGAA  831

seq1  ACAAACAAACAAACAAAAAAGAACTGGTGTTTTCAGGAAATTTACTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAAAAGAACTGGTGTTTTCAGGAAATTTACTGGTG  881

seq1  ATAAAAGTTGAAGTATTTGTGATAATTAATGAAAGACAATGAAAGACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTGAAGTATTTGTGATAATTAATGAAAGACAATGAAAGACAGA  931

seq1  CACTACTGATCACACAACTTGCAGAGTACTGAAAGCCAATATGATTATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGATCACACAACTTGCAGAGTACTGAAAGCCAATATGATTATGA  981

seq1  TTATTATGCACAATCCCCAAATATTTGAAAAATTTAAAAATGTTTAAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGCACAATCCCCAAATATTTGAAAAATTTAAAAATGTTTAAAAC  1031

seq1  CCCTCAGAACACAATAATTGAATGGGTCTTAATTTCTTTAAAATCTTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAACACAATAATTGAATGGGTCTTAATTTCTTTAAAATCTTCTT  1081

seq1  CAAACATAGTCATCTGAATTC  1121
      |||||||||||||||||||||
seq2  CAAACATAGTCATCTGAATTC  1102