BAC Information

Click to search

BAC

Clone NameB6Ng01-102P17
Chromosome13 (Build37)
Map Location 22,265,672 - 22,266,744
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8
Downstream geneLOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102P17.bB6Ng01-102P17.g
ACCDH911717DH911718
length1941,068
definitionDH911717|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P17, 5' end.DH911718|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttctgacaaatggaaattccctacagatacttaagaacagccaagtcact
ctcatatgcaaaactttaccaaggcctaggaaaaaggggggggggggggt
tgtggtgtgtggtggataggattagagtatgactgttgttgtctttgatt
tttttttgtatttttgtacatgttgatgttgtgggaagcttctg
gaattcatatgctcttgtccttgtaatgtttcgccagcaaaacacacttg
gacaaccagatccttctacggcaaagctttattgcttacttctcaggaag
accccgaacccggaaaatggtgctgcttaaatacccctctgtgtgacgtg
tcagctcctgattagctgctcactatcagcccagatgacgccacgggaca
ggcagggcacaaggaatggaaaaataccctagcacatgcgcagactattt
gtttaccagttagaacaccggatatcagcgccatcttgtaatggcaattg
caagggtggcttctcacaatatgcagtgtatattcttaccctttctttaa
tgcttggtaccctgaaatgccaagcacttacaacaggcagtgaattagct
tcactccctggtcatgtccactttgtaagagaccttcaattaaagaatgc
ttcctggcatccttcttcactggtttccaagagtctctggcacatagtga
gtgctttgcaaataagtagaggagtcagtgatgatagaagaacagtagaa
cgaacaagaagaaaggaaaggtttgtgggtccttataagactaaaactct
agcatgaggaaaaaaaattctaattaggtgactgcatgccctcctgcact
ttcctatgaaggatgcagcaagctaaactccatgataggaatggtgggat
ggtgggatagtgaacatccctgtctatttcctagagcctgaaccagtctt
cagttacctagcaccagctatatagaaaaaaatctattttatcaattaat
ttattgttgtaatacatttagaaaggcaaggcaaagccatcccagtaggc
atttgatcatgaagaactgggatgtgaaaagatatttcctctatctcagg
gaggtagctgggcctagggatatggacatccagatattcaggacaacagg
ctgagaccagcatagctagtactaacaatgctttcatacctgttttgtaa
atcacttgtcactgtggacctgtgtataggagaaatttaatatctggccc
aacaaagaaaagaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22265672_22266744
seq2: B6Ng01-102P17.g_69_1136

seq1  GAATTCATATGCTCTTGTCCTTGTAATGTTTCGCCAGCAAAACACACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCTCTTGTCCTTGTAATGTTTCGCCAGCAAAACACACTTG  50

seq1  GACAACCAGATCCTTCTACGGCAAAGCTTTATTGCTTACTTCTCAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAGATCCTTCTACGGCAAAGCTTTATTGCTTACTTCTCAGGAAG  100

seq1  ACCCCGAACCCGGAAAATGGTGCTGCTTAAATACCCCTCTGTGTGACGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGAACCCGGAAAATGGTGCTGCTTAAATACCCCTCTGTGTGACGTG  150

seq1  TCAGCTCCTGATTAGCTGCTCACTATCAGCCCAGATGACGCCACGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTGATTAGCTGCTCACTATCAGCCCAGATGACGCCACGGGACA  200

seq1  GGCAGGGCACAAGGAATGGAAAAATACCCTAGCACATGCGCAGACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCACAAGGAATGGAAAAATACCCTAGCACATGCGCAGACTATTT  250

seq1  GTTTACCAGTTAGAACACCGGATATCAGCGCCATCTTGTAATGGCAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCAGTTAGAACACCGGATATCAGCGCCATCTTGTAATGGCAATTG  300

seq1  CAAGGGTGGCTTCTCACAATATGCAGTGTATATTCTTACCCTTTCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGGCTTCTCACAATATGCAGTGTATATTCTTACCCTTTCTTTAA  350

seq1  TGCTTGGTACCCTGAAATGCCAAGCACTTACAACAGGCAGTGAATTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTACCCTGAAATGCCAAGCACTTACAACAGGCAGTGAATTAGCT  400

seq1  TCACTCCCTGGTCATGTCCACTTTGTAAGAGACCTTCAATTAAAGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCTGGTCATGTCCACTTTGTAAGAGACCTTCAATTAAAGAATGC  450

seq1  TTCCTGGCATCCTTCTTCACTGGTTTCCAAGAGTCTCTGGCACATAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCATCCTTCTTCACTGGTTTCCAAGAGTCTCTGGCACATAGTGA  500

seq1  GTGCTTTGCAAATAAGTAGAGGAGTCAGTGATGATAGAAGAACAGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGCAAATAAGTAGAGGAGTCAGTGATGATAGAAGAACAGTAGAA  550

seq1  CGAACAAGAAGAAAGGAAAGGTTTGTGGGTCCTTATAAGACTAAAACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAGAAGAAAGGAAAGGTTTGTGGGTCCTTATAAGACTAAAACTCT  600

seq1  AGCATGAGGAAAAAAAATTCTAATTAGGTGACTGCATGCCCTCCTGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAGGAAAAAAAATTCTAATTAGGTGACTGCATGCCCTCCTGCACT  650

seq1  TTCCTATGAAGGATGCAGCAAGCTAAACTCCATGATAGGAATGGTGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGAAGGATGCAGCAAGCTAAACTCCATGATAGGAATGGTGGGAT  700

seq1  GGTGGGATAGTGAACATCCCTGTCTATTTCCTAGAGCCTGAACCAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATAGTGAACATCCCTGTCTATTTCCTAGAGCCTGAACCAGTCTT  750

seq1  CAGTTACCTAGCACCAGCTATATAGAAAAAAATCTATTTTATCAATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCTAGCACCAGCTATATAGAAAAAAATCTATTTTATCAATTAAT  800

seq1  TTATTGTTGTAATACA-TTAGAAAGGCAAGGCAAAGCCATCCCAGTA-GC  848
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TTATTGTTGTAATACATTTAGAAAGGCAAGGCAAAGCCATCCCAGTAGGC  850

seq1  ATTTGATCATGAAGAACT-GGATGTGAAAAGATATTTCCTCTATCTCAGG  897
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ATTTGATCATGAAGAACTGGGATGTGAAAAGATATTTCCTCTATCTCA-G  899

seq1  GGAAGTAGCTGGCCTTAGGGATATGGACATTCCAGATAATCAGGACAAAC  947
      ||| |||||||| | |||||||||||||| |||||||| ||||||| |||
seq2  GGAGGTAGCTGGGCCTAGGGATATGGACA-TCCAGATATTCAGGAC-AAC  947

seq1  AGGCTGAGACCAGCATAGCTAAGTACTAACAATGCTTTCATACCTGGTAT  997
      |||||||||||||||||||| |||||||||||||||||||||||| || |
seq2  AGGCTGAGACCAGCATAGCT-AGTACTAACAATGCTTTCATACCT-GTTT  995

seq1  TGTAAAATCACTTGTCACTGTGGAACCTGTGTATAAGGAGAAA-ATAAAA  1046
      ||| ||||||||||||||||||| |||||||||| ||||||||  ||| |
seq2  TGT-AAATCACTTGTCACTGTGG-ACCTGTGTAT-AGGAGAAATTTAATA  1042

seq1  TCT-GCCCAACAAAAGAAAAGGAAACAG  1073
      ||| ||||||| |||||||| |||||||
seq2  TCTGGCCCAAC-AAAGAAAA-GAAACAG  1068